RNA–Protein interactions for RNA: ENST00000556778.5

PRKCH-222, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-222	ENST00000556778	CWF19L2	Q2TBE0	894 aa	Known RBP	11.28	□□□□□ -0.6
PRKCH-222	ENST00000556778	FAM89A	Q96GI7	184 aa		11.28	□□□□□ -0.6
PRKCH-222	ENST00000556778	METTL22	Q9BUU2	404 aa	Predicted RBP	11.28	□□□□□ -0.6
PRKCH-222	ENST00000556778	UTP14A	Q9BVJ6	771 aa	Known RBP	11.28	□□□□□ -0.6
PRKCH-222	ENST00000556778	TRMT112	Q9UI30	125 aa	Known RBP	11.28	□□□□□ -0.6
PRKCH-222	ENST00000556778	ZBED9	Q6R2W3	1325 aa		11.28	□□□□□ -0.6
PRKCH-222	ENST00000556778	UTRN	P46939	3433 aa		11.28	□□□□□ -0.6
PRKCH-222	ENST00000556778	ATP10D	Q9P241	1426 aa		11.27	□□□□□ -0.6
PRKCH-222	ENST00000556778	COL24A1	Q17RW2	1714 aa		11.27	□□□□□ -0.61
PRKCH-222	ENST00000556778	LAMB4	A4D0S4	1761 aa		11.27	□□□□□ -0.61
PRKCH-222	ENST00000556778	HS6ST3	Q8IZP7	471 aa		11.27	□□□□□ -0.61
PRKCH-222	ENST00000556778	BCS1L	Q9Y276	419 aa		11.27	□□□□□ -0.61
PRKCH-222	ENST00000556778		H0YIN7	160 aa		11.26	□□□□□ -0.61
PRKCH-222	ENST00000556778	BCAR3	O75815	825 aa		11.26	□□□□□ -0.61
PRKCH-222	ENST00000556778	DDX58	O95786	925 aa	Known RBP	11.26	□□□□□ -0.61
PRKCH-222	ENST00000556778	RARS	P54136	660 aa	Known RBP	11.26	□□□□□ -0.61
PRKCH-222	ENST00000556778	ST5	P78524	1137 aa		11.26	□□□□□ -0.61
PRKCH-222	ENST00000556778	PARP10	Q53GL7	1025 aa		11.26	□□□□□ -0.61
PRKCH-222	ENST00000556778	HSP90AB3P	Q58FF7	597 aa		11.26	□□□□□ -0.61
PRKCH-222	ENST00000556778	ZNF622	Q969S3	477 aa	Known RBP eCLIP	11.26	□□□□□ -0.61
PRKCH-222	ENST00000556778	CHMP4A	Q9BY43	222 aa		11.26	□□□□□ -0.61
PRKCH-222	ENST00000556778	NOB1	Q9ULX3	412 aa	Known RBP	11.26	□□□□□ -0.61
PRKCH-222	ENST00000556778	GOLGB1	Q14789	3259 aa	Known RBP	11.26	□□□□□ -0.61
PRKCH-222	ENST00000556778	SCN7A	Q01118	1682 aa		11.25	□□□□□ -0.61
PRKCH-222	ENST00000556778	KLRG2	A4D1S0	409 aa	Predicted RBP	11.25	□□□□□ -0.61
PRKCH-222	ENST00000556778	SRGN	P10124	158 aa		11.25	□□□□□ -0.61
PRKCH-222	ENST00000556778	PDE6B	P35913	854 aa		11.25	□□□□□ -0.61
PRKCH-222	ENST00000556778	TRIM28	Q13263	835 aa	Known RBP	11.25	□□□□□ -0.61
PRKCH-222	ENST00000556778	SLC10A5	Q5PT55	438 aa		11.25	□□□□□ -0.61
PRKCH-222	ENST00000556778	SLC4A10	Q6U841	1118 aa		11.25	□□□□□ -0.61
PRKCH-222	ENST00000556778	OLFM4	Q6UX06	510 aa		11.25	□□□□□ -0.61
PRKCH-222	ENST00000556778	PPP1R42	Q7Z4L9	355 aa		11.25	□□□□□ -0.61
PRKCH-222	ENST00000556778	DNAAF4	Q8WXU2	420 aa		11.25	□□□□□ -0.61
PRKCH-222	ENST00000556778	NYX	Q9GZU5	481 aa		11.25	□□□□□ -0.61
PRKCH-222	ENST00000556778	SMC4	Q9NTJ3	1288 aa		11.25	□□□□□ -0.61
PRKCH-222	ENST00000556778	PIM2	Q9P1W9	311 aa		11.25	□□□□□ -0.61
PRKCH-222	ENST00000556778	TNN	Q9UQP3	1299 aa		11.25	□□□□□ -0.61
PRKCH-222	ENST00000556778	NEURL1B	A8MQ27	555 aa		11.24	□□□□□ -0.61
PRKCH-222	ENST00000556778	DALRD3	Q5D0E6	543 aa	Known RBP	11.24	□□□□□ -0.61
PRKCH-222	ENST00000556778	BEND3	Q5T5X7	828 aa		11.24	□□□□□ -0.61
PRKCH-222	ENST00000556778	DPY19L2	Q6NUT2	758 aa		11.24	□□□□□ -0.61
PRKCH-222	ENST00000556778	ALDH1L2	Q3SY69	923 aa		11.23	□□□□□ -0.61
PRKCH-222	ENST00000556778	CCDC191	Q8NCU4	936 aa		11.23	□□□□□ -0.61
PRKCH-222	ENST00000556778	MS4A4A	Q96JQ5	239 aa		11.23	□□□□□ -0.61
PRKCH-222	ENST00000556778	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.23	□□□□□ -0.61
PRKCH-222	ENST00000556778	CWC25	Q9NXE8	425 aa	Predicted RBP	11.23	□□□□□ -0.61
PRKCH-222	ENST00000556778	SH3TC1	Q8TE82	1336 aa		11.23	□□□□□ -0.61
PRKCH-222	ENST00000556778	IRS4	O14654	1257 aa	Predicted RBP	11.22	□□□□□ -0.61
PRKCH-222	ENST00000556778	GCKR	Q14397	625 aa		11.22	□□□□□ -0.61
PRKCH-222	ENST00000556778	CRY2	Q49AN0	593 aa		11.22	□□□□□ -0.61
PRKCH-222	ENST00000556778	TTLL6	Q8N841	843 aa		11.22	□□□□□ -0.61
PRKCH-222	ENST00000556778	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	11.22	□□□□□ -0.61
PRKCH-222	ENST00000556778	MFRP	Q9BY79	579 aa		11.22	□□□□□ -0.61
PRKCH-222	ENST00000556778	BCOR	Q6W2J9	1755 aa		11.21	□□□□□ -0.61
PRKCH-222	ENST00000556778		H7C1W4	665 aa		11.21	□□□□□ -0.61
PRKCH-222	ENST00000556778	C21orf2	O43822	256 aa		11.21	□□□□□ -0.61
PRKCH-222	ENST00000556778	CT47B1	P0C2W7	299 aa	Predicted RBP	11.21	□□□□□ -0.61
PRKCH-222	ENST00000556778	NPR1	P16066	1061 aa		11.21	□□□□□ -0.61
PRKCH-222	ENST00000556778	NEXN	Q0ZGT2	675 aa		11.21	□□□□□ -0.61
PRKCH-222	ENST00000556778	STYK1	Q6J9G0	422 aa		11.21	□□□□□ -0.61
PRKCH-222	ENST00000556778	MAMSTR	Q6ZN01	415 aa		11.21	□□□□□ -0.61
PRKCH-222	ENST00000556778	ARHGAP27	Q6ZUM4	889 aa		11.21	□□□□□ -0.61
PRKCH-222	ENST00000556778	FBXO22	Q8NEZ5	403 aa		11.21	□□□□□ -0.61
PRKCH-222	ENST00000556778	LINS1	Q8NG48	757 aa		11.21	□□□□□ -0.61
PRKCH-222	ENST00000556778	FRAT1	Q92837	279 aa	Predicted RBP	11.21	□□□□□ -0.61
PRKCH-222	ENST00000556778	MASTL	Q96GX5	879 aa		11.21	□□□□□ -0.61
PRKCH-222	ENST00000556778	NLRP3	Q96P20	1036 aa		11.21	□□□□□ -0.61
PRKCH-222	ENST00000556778	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.2	□□□□□ -0.62
PRKCH-222	ENST00000556778	PCCA	P05165	728 aa	Predicted RBP	11.2	□□□□□ -0.62
PRKCH-222	ENST00000556778	PRELP	P51888	382 aa		11.2	□□□□□ -0.62
PRKCH-222	ENST00000556778	CASP7	P55210	303 aa		11.2	□□□□□ -0.62
PRKCH-222	ENST00000556778	EPHA10	Q5JZY3	1008 aa		11.2	□□□□□ -0.62
PRKCH-222	ENST00000556778	PRPF40B	Q6NWY9	871 aa	Known RBP	11.2	□□□□□ -0.62
PRKCH-222	ENST00000556778	UBE3B	Q7Z3V4	1068 aa		11.2	□□□□□ -0.62
PRKCH-222	ENST00000556778	C7orf43	Q8WVR3	580 aa		11.2	□□□□□ -0.62
PRKCH-222	ENST00000556778	SCUBE2	Q9NQ36	999 aa		11.2	□□□□□ -0.62
PRKCH-222	ENST00000556778	SEC31B	Q9NQW1	1179 aa		11.2	□□□□□ -0.62
PRKCH-222	ENST00000556778	NRXN2	Q9P2S2	1712 aa		11.2	□□□□□ -0.62
PRKCH-222	ENST00000556778	NBPF7	P0C2Y1	421 aa	Predicted RBP	11.19	□□□□□ -0.62
PRKCH-222	ENST00000556778	HOXA10	P31260	410 aa	Predicted RBP	11.19	□□□□□ -0.62
PRKCH-222	ENST00000556778	RPGR	Q92834	1020 aa	Known RBP	11.19	□□□□□ -0.62
PRKCH-222	ENST00000556778	PTPRC	P08575	1304 aa		11.18	□□□□□ -0.62
PRKCH-222	ENST00000556778	GRIN3B	O60391	1043 aa		11.18	□□□□□ -0.62
PRKCH-222	ENST00000556778	BRPF1	P55201	1214 aa	Predicted RBP	11.18	□□□□□ -0.62
PRKCH-222	ENST00000556778	RASSF7	Q02833	373 aa		11.18	□□□□□ -0.62
PRKCH-222	ENST00000556778	SF3B3	Q15393	1217 aa	Known RBP	11.18	□□□□□ -0.62
PRKCH-222	ENST00000556778	CELF1	Q92879	486 aa	Known RBP	11.18	□□□□□ -0.62
PRKCH-222	ENST00000556778	CNKSR1	Q969H4	720 aa		11.18	□□□□□ -0.62
PRKCH-222	ENST00000556778	CLUAP1	Q96AJ1	413 aa		11.18	□□□□□ -0.62
PRKCH-222	ENST00000556778	RBM17	Q96I25	401 aa	Known RBP	11.18	□□□□□ -0.62
PRKCH-222	ENST00000556778	SRCIN1	Q9C0H9	1055 aa		11.18	□□□□□ -0.62
PRKCH-222	ENST00000556778	KIAA1551	Q9HCM1	1747 aa		11.18	□□□□□ -0.62
PRKCH-222	ENST00000556778	ABCC4	O15439	1325 aa		11.17	□□□□□ -0.62
PRKCH-222	ENST00000556778	NFKBIE	O00221	500 aa		11.17	□□□□□ -0.62
PRKCH-222	ENST00000556778	PDE8A	O60658	829 aa		11.17	□□□□□ -0.62
PRKCH-222	ENST00000556778	TRIM27	P14373	513 aa		11.17	□□□□□ -0.62
PRKCH-222	ENST00000556778	FOXO4	P98177	505 aa		11.17	□□□□□ -0.62
PRKCH-222	ENST00000556778	TTLL11	Q8NHH1	800 aa		11.17	□□□□□ -0.62
PRKCH-222	ENST00000556778	KAZALD1	Q96I82	304 aa		11.17	□□□□□ -0.62
PRKCH-222	ENST00000556778	CRAMP1	Q96RY5	1269 aa		11.17	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms