RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 PDE4CQ08493 712 aa5.72□□□□□ -1.49
LIMA1-214ENST00000552783 E4F1Q66K89 784 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-214ENST00000552783 CCAR2Q8N163 923 aaKnown RBP5.72□□□□□ -1.49
LIMA1-214ENST00000552783 KCNB2Q92953 911 aa5.72□□□□□ -1.49
LIMA1-214ENST00000552783 KIF1BPQ96EK5 621 aa5.72□□□□□ -1.49
LIMA1-214ENST00000552783 ZCCHC17Q9NP64 241 aaKnown RBP5.72□□□□□ -1.49
LIMA1-214ENST00000552783 PI4KAP2A4QPH2 592 aa5.72□□□□□ -1.49
LIMA1-214ENST00000552783 GOLGA6L4A6NEF3 574 aa5.72□□□□□ -1.49
LIMA1-214ENST00000552783 GNAT3A8MTJ3 354 aa5.72□□□□□ -1.49
LIMA1-214ENST00000552783 LTKP29376 864 aa5.72□□□□□ -1.49
LIMA1-214ENST00000552783 ADD1P35611 737 aaKnown RBP5.72□□□□□ -1.49
LIMA1-214ENST00000552783 HNRNPH2P55795 449 aaKnown RBP5.72□□□□□ -1.49
LIMA1-214ENST00000552783 PI4KAP1Q8N8J0 262 aa5.72□□□□□ -1.49
LIMA1-214ENST00000552783 SH2B1Q9NRF2 756 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-214ENST00000552783 NPHP4O75161 1426 aaPredicted RBP5.71□□□□□ -1.49
LIMA1-214ENST00000552783 DIP2CQ9Y2E4 1556 aa5.71□□□□□ -1.49
LIMA1-214ENST00000552783 SETD1AO15047 1707 aaKnown RBP5.71□□□□□ -1.49
LIMA1-214ENST00000552783 COL15A1P39059 1388 aa5.71□□□□□ -1.49
LIMA1-214ENST00000552783 NPHP3Q7Z494 1330 aa5.71□□□□□ -1.49
LIMA1-214ENST00000552783 PLA2G4AP47712 749 aa5.71□□□□□ -1.5
LIMA1-214ENST00000552783 CLCN6P51797 869 aa5.71□□□□□ -1.5
LIMA1-214ENST00000552783 SNW1Q13573 536 aaKnown RBP5.71□□□□□ -1.5
LIMA1-214ENST00000552783 SLFNL1Q499Z3 407 aa5.71□□□□□ -1.5
LIMA1-214ENST00000552783 MPRIPQ6WCQ1 1025 aa5.71□□□□□ -1.5
LIMA1-214ENST00000552783 KLHDC4Q8TBB5 520 aa5.71□□□□□ -1.5
LIMA1-214ENST00000552783 MAP4K1Q92918 833 aa5.71□□□□□ -1.5
LIMA1-214ENST00000552783 BRF1Q92994 677 aa5.71□□□□□ -1.5
LIMA1-214ENST00000552783 SEC62Q99442 399 aaKnown RBP5.71□□□□□ -1.5
LIMA1-214ENST00000552783 CCDC8Q9H0W5 538 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-214ENST00000552783 SIL1Q9H173 461 aa5.71□□□□□ -1.5
LIMA1-214ENST00000552783 RGPD1P0DJD0 1748 aa5.71□□□□□ -1.5
LIMA1-214ENST00000552783 FAM208AQ9UK61 1670 aaKnown RBP5.71□□□□□ -1.5
LIMA1-214ENST00000552783 MON2Q7Z3U7 1717 aa5.71□□□□□ -1.5
LIMA1-214ENST00000552783 EPB41L2O43491 1005 aaKnown RBP5.71□□□□□ -1.5
LIMA1-214ENST00000552783 RESTQ13127 1097 aa5.71□□□□□ -1.5
LIMA1-214ENST00000552783 C1orf141Q5JVX7 400 aa5.71□□□□□ -1.5
LIMA1-214ENST00000552783 BEND3Q5T5X7 828 aa5.71□□□□□ -1.5
LIMA1-214ENST00000552783 GORABQ5T7V8 394 aa5.71□□□□□ -1.5
LIMA1-214ENST00000552783 SYT10Q6XYQ8 523 aa5.71□□□□□ -1.5
LIMA1-214ENST00000552783 NEK11Q8NG66 645 aa5.71□□□□□ -1.5
LIMA1-214ENST00000552783 CHPF2Q9P2E5 772 aa5.71□□□□□ -1.5
LIMA1-214ENST00000552783 A0A0G2JLW4 131 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 SEC31AO94979 1220 aaKnown RBP5.7□□□□□ -1.5
LIMA1-214ENST00000552783 H2AFXP16104 143 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-214ENST00000552783 ST5P78524 1137 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 GOLGA8FQ08AF8 430 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 GOLGA8DPQ0D2H9 430 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 ZNF530Q6P9A1 599 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-214ENST00000552783 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-214ENST00000552783 CERS3Q8IU89 383 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 EAF2Q96CJ1 260 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-214ENST00000552783 ZSCAN31Q96LW9 406 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-214ENST00000552783 TM6SF1Q9BZW5 370 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 DDX19AQ9NUU7 478 aaKnown RBP5.7□□□□□ -1.5
LIMA1-214ENST00000552783 TNRQ92752 1358 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 CRYBG1Q9Y4K1 1723 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 OVOS2A0A0J9YW53 1432 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 OVOS2Q6IE36 1432 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 TULP2O00295 520 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 POLR3GO15318 223 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-214ENST00000552783 GLRX3O76003 335 aaKnown RBP5.7□□□□□ -1.5
LIMA1-214ENST00000552783 GYS2P54840 703 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 C1QBPQ07021 282 aaKnown RBP5.7□□□□□ -1.5
LIMA1-214ENST00000552783 CWF19L2Q2TBE0 894 aaKnown RBP5.7□□□□□ -1.5
LIMA1-214ENST00000552783 ARMCX5Q6P1M9 558 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 AACSQ86V21 672 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 AOPEPQ8N6M6 819 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 CHMP4AQ9BY43 222 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 SCAND2PQ9GZW5 306 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-214ENST00000552783 BOLA2Q9H3K6 86 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 ARHGEF10O15013 1369 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 MAP3K5Q99683 1374 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 PRAMEF22A3QJZ6 481 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 SASH1O94885 1247 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 PNMA6AP0CW24 399 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-214ENST00000552783 RPS6KB1P23443 525 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 CYP2C19P33261 490 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 GUCY1B3Q02153 619 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 PROSER3Q2NL68 480 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 CCDC129Q6ZRS4 1044 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 ERO1AQ96HE7 468 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 PPP1R13BQ96KQ4 1090 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 TIGD1Q96MW7 591 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 ECHDC1Q9NTX5 307 aa5.7□□□□□ -1.5
LIMA1-214ENST00000552783 ROBO2Q9HCK4 1378 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 SASH3O75995 380 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 SLU7O95391 586 aaKnown RBP5.69□□□□□ -1.5
LIMA1-214ENST00000552783 MYL6BP14649 208 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 ZKSCAN1P17029 563 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-214ENST00000552783 ZC3H6P61129 1189 aaKnown RBP5.69□□□□□ -1.5
LIMA1-214ENST00000552783 CCDC93Q567U6 631 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 TAF3Q5VWG9 929 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 BLOC1S2Q6QNY1 142 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 SARM1Q6SZW1 724 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 ILDR1Q86SU0 546 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-214ENST00000552783 CCAR1Q8IX12 1150 aaKnown RBP5.69□□□□□ -1.5
LIMA1-214ENST00000552783 LRRC59Q96AG4 307 aaKnown RBP5.69□□□□□ -1.5
LIMA1-214ENST00000552783 MRFAP1L1Q96HT8 127 aa5.69□□□□□ -1.5
LIMA1-214ENST00000552783 ZFP91Q96JP5 570 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-214ENST00000552783 USP28Q96RU2 1077 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms