RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 CYP2E1P05181 493 aaPredicted RBP13.35□□□□□ -0.27
CUX1-212ENST00000547394 CYP19A1P11511 503 aaPredicted RBP13.35□□□□□ -0.27
CUX1-212ENST00000547394 RBM27Q9P2N5 1060 aaKnown RBP13.35□□□□□ -0.27
CUX1-212ENST00000547394 SNAP23O00161 211 aa13.34□□□□□ -0.27
CUX1-212ENST00000547394 TAF7LQ5H9L4 462 aa13.34□□□□□ -0.27
CUX1-212ENST00000547394 CCDC83Q8IWF9 413 aa13.34□□□□□ -0.27
CUX1-212ENST00000547394 ISCA1Q9BUE6 129 aa13.34□□□□□ -0.27
CUX1-212ENST00000547394 NSFL1CQ9UNZ2 370 aaKnown RBP13.34□□□□□ -0.27
CUX1-212ENST00000547394 ERBB4Q15303 1308 aa13.34□□□□□ -0.27
CUX1-212ENST00000547394 A0A1B0GUL7 405 aa13.34□□□□□ -0.27
CUX1-212ENST00000547394 PPFIA3O75145 1194 aa13.34□□□□□ -0.27
CUX1-212ENST00000547394 NUCB2P80303 420 aa13.34□□□□□ -0.27
CUX1-212ENST00000547394 FKBP4Q02790 459 aaKnown RBP eCLIP13.34□□□□□ -0.27
CUX1-212ENST00000547394 CCDC57Q2TAC2 916 aa13.34□□□□□ -0.27
CUX1-212ENST00000547394 DDB1Q16531 1140 aa13.34□□□□□ -0.27
CUX1-212ENST00000547394 VPS53Q5VIR6 699 aa13.34□□□□□ -0.27
CUX1-212ENST00000547394 PTF1AQ7RTS3 328 aa13.34□□□□□ -0.27
CUX1-212ENST00000547394 TTC14Q96N46 770 aa13.34□□□□□ -0.27
CUX1-212ENST00000547394 LRRC2Q9BYS8 371 aa13.34□□□□□ -0.27
CUX1-212ENST00000547394 GREM2Q9H772 168 aa13.34□□□□□ -0.27
CUX1-212ENST00000547394 GOLGA6L3A6NEY3 463 aa13.33□□□□□ -0.28
CUX1-212ENST00000547394 EYA2O00167 538 aa13.33□□□□□ -0.28
CUX1-212ENST00000547394 SLC27A2O14975 620 aa13.33□□□□□ -0.28
CUX1-212ENST00000547394 XRCC6P12956 609 aaKnown RBP eCLIP13.33□□□□□ -0.28
CUX1-212ENST00000547394 ATP5JP18859 108 aa13.33□□□□□ -0.28
CUX1-212ENST00000547394 STK3Q13188 491 aa13.33□□□□□ -0.28
CUX1-212ENST00000547394 NECTIN1Q15223 517 aa13.33□□□□□ -0.28
CUX1-212ENST00000547394 MARCH10Q8NA82 808 aaPredicted RBP13.33□□□□□ -0.28
CUX1-212ENST00000547394 HELBQ8NG08 1087 aaPredicted RBP13.33□□□□□ -0.28
CUX1-212ENST00000547394 PDRG1Q9NUG6 133 aa13.33□□□□□ -0.28
CUX1-212ENST00000547394 CAVIN1Q6NZI2 390 aaKnown RBP13.33□□□□□ -0.28
CUX1-212ENST00000547394 TRMT112Q9UI30 125 aaKnown RBP13.33□□□□□ -0.28
CUX1-212ENST00000547394 HCLS1P14317 486 aaPredicted RBP13.32□□□□□ -0.28
CUX1-212ENST00000547394 CUL4AQ13619 759 aa13.32□□□□□ -0.28
CUX1-212ENST00000547394 SCARF1Q14162 830 aa13.32□□□□□ -0.28
CUX1-212ENST00000547394 CWC22Q9HCG8 908 aaKnown RBP13.32□□□□□ -0.28
CUX1-212ENST00000547394 BCL9O00512 1426 aa13.32□□□□□ -0.28
CUX1-212ENST00000547394 MAP3K15Q6ZN16 1313 aa13.32□□□□□ -0.28
CUX1-212ENST00000547394 FAM98CQ17RN3 349 aaKnown RBP13.32□□□□□ -0.28
CUX1-212ENST00000547394 NLRP10Q86W26 655 aa13.32□□□□□ -0.28
CUX1-212ENST00000547394 DZIP3Q86Y13 1208 aaKnown RBP13.32□□□□□ -0.28
CUX1-212ENST00000547394 MAP4K1Q92918 833 aa13.32□□□□□ -0.28
CUX1-212ENST00000547394 ZNF609O15014 1411 aa13.32□□□□□ -0.28
CUX1-212ENST00000547394 GOLGA6L22H0YM25 854 aa13.31□□□□□ -0.28
CUX1-212ENST00000547394 ATP6V1AP38606 617 aa13.31□□□□□ -0.28
CUX1-212ENST00000547394 GORABQ5T7V8 394 aa13.31□□□□□ -0.28
CUX1-212ENST00000547394 C8orf37Q96NL8 207 aa13.31□□□□□ -0.28
CUX1-212ENST00000547394 LMBRD1Q9NUN5 540 aa13.31□□□□□ -0.28
CUX1-212ENST00000547394 LAMB4A4D0S4 1761 aa13.31□□□□□ -0.28
CUX1-212ENST00000547394 UBR2Q8IWV8 1755 aa13.31□□□□□ -0.28
CUX1-212ENST00000547394 TAF5LO75529 589 aa13.31□□□□□ -0.28
CUX1-212ENST00000547394 GIGYF2Q6Y7W6 1299 aaKnown RBP13.31□□□□□ -0.28
CUX1-212ENST00000547394 ANO8Q9HCE9 1232 aaPredicted RBP13.31□□□□□ -0.28
CUX1-212ENST00000547394 DISP2A7MBM2 1401 aa13.31□□□□□ -0.28
CUX1-212ENST00000547394 ZKSCAN1P17029 563 aaPredicted RBP13.3□□□□□ -0.28
CUX1-212ENST00000547394 IL15P40933 162 aaPredicted RBP13.3□□□□□ -0.28
CUX1-212ENST00000547394 ME3Q16798 604 aa13.3□□□□□ -0.28
CUX1-212ENST00000547394 HAUS7Q99871 368 aa13.3□□□□□ -0.28
CUX1-212ENST00000547394 PAG1Q9NWQ8 432 aa13.3□□□□□ -0.28
CUX1-212ENST00000547394 CEP126Q9P2H0 1117 aa13.3□□□□□ -0.28
CUX1-212ENST00000547394 CYP46A1Q9Y6A2 500 aa13.3□□□□□ -0.28
CUX1-212ENST00000547394 SPATA31A1Q5TZJ5 1347 aa13.3□□□□□ -0.28
CUX1-212ENST00000547394 UBN2Q6ZU65 1347 aa13.3□□□□□ -0.28
CUX1-212ENST00000547394 IFIT1P09914 478 aaKnown RBP13.3□□□□□ -0.28
CUX1-212ENST00000547394 ITGA6P23229 1130 aa13.3□□□□□ -0.28
CUX1-212ENST00000547394 MCM2P49736 904 aa13.3□□□□□ -0.28
CUX1-212ENST00000547394 ST3GAL1Q11201 340 aa13.3□□□□□ -0.28
CUX1-212ENST00000547394 GPT2Q8TD30 523 aa13.3□□□□□ -0.28
CUX1-212ENST00000547394 TPCN1Q9ULQ1 816 aa13.3□□□□□ -0.28
CUX1-212ENST00000547394 LIMCH1Q9UPQ0 1083 aa13.3□□□□□ -0.28
CUX1-212ENST00000547394 IRS4O14654 1257 aaPredicted RBP13.3□□□□□ -0.28
CUX1-212ENST00000547394 IFIT5Q13325 482 aaKnown RBP13.3□□□□□ -0.28
CUX1-212ENST00000547394 ITPK1Q13572 414 aa13.3□□□□□ -0.28
CUX1-212ENST00000547394 ZBTB38Q8NAP3 1195 aaPredicted RBP13.3□□□□□ -0.28
CUX1-212ENST00000547394 XAGE2Q96GT9 111 aa13.29□□□□□ -0.28
CUX1-212ENST00000547394 COL16A1Q07092 1604 aaPredicted RBP13.29□□□□□ -0.28
CUX1-212ENST00000547394 TJP1Q07157 1748 aa13.29□□□□□ -0.28
CUX1-212ENST00000547394 MED23Q9ULK4 1368 aa13.29□□□□□ -0.28
CUX1-212ENST00000547394 BRD1O95696 1058 aa13.29□□□□□ -0.28
CUX1-212ENST00000547394 LDHAL6AQ6ZMR3 332 aa13.29□□□□□ -0.28
CUX1-212ENST00000547394 CHST3Q7LGC8 479 aa13.29□□□□□ -0.28
CUX1-212ENST00000547394 ITGB4P16144 1822 aa13.28□□□□□ -0.28
CUX1-212ENST00000547394 PCCAP05165 728 aaPredicted RBP13.28□□□□□ -0.28
CUX1-212ENST00000547394 CRKLP46109 303 aaKnown RBP13.28□□□□□ -0.28
CUX1-212ENST00000547394 METTL24Q5JXM2 366 aa13.28□□□□□ -0.28
CUX1-212ENST00000547394 TTLL5Q6EMB2 1281 aa13.28□□□□□ -0.28
CUX1-212ENST00000547394 TTLL11Q8NHH1 800 aa13.28□□□□□ -0.28
CUX1-212ENST00000547394 TEX13AQ9BXU3 409 aaPredicted RBP13.28□□□□□ -0.28
CUX1-212ENST00000547394 ZSWIM6Q9HCJ5 1215 aa13.28□□□□□ -0.28
CUX1-212ENST00000547394 NUP188Q5SRE5 1749 aa13.28□□□□□ -0.28
CUX1-212ENST00000547394 PLEKHG2Q9H7P9 1386 aa13.28□□□□□ -0.28
CUX1-212ENST00000547394 VSIG10Q8N0Z9 540 aa13.28□□□□□ -0.28
CUX1-212ENST00000547394 CNNM1Q9NRU3 951 aa13.28□□□□□ -0.28
CUX1-212ENST00000547394 PAPPAQ13219 1627 aa13.27□□□□□ -0.28
CUX1-212ENST00000547394 FSD2A1L4K1 749 aa13.27□□□□□ -0.28
CUX1-212ENST00000547394 HIP1O00291 1037 aa13.27□□□□□ -0.28
CUX1-212ENST00000547394 GADD45BO75293 160 aaPredicted RBP13.27□□□□□ -0.28
CUX1-212ENST00000547394 FOSBP53539 338 aa13.27□□□□□ -0.28
CUX1-212ENST00000547394 KBTBD3Q8NAB2 608 aa13.27□□□□□ -0.28
CUX1-212ENST00000547394 SMC3Q9UQE7 1217 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms