RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 SERTM1A2A2V5 107 aa8.78□□□□□ -1
VPS29-210ENST00000552130 C9orf172C9J069 976 aa8.78□□□□□ -1
VPS29-210ENST00000552130 SKIP12755 728 aa8.78□□□□□ -1
VPS29-210ENST00000552130 SELPP16109 830 aa8.78□□□□□ -1
VPS29-210ENST00000552130 MBTPS1Q14703 1052 aa8.78□□□□□ -1
VPS29-210ENST00000552130 CDCA8Q53HL2 280 aa8.78□□□□□ -1
VPS29-210ENST00000552130 ZNF326Q5BKZ1 582 aaKnown RBP8.78□□□□□ -1
VPS29-210ENST00000552130 TBCELQ5QJ74 424 aa8.78□□□□□ -1
VPS29-210ENST00000552130 DPH6Q7L8W6 267 aa8.78□□□□□ -1
VPS29-210ENST00000552130 PPME1Q9Y570 386 aa8.78□□□□□ -1
VPS29-210ENST00000552130 ZBTB7BO15156 539 aaPredicted RBP8.77□□□□□ -1.01
VPS29-210ENST00000552130 NEFLP07196 543 aa8.77□□□□□ -1.01
VPS29-210ENST00000552130 RAB44Q7Z6P3 723 aaPredicted RBP8.77□□□□□ -1.01
VPS29-210ENST00000552130 BRD7Q9NPI1 651 aa8.77□□□□□ -1.01
VPS29-210ENST00000552130 IRX6P78412 446 aaPredicted RBP8.76□□□□□ -1.01
VPS29-210ENST00000552130 TYRO3Q06418 890 aa8.76□□□□□ -1.01
VPS29-210ENST00000552130 RHPN1Q8TCX5 695 aa8.76□□□□□ -1.01
VPS29-210ENST00000552130 MYH16Q9H6N6 1097 aa8.76□□□□□ -1.01
VPS29-210ENST00000552130 NEUROD4Q9HD90 331 aa8.76□□□□□ -1.01
VPS29-210ENST00000552130 ZNF232Q9UNY5 417 aa8.76□□□□□ -1.01
VPS29-210ENST00000552130 A0A0A0MRY4 1105 aa8.75□□□□□ -1.01
VPS29-210ENST00000552130 ELNP15502 786 aa8.75□□□□□ -1.01
VPS29-210ENST00000552130 NEUROD1Q13562 356 aa8.75□□□□□ -1.01
VPS29-210ENST00000552130 EXOC8Q8IYI6 725 aa8.75□□□□□ -1.01
VPS29-210ENST00000552130 LENG1Q96BZ8 264 aaPredicted RBP8.75□□□□□ -1.01
VPS29-210ENST00000552130 HSH2DQ96JZ2 352 aa8.75□□□□□ -1.01
VPS29-210ENST00000552130 KCNH4Q9UQ05 1017 aa8.75□□□□□ -1.01
VPS29-210ENST00000552130 RAB11FIP3O75154 756 aa8.74□□□□□ -1.01
VPS29-210ENST00000552130 PSMA6P60900 246 aaKnown RBP8.74□□□□□ -1.01
VPS29-210ENST00000552130 PSME1Q06323 249 aa8.74□□□□□ -1.01
VPS29-210ENST00000552130 SSBP4Q9BWG4 385 aaPredicted RBP8.74□□□□□ -1.01
VPS29-210ENST00000552130 ANKIB1Q9P2G1 1089 aa8.74□□□□□ -1.01
VPS29-210ENST00000552130 KIAA1024Q9UPX6 916 aa8.74□□□□□ -1.01
VPS29-210ENST00000552130 USP17L5A8MUK1 530 aa8.73□□□□□ -1.01
VPS29-210ENST00000552130 LILRB5O75023 590 aa8.73□□□□□ -1.01
VPS29-210ENST00000552130 RECKO95980 971 aa8.73□□□□□ -1.01
VPS29-210ENST00000552130 LRP8Q14114 963 aa8.73□□□□□ -1.01
VPS29-210ENST00000552130 NOP9Q86U38 636 aaKnown RBP8.73□□□□□ -1.01
VPS29-210ENST00000552130 TXNRD3Q86VQ6 643 aa8.73□□□□□ -1.01
VPS29-210ENST00000552130 NPAS4Q8IUM7 802 aa8.73□□□□□ -1.01
VPS29-210ENST00000552130 ZNF280CQ8ND82 737 aa8.73□□□□□ -1.01
VPS29-210ENST00000552130 CEP63Q96MT8 703 aa8.73□□□□□ -1.01
VPS29-210ENST00000552130 TSPAN10Q9H1Z9 355 aaPredicted RBP8.73□□□□□ -1.01
VPS29-210ENST00000552130 TFIP11Q9UBB9 837 aaKnown RBP8.73□□□□□ -1.01
VPS29-210ENST00000552130 SUGT1Q9Y2Z0 365 aa8.73□□□□□ -1.01
VPS29-210ENST00000552130 M0R2N6 131 aa8.72□□□□□ -1.01
VPS29-210ENST00000552130 TPD52L2O43399 206 aaKnown RBP8.72□□□□□ -1.01
VPS29-210ENST00000552130 TRAPPC3LQ5T215 181 aa8.72□□□□□ -1.01
VPS29-210ENST00000552130 SUSD3Q96L08 255 aa8.72□□□□□ -1.01
VPS29-210ENST00000552130 PHACTR1Q9C0D0 580 aa8.72□□□□□ -1.01
VPS29-210ENST00000552130 TMA7Q9Y2S6 64 aaKnown RBP8.72□□□□□ -1.01
VPS29-210ENST00000552130 ANKRD33BA6NCL7 494 aa8.71□□□□□ -1.02
VPS29-210ENST00000552130 SOWAHDA6NJG2 315 aa8.71□□□□□ -1.02
VPS29-210ENST00000552130 SFI1A8K8P3 1242 aa8.71□□□□□ -1.02
VPS29-210ENST00000552130 ARID4AP29374 1257 aaPredicted RBP8.71□□□□□ -1.02
VPS29-210ENST00000552130 CLDN10P78369 228 aa8.71□□□□□ -1.02
VPS29-210ENST00000552130 NRG1Q02297 640 aaPredicted RBP8.71□□□□□ -1.02
VPS29-210ENST00000552130 GORABQ5T7V8 394 aa8.71□□□□□ -1.02
VPS29-210ENST00000552130 PHLDB3Q6NSJ2 640 aa8.71□□□□□ -1.02
VPS29-210ENST00000552130 PLEKHM2Q8IWE5 1019 aa8.71□□□□□ -1.02
VPS29-210ENST00000552130 DEPDC4Q8N2C3 294 aa8.71□□□□□ -1.02
VPS29-210ENST00000552130 EFCC1Q9HA90 598 aa8.71□□□□□ -1.02
VPS29-210ENST00000552130 ERCC5P28715 1186 aaPredicted RBP8.7□□□□□ -1.02
VPS29-210ENST00000552130 TRIM50Q86XT4 487 aa8.7□□□□□ -1.02
VPS29-210ENST00000552130 TPCN2Q8NHX9 752 aa8.7□□□□□ -1.02
VPS29-210ENST00000552130 SLC6A14Q9UN76 642 aa8.7□□□□□ -1.02
VPS29-210ENST00000552130 HCN4Q9Y3Q4 1203 aa8.7□□□□□ -1.02
VPS29-210ENST00000552130 HYAL3O43820 417 aaPredicted RBP8.69□□□□□ -1.02
VPS29-210ENST00000552130 DKK1O94907 266 aa8.69□□□□□ -1.02
VPS29-210ENST00000552130 AFF1P51825 1210 aaKnown RBP8.69□□□□□ -1.02
VPS29-210ENST00000552130 CCDC102BQ68D86 513 aa8.69□□□□□ -1.02
VPS29-210ENST00000552130 SHISA2Q6UWI4 295 aa8.69□□□□□ -1.02
VPS29-210ENST00000552130 BHMTQ93088 406 aa8.69□□□□□ -1.02
VPS29-210ENST00000552130 UCN2Q96RP3 112 aa8.69□□□□□ -1.02
VPS29-210ENST00000552130 BTBD11A6QL63 1104 aa8.68□□□□□ -1.02
VPS29-210ENST00000552130 C21orf2O43822 256 aa8.68□□□□□ -1.02
VPS29-210ENST00000552130 NBPF11Q86T75 865 aa8.68□□□□□ -1.02
VPS29-210ENST00000552130 FMR1NBQ8N0W7 255 aaPredicted RBP8.68□□□□□ -1.02
VPS29-210ENST00000552130 STAG2Q8N3U4 1231 aa8.68□□□□□ -1.02
VPS29-210ENST00000552130 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.68□□□□□ -1.02
VPS29-210ENST00000552130 MAFBQ9Y5Q3 323 aaPredicted RBP8.68□□□□□ -1.02
VPS29-210ENST00000552130 ATP1A2P50993 1020 aa8.67□□□□□ -1.02
VPS29-210ENST00000552130 RAC1P63000 192 aa8.67□□□□□ -1.02
VPS29-210ENST00000552130 BTLAQ7Z6A9 289 aa8.67□□□□□ -1.02
VPS29-210ENST00000552130 UBE2OQ9C0C9 1292 aaKnown RBP8.67□□□□□ -1.02
VPS29-210ENST00000552130 METTL14Q9HCE5 456 aaKnown RBP8.67□□□□□ -1.02
VPS29-210ENST00000552130 SLC52A1Q9NWF4 448 aa8.67□□□□□ -1.02
VPS29-210ENST00000552130 NAGPAQ9UK23 515 aa8.67□□□□□ -1.02
VPS29-210ENST00000552130 SBNO2Q9Y2G9 1366 aa8.66□□□□□ -1.02
VPS29-210ENST00000552130 TSNAXIP1Q2TAA8 658 aa8.66□□□□□ -1.02
VPS29-210ENST00000552130 CCDC181Q5TID7 509 aa8.66□□□□□ -1.02
VPS29-210ENST00000552130 TMEM164Q5U3C3 297 aa8.66□□□□□ -1.02
VPS29-210ENST00000552130 KRTAP19-1Q8IUB9 90 aa8.66□□□□□ -1.02
VPS29-210ENST00000552130 LARGE2Q8N3Y3 721 aa8.66□□□□□ -1.02
VPS29-210ENST00000552130 DNAJC2Q99543 621 aaKnown RBP8.66□□□□□ -1.02
VPS29-210ENST00000552130 KRTAP9-9Q9BYP9 154 aa8.66□□□□□ -1.02
VPS29-210ENST00000552130 KRTAP9-4Q9BYQ2 154 aa8.66□□□□□ -1.02
VPS29-210ENST00000552130 GSX2Q9BZM3 304 aa8.66□□□□□ -1.02
VPS29-210ENST00000552130 JPH1Q9HDC5 661 aaPredicted RBP8.66□□□□□ -1.02
VPS29-210ENST00000552130 USP17L3A6NCW0 530 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms