RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 ZBTB12Q9Y330 459 aaPredicted RBP17.23■□□□□ 0.35
VPS29-211ENST00000553128 CDHR2Q9BYE9 1310 aa17.22■□□□□ 0.35
VPS29-211ENST00000553128 KIF23Q02241 960 aaPredicted RBP17.22■□□□□ 0.35
VPS29-211ENST00000553128 GIGYF2Q6Y7W6 1299 aaKnown RBP17.22■□□□□ 0.35
VPS29-211ENST00000553128 SAMD7Q7Z3H4 446 aa17.22■□□□□ 0.35
VPS29-211ENST00000553128 MICALL2Q8IY33 904 aa17.22■□□□□ 0.35
VPS29-211ENST00000553128 HTATSF1O43719 755 aaKnown RBP17.21■□□□□ 0.35
VPS29-211ENST00000553128 TRPA1O75762 1119 aa17.21■□□□□ 0.35
VPS29-211ENST00000553128 EIF4A1P60842 406 aaKnown RBP17.21■□□□□ 0.35
VPS29-211ENST00000553128 RGMBQ6NW40 437 aa17.21■□□□□ 0.35
VPS29-211ENST00000553128 MPNDQ8N594 471 aa17.21■□□□□ 0.35
VPS29-211ENST00000553128 SUPT20HQ8NEM7 779 aa17.21■□□□□ 0.35
VPS29-211ENST00000553128 RNF186Q9NXI6 227 aa17.21■□□□□ 0.35
VPS29-211ENST00000553128 ADM5C9JUS6 153 aa17.2■□□□□ 0.34
VPS29-211ENST00000553128 TNIP1Q15025 636 aa17.2■□□□□ 0.34
VPS29-211ENST00000553128 SLC10A5Q5PT55 438 aa17.2■□□□□ 0.34
VPS29-211ENST00000553128 PPP1R42Q7Z4L9 355 aa17.2■□□□□ 0.34
VPS29-211ENST00000553128 SP8Q8IXZ3 490 aa17.2■□□□□ 0.34
VPS29-211ENST00000553128 CFAP53Q96M91 514 aa17.2■□□□□ 0.34
VPS29-211ENST00000553128 THUMPD2Q9BTF0 503 aaKnown RBP17.2■□□□□ 0.34
VPS29-211ENST00000553128 TMX4Q9H1E5 349 aaPredicted RBP17.2■□□□□ 0.34
VPS29-211ENST00000553128 SAGE1Q9NXZ1 904 aa17.2■□□□□ 0.34
VPS29-211ENST00000553128 KDM3BQ7LBC6 1761 aa17.2■□□□□ 0.34
VPS29-211ENST00000553128 DUOX1Q9NRD9 1551 aa17.19■□□□□ 0.34
VPS29-211ENST00000553128 TBC1D10BQ4KMP7 808 aaPredicted RBP17.19■□□□□ 0.34
VPS29-211ENST00000553128 PRPF38BQ5VTL8 546 aaKnown RBP17.19■□□□□ 0.34
VPS29-211ENST00000553128 GBA2Q9HCG7 927 aaPredicted RBP17.19■□□□□ 0.34
VPS29-211ENST00000553128 H7C1D1 291 aa17.18■□□□□ 0.34
VPS29-211ENST00000553128 HCLS1P14317 486 aaPredicted RBP17.18■□□□□ 0.34
VPS29-211ENST00000553128 KRT26Q7Z3Y9 468 aa17.18■□□□□ 0.34
VPS29-211ENST00000553128 LRP10Q7Z4F1 713 aa17.18■□□□□ 0.34
VPS29-211ENST00000553128 UTP14AQ9BVJ6 771 aaKnown RBP17.18■□□□□ 0.34
VPS29-211ENST00000553128 NUDCQ9Y266 331 aa17.18■□□□□ 0.34
VPS29-211ENST00000553128 PSMD14O00487 310 aa17.17■□□□□ 0.34
VPS29-211ENST00000553128 BBOX1O75936 387 aa17.17■□□□□ 0.34
VPS29-211ENST00000553128 ZNF157P51786 506 aaPredicted RBP17.17■□□□□ 0.34
VPS29-211ENST00000553128 PARP10Q53GL7 1025 aa17.17■□□□□ 0.34
VPS29-211ENST00000553128 CSRNP1Q96S65 589 aa17.17■□□□□ 0.34
VPS29-211ENST00000553128 LAMB2P55268 1798 aa17.17■□□□□ 0.34
VPS29-211ENST00000553128 ANXA1P04083 346 aa17.16■□□□□ 0.34
VPS29-211ENST00000553128 PROSER3Q2NL68 480 aa17.16■□□□□ 0.34
VPS29-211ENST00000553128 RBM26Q5T8P6 1007 aaKnown RBP17.16■□□□□ 0.34
VPS29-211ENST00000553128 C2orf69Q8N8R5 385 aa17.16■□□□□ 0.34
VPS29-211ENST00000553128 ZNF428Q96B54 188 aa17.16■□□□□ 0.34
VPS29-211ENST00000553128 KCNQ5Q9NR82 932 aa17.16■□□□□ 0.34
VPS29-211ENST00000553128 TAF1P21675 1872 aa17.16■□□□□ 0.34
VPS29-211ENST00000553128 PDIA6Q15084 440 aa17.15■□□□□ 0.34
VPS29-211ENST00000553128 CTU1Q7Z7A3 348 aaKnown RBP17.15■□□□□ 0.34
VPS29-211ENST00000553128 DPF2Q92785 391 aa17.15■□□□□ 0.34
VPS29-211ENST00000553128 CCDC102AQ96A19 550 aa17.15■□□□□ 0.34
VPS29-211ENST00000553128 DBNDD1Q9H9R9 158 aa17.15■□□□□ 0.34
VPS29-211ENST00000553128 ASTN2O75129 1339 aaPredicted RBP17.15■□□□□ 0.34
VPS29-211ENST00000553128 MKI67P46013 3256 aaKnown RBP17.14■□□□□ 0.33
VPS29-211ENST00000553128 SLC10A3P09131 477 aa17.14■□□□□ 0.33
VPS29-211ENST00000553128 PPP2R1AP30153 589 aa17.14■□□□□ 0.33
VPS29-211ENST00000553128 GRAPQ13588 217 aa17.14■□□□□ 0.33
VPS29-211ENST00000553128 GRAPLQ8TC17 118 aaPredicted RBP17.14■□□□□ 0.33
VPS29-211ENST00000553128 PNISRQ8TF01 805 aaKnown RBP17.14■□□□□ 0.33
VPS29-211ENST00000553128 HPS5Q9UPZ3 1129 aa17.14■□□□□ 0.33
VPS29-211ENST00000553128 POLR2AP24928 1970 aaKnown RBP17.13■□□□□ 0.33
VPS29-211ENST00000553128 DDX46Q7L014 1031 aaKnown RBP17.13■□□□□ 0.33
VPS29-211ENST00000553128 COL4A1P02462 1669 aa17.13■□□□□ 0.33
VPS29-211ENST00000553128 RTL9Q8NET4 1388 aa17.13■□□□□ 0.33
VPS29-211ENST00000553128 DLG5Q8TDM6 1919 aa17.12■□□□□ 0.33
VPS29-211ENST00000553128 RIMBP2O15034 1052 aa17.12■□□□□ 0.33
VPS29-211ENST00000553128 NLRP10Q86W26 655 aa17.12■□□□□ 0.33
VPS29-211ENST00000553128 DCPSQ96C86 337 aaKnown RBP17.12■□□□□ 0.33
VPS29-211ENST00000553128 ANKRD36CQ5JPF3 1778 aa17.12■□□□□ 0.33
VPS29-211ENST00000553128 EIF2S2P20042 333 aaKnown RBP17.11■□□□□ 0.33
VPS29-211ENST00000553128 POLLQ9UGP5 575 aa17.11■□□□□ 0.33
VPS29-211ENST00000553128 ERBB4Q15303 1308 aa17.11■□□□□ 0.33
VPS29-211ENST00000553128 LRRC37AA6NMS7 1700 aa17.1■□□□□ 0.33
VPS29-211ENST00000553128 AKAP11Q9UKA4 1901 aa17.1■□□□□ 0.33
VPS29-211ENST00000553128 DOK7Q18PE1 504 aa17.1■□□□□ 0.33
VPS29-211ENST00000553128 WASHC4Q2M389 1173 aa17.1■□□□□ 0.33
VPS29-211ENST00000553128 RASAL3Q86YV0 1011 aa17.1■□□□□ 0.33
VPS29-211ENST00000553128 GGA3Q9NZ52 723 aa17.1■□□□□ 0.33
VPS29-211ENST00000553128 ECE2O60344 883 aa17.09■□□□□ 0.33
VPS29-211ENST00000553128 KIF4BQ2VIQ3 1234 aa17.09■□□□□ 0.33
VPS29-211ENST00000553128 CELF1Q92879 486 aaKnown RBP17.09■□□□□ 0.33
VPS29-211ENST00000553128 CDCA5Q96FF9 252 aa17.09■□□□□ 0.33
VPS29-211ENST00000553128 TRMT112Q9UI30 125 aaKnown RBP17.09■□□□□ 0.33
VPS29-211ENST00000553128 NSFL1CQ9UNZ2 370 aaKnown RBP17.09■□□□□ 0.33
VPS29-211ENST00000553128 GPSM2P81274 684 aa17.08■□□□□ 0.32
VPS29-211ENST00000553128 AIMP1Q12904 312 aaKnown RBP17.08■□□□□ 0.32
VPS29-211ENST00000553128 COPS6Q7L5N1 327 aa17.08■□□□□ 0.32
VPS29-211ENST00000553128 NECTIN2Q92692 538 aa17.08■□□□□ 0.32
VPS29-211ENST00000553128 PLEKHF1Q96S99 279 aa17.08■□□□□ 0.32
VPS29-211ENST00000553128 HTTP42858 3142 aa17.07■□□□□ 0.32
VPS29-211ENST00000553128 SH3TC1Q8TE82 1336 aa17.07■□□□□ 0.32
VPS29-211ENST00000553128 C6orf229H3BNL8 230 aa17.07■□□□□ 0.32
VPS29-211ENST00000553128 TBC1D8O95759 1140 aa17.07■□□□□ 0.32
VPS29-211ENST00000553128 RPS12P25398 132 aaKnown RBP17.07■□□□□ 0.32
VPS29-211ENST00000553128 MOB2Q70IA6 237 aa17.07■□□□□ 0.32
VPS29-211ENST00000553128 SULF1Q8IWU6 871 aa17.07■□□□□ 0.32
VPS29-211ENST00000553128 XAGE3Q8WTP9 111 aa17.07■□□□□ 0.32
VPS29-211ENST00000553128 ZNF296Q8WUU4 475 aaPredicted RBP17.07■□□□□ 0.32
VPS29-211ENST00000553128 SCAF8Q9UPN6 1271 aaKnown RBP17.07■□□□□ 0.32
VPS29-211ENST00000553128 TCIRG1Q13488 830 aa17.06■□□□□ 0.32
VPS29-211ENST00000553128 NFE2L2Q16236 605 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms