RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 NEXNQ0ZGT2 675 aa15.85■□□□□ 0.13
SHMT2-214ENST00000554604 GRAPQ13588 217 aa15.85■□□□□ 0.13
SHMT2-214ENST00000554604 KSR2Q6VAB6 950 aa15.85■□□□□ 0.13
SHMT2-214ENST00000554604 LARGE2Q8N3Y3 721 aa15.85■□□□□ 0.13
SHMT2-214ENST00000554604 ZBTB38Q8NAP3 1195 aaPredicted RBP15.85■□□□□ 0.13
SHMT2-214ENST00000554604 GRAPLQ8TC17 118 aaPredicted RBP15.85■□□□□ 0.13
SHMT2-214ENST00000554604 MYH16Q9H6N6 1097 aa15.85■□□□□ 0.13
SHMT2-214ENST00000554604 CWC25Q9NXE8 425 aaPredicted RBP15.85■□□□□ 0.13
SHMT2-214ENST00000554604 MYH3P11055 1940 aa15.84■□□□□ 0.13
SHMT2-214ENST00000554604 PI4KAP2A4QPH2 592 aa15.84■□□□□ 0.13
SHMT2-214ENST00000554604 IQCA1LA6NCM1 817 aa15.84■□□□□ 0.13
SHMT2-214ENST00000554604 POTECB2RU33 542 aa15.84■□□□□ 0.13
SHMT2-214ENST00000554604 TMC4Q7Z404 712 aa15.84■□□□□ 0.13
SHMT2-214ENST00000554604 SLC51AQ86UW1 340 aa15.84■□□□□ 0.13
SHMT2-214ENST00000554604 SP8Q8IXZ3 490 aa15.84■□□□□ 0.13
SHMT2-214ENST00000554604 PI4KAP1Q8N8J0 262 aa15.84■□□□□ 0.13
SHMT2-214ENST00000554604 ZNF521Q96K83 1311 aa15.84■□□□□ 0.13
SHMT2-214ENST00000554604 FZD9O00144 591 aa15.83■□□□□ 0.12
SHMT2-214ENST00000554604 EIF6P56537 245 aaKnown RBP15.83■□□□□ 0.12
SHMT2-214ENST00000554604 EXOSC9Q06265 439 aaKnown RBP15.83■□□□□ 0.12
SHMT2-214ENST00000554604 SF3B3Q15393 1217 aaKnown RBP15.83■□□□□ 0.12
SHMT2-214ENST00000554604 DPP8Q6V1X1 898 aaPredicted RBP15.83■□□□□ 0.12
SHMT2-214ENST00000554604 MPNDQ8N594 471 aa15.83■□□□□ 0.12
SHMT2-214ENST00000554604 SUPT20HQ8NEM7 779 aa15.83■□□□□ 0.12
SHMT2-214ENST00000554604 ZNF541Q9H0D2 1346 aa15.83■□□□□ 0.12
SHMT2-214ENST00000554604 PPIP5K2O43314 1243 aa15.82■□□□□ 0.12
SHMT2-214ENST00000554604 PCCAP05165 728 aaPredicted RBP15.82■□□□□ 0.12
SHMT2-214ENST00000554604 G2E3Q7L622 706 aa15.82■□□□□ 0.12
SHMT2-214ENST00000554604 NIM1KQ8IY84 436 aa15.82■□□□□ 0.12
SHMT2-214ENST00000554604 SPINK5Q9NQ38 1064 aaPredicted RBP15.82■□□□□ 0.12
SHMT2-214ENST00000554604 PPP4R2Q9NY27 417 aa15.82■□□□□ 0.12
SHMT2-214ENST00000554604 LRRC37AA6NMS7 1700 aa15.81■□□□□ 0.12
SHMT2-214ENST00000554604 VAMP4O75379 141 aa15.81■□□□□ 0.12
SHMT2-214ENST00000554604 IRX6P78412 446 aaPredicted RBP15.81■□□□□ 0.12
SHMT2-214ENST00000554604 FLIIQ13045 1269 aa15.81■□□□□ 0.12
SHMT2-214ENST00000554604 FKBP5Q13451 457 aaPredicted RBP15.81■□□□□ 0.12
SHMT2-214ENST00000554604 AOC3Q16853 763 aa15.81■□□□□ 0.12
SHMT2-214ENST00000554604 GPC2Q8N158 579 aa15.81■□□□□ 0.12
SHMT2-214ENST00000554604 JARID2Q92833 1246 aaPredicted RBP15.81■□□□□ 0.12
SHMT2-214ENST00000554604 L3MBTL3Q96JM7 780 aaPredicted RBP15.81■□□□□ 0.12
SHMT2-214ENST00000554604 VPS33BQ9H267 617 aa15.81■□□□□ 0.12
SHMT2-214ENST00000554604 PDE8AO60658 829 aa15.8■□□□□ 0.12
SHMT2-214ENST00000554604 CCDC152Q4G0S7 254 aa15.8■□□□□ 0.12
SHMT2-214ENST00000554604 CELF1Q92879 486 aaKnown RBP15.8■□□□□ 0.12
SHMT2-214ENST00000554604 GJA3Q9Y6H8 435 aa15.8■□□□□ 0.12
SHMT2-214ENST00000554604 COL4A5P29400 1685 aa15.79■□□□□ 0.12
SHMT2-214ENST00000554604 IGKV5-2P06315 115 aa15.79■□□□□ 0.12
SHMT2-214ENST00000554604 RPS8P62241 208 aaKnown RBP15.79■□□□□ 0.12
SHMT2-214ENST00000554604 RTFDC1Q9BY42 306 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-214ENST00000554604 HACL1Q9UJ83 578 aa15.79■□□□□ 0.12
SHMT2-214ENST00000554604 RCAN3Q9UKA8 241 aa15.79■□□□□ 0.12
SHMT2-214ENST00000554604 CWF19L2Q2TBE0 894 aaKnown RBP15.78■□□□□ 0.12
SHMT2-214ENST00000554604 EAPPQ56P03 285 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-214ENST00000554604 CDCA7LQ96GN5 454 aa15.78■□□□□ 0.12
SHMT2-214ENST00000554604 TAF1DQ9H5J8 278 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-214ENST00000554604 NSFL1CQ9UNZ2 370 aaKnown RBP15.78■□□□□ 0.12
SHMT2-214ENST00000554604 CDHR2Q9BYE9 1310 aa15.77■□□□□ 0.12
SHMT2-214ENST00000554604 NEURL1BA8MQ27 555 aa15.77■□□□□ 0.12
SHMT2-214ENST00000554604 LMOD1P29536 600 aaPredicted RBP15.77■□□□□ 0.12
SHMT2-214ENST00000554604 CHADLQ6NUI6 762 aa15.77■□□□□ 0.12
SHMT2-214ENST00000554604 DNAAF4Q8WXU2 420 aa15.77■□□□□ 0.12
SHMT2-214ENST00000554604 CCDC85AQ96PX6 553 aaPredicted RBP15.77■□□□□ 0.12
SHMT2-214ENST00000554604 SEC31BQ9NQW1 1179 aa15.77■□□□□ 0.12
SHMT2-214ENST00000554604 ZNRF3Q9ULT6 936 aa15.77■□□□□ 0.12
SHMT2-214ENST00000554604 SPEF2Q9C093 1822 aa15.77■□□□□ 0.11
SHMT2-214ENST00000554604 C6orf229H3BNL8 230 aa15.76■□□□□ 0.11
SHMT2-214ENST00000554604 POTEIP0CG38 1075 aa15.76■□□□□ 0.11
SHMT2-214ENST00000554604 POTEJP0CG39 1038 aa15.76■□□□□ 0.11
SHMT2-214ENST00000554604 EPHX2P34913 555 aa15.76■□□□□ 0.11
SHMT2-214ENST00000554604 KIAA2012Q0VF49 1180 aa15.76■□□□□ 0.11
SHMT2-214ENST00000554604 UBE3BQ7Z3V4 1068 aa15.76■□□□□ 0.11
SHMT2-214ENST00000554604 LDHDQ86WU2 507 aa15.76■□□□□ 0.11
SHMT2-214ENST00000554604 CLEC11AQ9Y240 323 aa15.76■□□□□ 0.11
SHMT2-214ENST00000554604 RRP1P56182 461 aaKnown RBP15.75■□□□□ 0.11
SHMT2-214ENST00000554604 CTSWP56202 376 aa15.75■□□□□ 0.11
SHMT2-214ENST00000554604 HTRA3P83110 453 aa15.75■□□□□ 0.11
SHMT2-214ENST00000554604 WASHC4Q2M389 1173 aa15.75■□□□□ 0.11
SHMT2-214ENST00000554604 PNMA8AQ86V59 439 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-214ENST00000554604 LINS1Q8NG48 757 aa15.75■□□□□ 0.11
SHMT2-214ENST00000554604 COL4A1P02462 1669 aa15.75■□□□□ 0.11
SHMT2-214ENST00000554604 DUOX1Q9NRD9 1551 aa15.75■□□□□ 0.11
SHMT2-214ENST00000554604 GPSM2P81274 684 aa15.74■□□□□ 0.11
SHMT2-214ENST00000554604 SLFN5Q08AF3 891 aa15.74■□□□□ 0.11
SHMT2-214ENST00000554604 GCKRQ14397 625 aa15.74■□□□□ 0.11
SHMT2-214ENST00000554604 ANKRD18AQ8IVF6 992 aa15.74■□□□□ 0.11
SHMT2-214ENST00000554604 TRMT2AQ8IZ69 625 aaKnown RBP15.74■□□□□ 0.11
SHMT2-214ENST00000554604 CDC5LQ99459 802 aaKnown RBP15.74■□□□□ 0.11
SHMT2-214ENST00000554604 EYA3Q99504 573 aa15.74■□□□□ 0.11
SHMT2-214ENST00000554604 ANKIB1Q9P2G1 1089 aa15.74■□□□□ 0.11
SHMT2-214ENST00000554604 E9PSI1 815 aa15.73■□□□□ 0.11
SHMT2-214ENST00000554604 CXCL9Q07325 125 aa15.73■□□□□ 0.11
SHMT2-214ENST00000554604 TNIP1Q15025 636 aa15.73■□□□□ 0.11
SHMT2-214ENST00000554604 LTBP1Q14766 1721 aa15.72■□□□□ 0.11
SHMT2-214ENST00000554604 F6X3S4 739 aa15.72■□□□□ 0.11
SHMT2-214ENST00000554604 H7C1W4 665 aa15.72■□□□□ 0.11
SHMT2-214ENST00000554604 RIMBP2O15034 1052 aa15.72■□□□□ 0.11
SHMT2-214ENST00000554604 RAD17O75943 681 aa15.72■□□□□ 0.11
SHMT2-214ENST00000554604 CIAPIN1Q6FI81 312 aa15.72■□□□□ 0.11
SHMT2-214ENST00000554604 DNAJC5GQ8N7S2 189 aa15.72■□□□□ 0.11
SHMT2-214ENST00000554604 TTLL11Q8NHH1 800 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms