RNA–Protein interactions for RNA: ENST00000544429.5

DDX55-211, Transcript of DEAD-box helicase 55, humanhuman

TSL 4

Gene DDX55, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-211ENST00000544429 SOGA3Q5TF21 947 aa24.25■■□□□ 1.47
DDX55-211ENST00000544429 LTBP3Q9NS15 1303 aa24.25■■□□□ 1.47
DDX55-211ENST00000544429 API5Q9BZZ5 524 aaKnown RBP24.24■■□□□ 1.47
DDX55-211ENST00000544429 RTL9Q8NET4 1388 aa24.24■■□□□ 1.47
DDX55-211ENST00000544429 DICER1Q9UPY3 1922 aaKnown RBP24.23■■□□□ 1.47
DDX55-211ENST00000544429 BBOX1O75936 387 aa24.23■■□□□ 1.47
DDX55-211ENST00000544429 PRELPP51888 382 aa24.23■■□□□ 1.47
DDX55-211ENST00000544429 CTSWP56202 376 aa24.23■■□□□ 1.47
DDX55-211ENST00000544429 GRAPQ13588 217 aa24.23■■□□□ 1.47
DDX55-211ENST00000544429 DDX46Q7L014 1031 aaKnown RBP24.23■■□□□ 1.47
DDX55-211ENST00000544429 TTLL11Q8NHH1 800 aa24.23■■□□□ 1.47
DDX55-211ENST00000544429 GRAPLQ8TC17 118 aaPredicted RBP24.23■■□□□ 1.47
DDX55-211ENST00000544429 CC2D2BQ6DHV5 1058 aa24.22■■□□□ 1.47
DDX55-211ENST00000544429 OLFM4Q6UX06 510 aa24.22■■□□□ 1.47
DDX55-211ENST00000544429 PPEF1O14829 653 aaPredicted RBP24.21■■□□□ 1.47
DDX55-211ENST00000544429 CSF1RP07333 972 aa24.21■■□□□ 1.47
DDX55-211ENST00000544429 CCDC152Q4G0S7 254 aa24.21■■□□□ 1.47
DDX55-211ENST00000544429 CCDC93Q567U6 631 aa24.21■■□□□ 1.47
DDX55-211ENST00000544429 SLC51AQ86UW1 340 aa24.21■■□□□ 1.47
DDX55-211ENST00000544429 ZNF219Q9P2Y4 722 aaPredicted RBP24.21■■□□□ 1.47
DDX55-211ENST00000544429 ATP6V0A2Q9Y487 856 aa24.21■■□□□ 1.47
DDX55-211ENST00000544429 TRIM27P14373 513 aa24.2■■□□□ 1.46
DDX55-211ENST00000544429 FOXO4P98177 505 aa24.2■■□□□ 1.46
DDX55-211ENST00000544429 RASSF7Q02833 373 aa24.2■■□□□ 1.46
DDX55-211ENST00000544429 CELF1Q92879 486 aaKnown RBP24.2■■□□□ 1.46
DDX55-211ENST00000544429 LTBP1Q14766 1721 aa24.2■■□□□ 1.46
DDX55-211ENST00000544429 IPO8O15397 1037 aaKnown RBP24.19■■□□□ 1.46
DDX55-211ENST00000544429 NBPF7P0C2Y1 421 aaPredicted RBP24.19■■□□□ 1.46
DDX55-211ENST00000544429 CCT4P50991 539 aaKnown RBP24.19■■□□□ 1.46
DDX55-211ENST00000544429 GRIPAP1Q4V328 841 aa24.19■■□□□ 1.46
DDX55-211ENST00000544429 ATF7IPQ6VMQ6 1270 aa24.19■■□□□ 1.46
DDX55-211ENST00000544429 TMC4Q7Z404 712 aa24.19■■□□□ 1.46
DDX55-211ENST00000544429 RTKN2Q8IZC4 609 aa24.19■■□□□ 1.46
DDX55-211ENST00000544429 KAZALD1Q96I82 304 aa24.19■■□□□ 1.46
DDX55-211ENST00000544429 USP44Q9H0E7 712 aa24.19■■□□□ 1.46
DDX55-211ENST00000544429 INTS3Q68E01 1043 aaKnown RBP24.18■■□□□ 1.46
DDX55-211ENST00000544429 SP8Q8IXZ3 490 aa24.18■■□□□ 1.46
DDX55-211ENST00000544429 SEC31BQ9NQW1 1179 aa24.18■■□□□ 1.46
DDX55-211ENST00000544429 C9orf78Q9NZ63 289 aaPredicted RBP24.18■■□□□ 1.46
DDX55-211ENST00000544429 YY1P25490 414 aa24.17■■□□□ 1.46
DDX55-211ENST00000544429 PSMD1Q99460 953 aa24.17■■□□□ 1.46
DDX55-211ENST00000544429 TAOK3Q9H2K8 898 aa24.17■■□□□ 1.46
DDX55-211ENST00000544429 GREM2Q9H772 168 aa24.17■■□□□ 1.46
DDX55-211ENST00000544429 LMNB1P20700 586 aa24.16■■□□□ 1.46
DDX55-211ENST00000544429 RPS8P62241 208 aaKnown RBP24.16■■□□□ 1.46
DDX55-211ENST00000544429 FKBP4Q02790 459 aaKnown RBP eCLIP24.16■■□□□ 1.46
DDX55-211ENST00000544429 EPHA10Q5JZY3 1008 aa24.16■■□□□ 1.46
DDX55-211ENST00000544429 TNNQ9UQP3 1299 aa24.16■■□□□ 1.46
DDX55-211ENST00000544429 DUOX1Q9NRD9 1551 aa24.16■■□□□ 1.46
DDX55-211ENST00000544429 TIAM2Q8IVF5 1701 aa24.15■■□□□ 1.46
DDX55-211ENST00000544429 C9orf131Q5VYM1 1079 aa24.15■■□□□ 1.46
DDX55-211ENST00000544429 SPEF2Q9C093 1822 aa24.14■■□□□ 1.46
DDX55-211ENST00000544429 ZKSCAN2Q63HK3 967 aa24.14■■□□□ 1.45
DDX55-211ENST00000544429 FRAT1Q92837 279 aaPredicted RBP24.14■■□□□ 1.45
DDX55-211ENST00000544429 SUCLG2Q96I99 432 aa24.14■■□□□ 1.45
DDX55-211ENST00000544429 RABL6Q3YEC7 729 aaPredicted RBP24.13■■□□□ 1.45
DDX55-211ENST00000544429 CCDC85AQ96PX6 553 aaPredicted RBP24.13■■□□□ 1.45
DDX55-211ENST00000544429 RTFDC1Q9BY42 306 aaPredicted RBP24.13■■□□□ 1.45
DDX55-211ENST00000544429 ZC3H4Q9UPT8 1303 aaKnown RBP24.12■■□□□ 1.45
DDX55-211ENST00000544429 FAM161AQ3B820 660 aa24.12■■□□□ 1.45
DDX55-211ENST00000544429 RNF181Q9P0P0 153 aa24.12■■□□□ 1.45
DDX55-211ENST00000544429 CDC5LQ99459 802 aaKnown RBP24.11■■□□□ 1.45
DDX55-211ENST00000544429 RCAN3Q9UKA8 241 aa24.11■■□□□ 1.45
DDX55-211ENST00000544429 ITGA6P23229 1130 aa24.1■■□□□ 1.45
DDX55-211ENST00000544429 LMBR1LQ6UX01 489 aa24.1■■□□□ 1.45
DDX55-211ENST00000544429 COL4A5P29400 1685 aa24.09■■□□□ 1.45
DDX55-211ENST00000544429 ANKRD18AQ8IVF6 992 aa24.09■■□□□ 1.45
DDX55-211ENST00000544429 ANKRD44Q8N8A2 993 aa24.09■■□□□ 1.45
DDX55-211ENST00000544429 YTHDC1Q96MU7 727 aaKnown RBP24.09■■□□□ 1.45
DDX55-211ENST00000544429 BICC1Q9H694 974 aaKnown RBP24.09■■□□□ 1.45
DDX55-211ENST00000544429 BSDC1Q9NW68 430 aaPredicted RBP24.09■■□□□ 1.45
DDX55-211ENST00000544429 A0A1B0GUL6 1792 aa24.08■■□□□ 1.45
DDX55-211ENST00000544429 CLUAP1Q96AJ1 413 aa24.08■■□□□ 1.45
DDX55-211ENST00000544429 ZNF277Q9NRM2 450 aaPredicted RBP24.08■■□□□ 1.45
DDX55-211ENST00000544429 PODXL2Q9NZ53 605 aa24.08■■□□□ 1.45
DDX55-211ENST00000544429 RLBP1P12271 317 aa24.07■■□□□ 1.44
DDX55-211ENST00000544429 IARSP41252 1262 aaKnown RBP24.07■■□□□ 1.44
DDX55-211ENST00000544429 MPNDQ8N594 471 aa24.07■■□□□ 1.44
DDX55-211ENST00000544429 MEIS3Q99687 375 aa24.07■■□□□ 1.44
DDX55-211ENST00000544429 TMX4Q9H1E5 349 aaPredicted RBP24.07■■□□□ 1.44
DDX55-211ENST00000544429 VPS33BQ9H267 617 aa24.07■■□□□ 1.44
DDX55-211ENST00000544429 DPP8Q6V1X1 898 aaPredicted RBP24.06■■□□□ 1.44
DDX55-211ENST00000544429 TMEM57Q8N5G2 664 aa24.06■■□□□ 1.44
DDX55-211ENST00000544429 ZNF784Q8NCA9 323 aaPredicted RBP24.06■■□□□ 1.44
DDX55-211ENST00000544429 ANKRD18BA2A2Z9 1011 aa24.05■■□□□ 1.44
DDX55-211ENST00000544429 GPSM2P81274 684 aa24.05■■□□□ 1.44
DDX55-211ENST00000544429 IFIT5Q13325 482 aaKnown RBP24.05■■□□□ 1.44
DDX55-211ENST00000544429 UBTFL1P0CB47 393 aaPredicted RBP24.04■■□□□ 1.44
DDX55-211ENST00000544429 DZIP1LQ8IYY4 767 aaKnown RBP24.04■■□□□ 1.44
DDX55-211ENST00000544429 MINPP1Q9UNW1 487 aa24.04■■□□□ 1.44
DDX55-211ENST00000544429 SUPT20HQ8NEM7 779 aa24.03■■□□□ 1.44
DDX55-211ENST00000544429 POLLQ9UGP5 575 aa24.03■■□□□ 1.44
DDX55-211ENST00000544429 NSFL1CQ9UNZ2 370 aaKnown RBP24.03■■□□□ 1.44
DDX55-211ENST00000544429 GNAI3P08754 354 aa24.02■■□□□ 1.44
DDX55-211ENST00000544429 IGHMBP2P38935 993 aaKnown RBP24.02■■□□□ 1.44
DDX55-211ENST00000544429 CCDC57Q2TAC2 916 aa24.02■■□□□ 1.44
DDX55-211ENST00000544429 KIAA2012Q0VF49 1180 aa24.01■■□□□ 1.43
DDX55-211ENST00000544429 TBC1D16Q8TBP0 767 aa24.01■■□□□ 1.43
DDX55-211ENST00000544429 XDHP47989 1333 aa24.01■■□□□ 1.43
DDX55-211ENST00000544429 FZD9O00144 591 aa24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms