RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 JDP2Q8WYK2 163 aa11.07□□□□□ -0.64
USP28-215ENST00000545608 DDX21Q9NR30 783 aaKnown RBP eCLIP11.07□□□□□ -0.64
USP28-215ENST00000545608 RNF123Q5XPI4 1314 aa11.07□□□□□ -0.64
USP28-215ENST00000545608 PASKQ96RG2 1323 aa11.07□□□□□ -0.64
USP28-215ENST00000545608 PITPNM1O00562 1244 aa11.06□□□□□ -0.64
USP28-215ENST00000545608 ITGBL1O95965 494 aaPredicted RBP11.06□□□□□ -0.64
USP28-215ENST00000545608 HSPA1AP0DMV8 641 aaKnown RBP11.06□□□□□ -0.64
USP28-215ENST00000545608 HSPA1BP0DMV9 641 aaKnown RBP11.06□□□□□ -0.64
USP28-215ENST00000545608 HCLS1P14317 486 aaPredicted RBP11.06□□□□□ -0.64
USP28-215ENST00000545608 TCIRG1Q13488 830 aa11.06□□□□□ -0.64
USP28-215ENST00000545608 WDR43Q15061 677 aaKnown RBP eCLIP11.06□□□□□ -0.64
USP28-215ENST00000545608 NLRP10Q86W26 655 aa11.06□□□□□ -0.64
USP28-215ENST00000545608 GPC2Q8N158 579 aa11.06□□□□□ -0.64
USP28-215ENST00000545608 LARGE2Q8N3Y3 721 aa11.06□□□□□ -0.64
USP28-215ENST00000545608 ZNF428Q96B54 188 aa11.06□□□□□ -0.64
USP28-215ENST00000545608 MKRN1Q9UHC7 482 aaKnown RBP11.06□□□□□ -0.64
USP28-215ENST00000545608 COL4A5P29400 1685 aa11.05□□□□□ -0.64
USP28-215ENST00000545608 EIF6P56537 245 aaKnown RBP11.05□□□□□ -0.64
USP28-215ENST00000545608 GRIPAP1Q4V328 841 aa11.05□□□□□ -0.64
USP28-215ENST00000545608 HSP90AB3PQ58FF7 597 aa11.05□□□□□ -0.64
USP28-215ENST00000545608 RYDENQ9NUL5 291 aaKnown RBP11.05□□□□□ -0.64
USP28-215ENST00000545608 CHPF2Q9P2E5 772 aa11.05□□□□□ -0.64
USP28-215ENST00000545608 ATP6V0A2Q9Y487 856 aa11.05□□□□□ -0.64
USP28-215ENST00000545608 GJA3Q9Y6H8 435 aa11.05□□□□□ -0.64
USP28-215ENST00000545608 MAP1SQ66K74 1059 aaPredicted RBP11.04□□□□□ -0.64
USP28-215ENST00000545608 PNMA8AQ86V59 439 aaPredicted RBP11.04□□□□□ -0.64
USP28-215ENST00000545608 CNTROBQ8N137 903 aa11.04□□□□□ -0.64
USP28-215ENST00000545608 PRKRIP1Q9H875 184 aaPredicted RBP11.04□□□□□ -0.64
USP28-215ENST00000545608 TRMT112Q9UI30 125 aaKnown RBP11.04□□□□□ -0.64
USP28-215ENST00000545608 ABCC4O15439 1325 aa11.04□□□□□ -0.64
USP28-215ENST00000545608 PPIP5K2O43314 1243 aa11.03□□□□□ -0.64
USP28-215ENST00000545608 GTPBP6O43824 516 aaPredicted RBP11.03□□□□□ -0.64
USP28-215ENST00000545608 BBOX1O75936 387 aa11.03□□□□□ -0.64
USP28-215ENST00000545608 EPS15P42566 896 aa11.03□□□□□ -0.64
USP28-215ENST00000545608 SCNN1DP51172 638 aa11.03□□□□□ -0.64
USP28-215ENST00000545608 NBR1Q14596 966 aa11.03□□□□□ -0.64
USP28-215ENST00000545608 AOC3Q16853 763 aa11.03□□□□□ -0.64
USP28-215ENST00000545608 HDGFL1Q5TGJ6 251 aa11.03□□□□□ -0.64
USP28-215ENST00000545608 DUSP27Q5VZP5 1158 aa11.03□□□□□ -0.64
USP28-215ENST00000545608 SH3TC1Q8TE82 1336 aa11.03□□□□□ -0.64
USP28-215ENST00000545608 SCN4AP35499 1836 aa11.02□□□□□ -0.64
USP28-215ENST00000545608 TMEM88BA6NKF7 163 aa11.02□□□□□ -0.65
USP28-215ENST00000545608 APAF1O14727 1248 aa11.02□□□□□ -0.65
USP28-215ENST00000545608 HOXB7P09629 217 aa11.02□□□□□ -0.65
USP28-215ENST00000545608 TPRNQ4KMQ1 711 aa11.02□□□□□ -0.65
USP28-215ENST00000545608 ANKRD13DQ6ZTN6 518 aa11.02□□□□□ -0.65
USP28-215ENST00000545608 SP8Q8IXZ3 490 aa11.02□□□□□ -0.65
USP28-215ENST00000545608 NIM1KQ8IY84 436 aa11.02□□□□□ -0.65
USP28-215ENST00000545608 PLBD2Q8NHP8 589 aa11.02□□□□□ -0.65
USP28-215ENST00000545608 ISCA1Q9BUE6 129 aa11.02□□□□□ -0.65
USP28-215ENST00000545608 RTFDC1Q9BY42 306 aaPredicted RBP11.02□□□□□ -0.65
USP28-215ENST00000545608 TMX4Q9H1E5 349 aaPredicted RBP11.02□□□□□ -0.65
USP28-215ENST00000545608 MBIPQ9NS73 344 aa11.02□□□□□ -0.65
USP28-215ENST00000545608 STK24Q9Y6E0 443 aa11.02□□□□□ -0.65
USP28-215ENST00000545608 CNTNAP1P78357 1384 aa11.02□□□□□ -0.65
USP28-215ENST00000545608 ATP5J2-PTCD1G3V325 749 aa11.01□□□□□ -0.65
USP28-215ENST00000545608 ZNF853P0CG23 659 aa11.01□□□□□ -0.65
USP28-215ENST00000545608 PYGBP11216 843 aa11.01□□□□□ -0.65
USP28-215ENST00000545608 LMOD1P29536 600 aaPredicted RBP11.01□□□□□ -0.65
USP28-215ENST00000545608 VEGFBP49765 207 aa11.01□□□□□ -0.65
USP28-215ENST00000545608 FMR1Q06787 632 aaKnown RBP eCLIP11.01□□□□□ -0.65
USP28-215ENST00000545608 GRAPQ13588 217 aa11.01□□□□□ -0.65
USP28-215ENST00000545608 DDX46Q7L014 1031 aaKnown RBP11.01□□□□□ -0.65
USP28-215ENST00000545608 MPNDQ8N594 471 aa11.01□□□□□ -0.65
USP28-215ENST00000545608 GRAPLQ8TC17 118 aaPredicted RBP11.01□□□□□ -0.65
USP28-215ENST00000545608 VPS33BQ9H267 617 aa11.01□□□□□ -0.65
USP28-215ENST00000545608 DBF4Q9UBU7 674 aaPredicted RBP11.01□□□□□ -0.65
USP28-215ENST00000545608 CXCL9Q07325 125 aa11□□□□□ -0.65
USP28-215ENST00000545608 DPP8Q6V1X1 898 aaPredicted RBP11□□□□□ -0.65
USP28-215ENST00000545608 TNS4Q8IZW8 715 aa11□□□□□ -0.65
USP28-215ENST00000545608 SUPT20HQ8NEM7 779 aa11□□□□□ -0.65
USP28-215ENST00000545608 FAM89AQ96GI7 184 aa11□□□□□ -0.65
USP28-215ENST00000545608 HYPKQ9NX55 129 aa11□□□□□ -0.65
USP28-215ENST00000545608 ZNRF3Q9ULT6 936 aa11□□□□□ -0.65
USP28-215ENST00000545608 ADAMTSL1Q8N6G6 1762 aa11□□□□□ -0.65
USP28-215ENST00000545608 LTBP1Q14766 1721 aa10.99□□□□□ -0.65
USP28-215ENST00000545608 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.99□□□□□ -0.65
USP28-215ENST00000545608 ELL2O00472 640 aaPredicted RBP10.99□□□□□ -0.65
USP28-215ENST00000545608 KIAA2012Q0VF49 1180 aa10.99□□□□□ -0.65
USP28-215ENST00000545608 SF3B3Q15393 1217 aaKnown RBP10.99□□□□□ -0.65
USP28-215ENST00000545608 RTL5Q5HYW3 569 aaPredicted RBP10.99□□□□□ -0.65
USP28-215ENST00000545608 ZFP91Q96JP5 570 aaPredicted RBP10.99□□□□□ -0.65
USP28-215ENST00000545608 PHAXQ9H814 394 aaKnown RBP10.99□□□□□ -0.65
USP28-215ENST00000545608 RASSF10A6NK89 507 aa10.98□□□□□ -0.65
USP28-215ENST00000545608 FOXN1O15353 648 aa10.98□□□□□ -0.65
USP28-215ENST00000545608 TRIM28Q13263 835 aaKnown RBP10.98□□□□□ -0.65
USP28-215ENST00000545608 DEFB115Q30KQ5 88 aa10.98□□□□□ -0.65
USP28-215ENST00000545608 CIAPIN1Q6FI81 312 aa10.98□□□□□ -0.65
USP28-215ENST00000545608 USP50Q70EL3 339 aaPredicted RBP10.98□□□□□ -0.65
USP28-215ENST00000545608 CELF1Q92879 486 aaKnown RBP10.98□□□□□ -0.65
USP28-215ENST00000545608 IFT57Q9NWB7 429 aa10.98□□□□□ -0.65
USP28-215ENST00000545608 GPRC5DQ9NZD1 345 aa10.98□□□□□ -0.65
USP28-215ENST00000545608 YDJCA8MPS7 323 aa10.97□□□□□ -0.65
USP28-215ENST00000545608 TRAF5O00463 557 aa10.97□□□□□ -0.65
USP28-215ENST00000545608 IRS4O14654 1257 aaPredicted RBP10.97□□□□□ -0.65
USP28-215ENST00000545608 RAD17O75943 681 aa10.97□□□□□ -0.65
USP28-215ENST00000545608 GMPSP49915 693 aaPredicted RBP10.97□□□□□ -0.65
USP28-215ENST00000545608 GNAI1P63096 354 aa10.97□□□□□ -0.65
USP28-215ENST00000545608 CCDC184Q52MB2 194 aa10.97□□□□□ -0.65
USP28-215ENST00000545608 RIC3Q7Z5B4 369 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms