RNA–Protein interactions for RNA: ENST00000557222.5

VRK1-206, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 1,029 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-206ENST00000557222 GLTPD2A6NH11 291 aa11.64□□□□□ -0.55
VRK1-206ENST00000557222 IL6STP40189 918 aaPredicted RBP11.64□□□□□ -0.55
VRK1-206ENST00000557222 C2CD5Q86YS7 1000 aa11.64□□□□□ -0.55
VRK1-206ENST00000557222 JMYQ8N9B5 988 aa11.64□□□□□ -0.55
VRK1-206ENST00000557222 SMC1BQ8NDV3 1235 aa11.64□□□□□ -0.55
VRK1-206ENST00000557222 KLRG1Q96E93 195 aa11.64□□□□□ -0.55
VRK1-206ENST00000557222 BRIP1Q9BX63 1249 aa11.64□□□□□ -0.55
VRK1-206ENST00000557222 NPDC1Q9NQX5 325 aaPredicted RBP11.64□□□□□ -0.55
VRK1-206ENST00000557222 AFDNP55196 1824 aaKnown RBP11.64□□□□□ -0.55
VRK1-206ENST00000557222 HEG1Q9ULI3 1381 aa11.64□□□□□ -0.55
VRK1-206ENST00000557222 PCNTO95613 3336 aa11.63□□□□□ -0.55
VRK1-206ENST00000557222 VIRMAQ69YN4 1812 aaKnown RBP11.63□□□□□ -0.55
VRK1-206ENST00000557222 TNRC6CQ9HCJ0 1690 aaKnown RBP11.63□□□□□ -0.55
VRK1-206ENST00000557222 VEGFAP15692 232 aaPredicted RBP11.63□□□□□ -0.55
VRK1-206ENST00000557222 CANXP27824 592 aaKnown RBP11.63□□□□□ -0.55
VRK1-206ENST00000557222 PDE6BP35913 854 aa11.63□□□□□ -0.55
VRK1-206ENST00000557222 CC2D1BQ5T0F9 858 aaKnown RBP11.63□□□□□ -0.55
VRK1-206ENST00000557222 IL17REQ8NFR9 667 aa11.63□□□□□ -0.55
VRK1-206ENST00000557222 ZNF496Q96IT1 587 aaPredicted RBP11.63□□□□□ -0.55
VRK1-206ENST00000557222 DLEC1Q9Y238 1755 aa11.62□□□□□ -0.55
VRK1-206ENST00000557222 FMNL2Q96PY5 1086 aa11.62□□□□□ -0.55
VRK1-206ENST00000557222 CEMIPQ8WUJ3 1361 aa11.62□□□□□ -0.55
VRK1-206ENST00000557222 COL3A1P02461 1466 aaPredicted RBP11.62□□□□□ -0.55
VRK1-206ENST00000557222 WDR90Q96KV7 1748 aa11.61□□□□□ -0.55
VRK1-206ENST00000557222 U2SURPO15042 1029 aaKnown RBP11.61□□□□□ -0.55
VRK1-206ENST00000557222 BCAMP50895 628 aa11.61□□□□□ -0.55
VRK1-206ENST00000557222 RASSF7Q02833 373 aa11.61□□□□□ -0.55
VRK1-206ENST00000557222 NPM2Q86SE8 214 aaKnown RBP11.61□□□□□ -0.55
VRK1-206ENST00000557222 PLA2G2EQ9NZK7 142 aa11.61□□□□□ -0.55
VRK1-206ENST00000557222 RBM27Q9P2N5 1060 aaKnown RBP11.61□□□□□ -0.55
VRK1-206ENST00000557222 CARMIL3Q8ND23 1372 aa11.61□□□□□ -0.55
VRK1-206ENST00000557222 LTBP3Q9NS15 1303 aa11.6□□□□□ -0.55
VRK1-206ENST00000557222 SOWAHBA6NEL2 793 aa11.6□□□□□ -0.55
VRK1-206ENST00000557222 C3orf80F5H4A9 247 aa11.6□□□□□ -0.55
VRK1-206ENST00000557222 NFKBIEO00221 500 aa11.6□□□□□ -0.55
VRK1-206ENST00000557222 SOGA3Q5TF21 947 aa11.6□□□□□ -0.55
VRK1-206ENST00000557222 TBC1D9BQ66K14 1250 aa11.6□□□□□ -0.55
VRK1-206ENST00000557222 CLEC4GQ6UXB4 293 aa11.6□□□□□ -0.55
VRK1-206ENST00000557222 SETDB2Q96T68 719 aa11.6□□□□□ -0.55
VRK1-206ENST00000557222 SMAPO00193 183 aa11.59□□□□□ -0.55
VRK1-206ENST00000557222 PRELPP51888 382 aa11.59□□□□□ -0.55
VRK1-206ENST00000557222 STYK1Q6J9G0 422 aa11.59□□□□□ -0.55
VRK1-206ENST00000557222 PRR5LQ6MZQ0 368 aa11.59□□□□□ -0.55
VRK1-206ENST00000557222 BICDL1Q6ZP65 573 aa11.59□□□□□ -0.55
VRK1-206ENST00000557222 CNKSR1Q969H4 720 aa11.59□□□□□ -0.55
VRK1-206ENST00000557222 CFAP53Q96M91 514 aa11.59□□□□□ -0.55
VRK1-206ENST00000557222 NUDCQ9Y266 331 aa11.59□□□□□ -0.55
VRK1-206ENST00000557222 BTBD11A6QL63 1104 aa11.58□□□□□ -0.56
VRK1-206ENST00000557222 CAMTA2O94983 1202 aa11.58□□□□□ -0.56
VRK1-206ENST00000557222 TTC13Q8NBP0 860 aa11.58□□□□□ -0.56
VRK1-206ENST00000557222 TATDN2Q93075 761 aa11.58□□□□□ -0.56
VRK1-206ENST00000557222 ZNF622Q969S3 477 aaKnown RBP eCLIP11.58□□□□□ -0.56
VRK1-206ENST00000557222 RSPH6AQ9H0K4 717 aa11.58□□□□□ -0.56
VRK1-206ENST00000557222 TBC1D2BQ9UPU7 963 aa11.58□□□□□ -0.56
VRK1-206ENST00000557222 SIPA1L3O60292 1781 aaPredicted RBP11.58□□□□□ -0.56
VRK1-206ENST00000557222 NBPF26B4DH59 902 aa11.57□□□□□ -0.56
VRK1-206ENST00000557222 HTATSF1O43719 755 aaKnown RBP11.57□□□□□ -0.56
VRK1-206ENST00000557222 A1BGP04217 495 aa11.57□□□□□ -0.56
VRK1-206ENST00000557222 ST5P78524 1137 aa11.57□□□□□ -0.56
VRK1-206ENST00000557222 PADI6Q6TGC4 694 aa11.57□□□□□ -0.56
VRK1-206ENST00000557222 CNBD1Q8NA66 436 aa11.57□□□□□ -0.56
VRK1-206ENST00000557222 MASTLQ96GX5 879 aa11.57□□□□□ -0.56
VRK1-206ENST00000557222 PNMA3Q9UL41 463 aa11.57□□□□□ -0.56
VRK1-206ENST00000557222 SCN7AQ01118 1682 aa11.56□□□□□ -0.56
VRK1-206ENST00000557222 POTECB2RU33 542 aa11.56□□□□□ -0.56
VRK1-206ENST00000557222 C21orf2O43822 256 aa11.56□□□□□ -0.56
VRK1-206ENST00000557222 SNRPA1P09661 255 aaKnown RBP11.56□□□□□ -0.56
VRK1-206ENST00000557222 SRGNP10124 158 aa11.56□□□□□ -0.56
VRK1-206ENST00000557222 PRKAR2BP31323 418 aa11.56□□□□□ -0.56
VRK1-206ENST00000557222 ERFEQ4G0M1 354 aa11.56□□□□□ -0.56
VRK1-206ENST00000557222 DZIP3Q86Y13 1208 aaKnown RBP11.56□□□□□ -0.56
VRK1-206ENST00000557222 RTF1Q92541 710 aaKnown RBP11.56□□□□□ -0.56
VRK1-206ENST00000557222 PHACTR3Q96KR7 559 aa11.56□□□□□ -0.56
VRK1-206ENST00000557222 TAOK3Q9H2K8 898 aa11.56□□□□□ -0.56
VRK1-206ENST00000557222 ZNF652Q9Y2D9 606 aa11.56□□□□□ -0.56
VRK1-206ENST00000557222 CCDC88AQ3V6T2 1871 aa11.55□□□□□ -0.56
VRK1-206ENST00000557222 ANKRD31Q8N7Z5 1873 aa11.55□□□□□ -0.56
VRK1-206ENST00000557222 DICER1Q9UPY3 1922 aaKnown RBP11.55□□□□□ -0.56
VRK1-206ENST00000557222 TESPA1A2RU30 521 aaPredicted RBP11.55□□□□□ -0.56
VRK1-206ENST00000557222 KLRG2A4D1S0 409 aaPredicted RBP11.55□□□□□ -0.56
VRK1-206ENST00000557222 HTRA3P83110 453 aa11.55□□□□□ -0.56
VRK1-206ENST00000557222 PTGDRQ13258 359 aa11.55□□□□□ -0.56
VRK1-206ENST00000557222 NUDT18Q6ZVK8 323 aa11.55□□□□□ -0.56
VRK1-206ENST00000557222 ZNF330Q9Y3S2 320 aaPredicted RBP11.55□□□□□ -0.56
VRK1-206ENST00000557222 FER1L6Q2WGJ9 1857 aa11.55□□□□□ -0.56
VRK1-206ENST00000557222 NPHP1O15259 732 aa11.54□□□□□ -0.56
VRK1-206ENST00000557222 KCNQ3O43525 872 aa11.54□□□□□ -0.56
VRK1-206ENST00000557222 C7orf43Q8WVR3 580 aa11.54□□□□□ -0.56
VRK1-206ENST00000557222 LRCH3Q96II8 777 aa11.54□□□□□ -0.56
VRK1-206ENST00000557222 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.54□□□□□ -0.56
VRK1-206ENST00000557222 USP16Q9Y5T5 823 aa11.54□□□□□ -0.56
VRK1-206ENST00000557222 TIAM2Q8IVF5 1701 aa11.53□□□□□ -0.56
VRK1-206ENST00000557222 NPR1P16066 1061 aa11.53□□□□□ -0.56
VRK1-206ENST00000557222 PRPF40BQ6NWY9 871 aaKnown RBP11.53□□□□□ -0.56
VRK1-206ENST00000557222 TPTE2Q6XPS3 522 aa11.53□□□□□ -0.56
VRK1-206ENST00000557222 NBPF5PQ86XG9 351 aaPredicted RBP11.53□□□□□ -0.56
VRK1-206ENST00000557222 IQCA1LA6NCM1 817 aa11.52□□□□□ -0.57
VRK1-206ENST00000557222 U2AF1L5P0DN76 240 aaPredicted RBP11.52□□□□□ -0.57
VRK1-206ENST00000557222 U2AF1Q01081 240 aaKnown RBP eCLIP11.52□□□□□ -0.57
VRK1-206ENST00000557222 TAF7Q15545 349 aaPredicted RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 163 ms