RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 SETBP1Q9Y6X0 1596 aa15.14■□□□□ 0.01
MSH6-210ENST00000540021 TMCO3Q6UWJ1 677 aa15.13■□□□□ 0.01
MSH6-210ENST00000540021 ZSWIM6Q9HCJ5 1215 aa15.13■□□□□ 0.01
MSH6-210ENST00000540021 YEATS2Q9ULM3 1422 aa15.13■□□□□ 0.01
MSH6-210ENST00000540021 ADGRB1O14514 1584 aa15.13■□□□□ 0.01
MSH6-210ENST00000540021 CPLX2Q6PUV4 134 aaKnown RBP15.13■□□□□ 0.01
MSH6-210ENST00000540021 AOX1Q06278 1338 aa15.13■□□□□ 0.01
MSH6-210ENST00000540021 EAF2Q96CJ1 260 aaPredicted RBP15.12■□□□□ 0.01
MSH6-210ENST00000540021 IFNKQ9P0W0 207 aa15.12■□□□□ 0.01
MSH6-210ENST00000540021 MAP3K5Q99683 1374 aa15.12■□□□□ 0.01
MSH6-210ENST00000540021 RPAP1Q9BWH6 1393 aaPredicted RBP15.12■□□□□ 0.01
MSH6-210ENST00000540021 KIF20AO95235 890 aa15.12■□□□□ 0.01
MSH6-210ENST00000540021 SLU7O95391 586 aaKnown RBP15.12■□□□□ 0.01
MSH6-210ENST00000540021 PDIA4P13667 645 aaKnown RBP15.12■□□□□ 0.01
MSH6-210ENST00000540021 C8orf76Q96K31 380 aa15.12■□□□□ 0.01
MSH6-210ENST00000540021 TLR7Q9NYK1 1049 aaKnown RBP15.12■□□□□ 0.01
MSH6-210ENST00000540021 MROH2AA6NES4 1674 aa15.12■□□□□ 0.01
MSH6-210ENST00000540021 KIAA1210Q9ULL0 1709 aa15.12■□□□□ 0.01
MSH6-210ENST00000540021 CTAGE5O15320 804 aa15.12■□□□□ 0.01
MSH6-210ENST00000540021 SLC3A2P08195 630 aaKnown RBP15.12■□□□□ 0.01
MSH6-210ENST00000540021 HOXC9P31274 260 aa15.12■□□□□ 0.01
MSH6-210ENST00000540021 SEC62Q99442 399 aaKnown RBP15.12■□□□□ 0.01
MSH6-210ENST00000540021 GPS2Q13227 327 aa15.11■□□□□ 0.01
MSH6-210ENST00000540021 COL3A1P02461 1466 aaPredicted RBP15.11■□□□□ 0.01
MSH6-210ENST00000540021 AATKQ6ZMQ8 1374 aa15.11■□□□□ 0.01
MSH6-210ENST00000540021 PTPDC1A2A3K4 754 aa15.11■□□□□ 0.01
MSH6-210ENST00000540021 AP5Z1O43299 807 aa15.11■□□□□ 0.01
MSH6-210ENST00000540021 MARCKSP29966 332 aaPredicted RBP15.11■□□□□ 0.01
MSH6-210ENST00000540021 ZC3H6P61129 1189 aaKnown RBP15.11■□□□□ 0.01
MSH6-210ENST00000540021 ZNF397Q8NF99 534 aaPredicted RBP15.11■□□□□ 0.01
MSH6-210ENST00000540021 NOL10Q9BSC4 688 aaKnown RBP15.11■□□□□ 0.01
MSH6-210ENST00000540021 ZSCAN16Q9H4T2 348 aaPredicted RBP15.11■□□□□ 0.01
MSH6-210ENST00000540021 U3KPZ7 1027 aaPredicted RBP15.11■□□□□ 0.01
MSH6-210ENST00000540021 NEMFO60524 1076 aa15.11■□□□□ 0.01
MSH6-210ENST00000540021 KSR2Q6VAB6 950 aa15.11■□□□□ 0.01
MSH6-210ENST00000540021 TTC14Q96N46 770 aa15.11■□□□□ 0.01
MSH6-210ENST00000540021 ARHGAP29Q52LW3 1261 aa15.1■□□□□ 0.01
MSH6-210ENST00000540021 CCDC144CPQ8IYA2 1237 aa15.1■□□□□ 0.01
MSH6-210ENST00000540021 TMEM87AQ8NBN3 555 aa15.1■□□□□ 0.01
MSH6-210ENST00000540021 SUCLG2Q96I99 432 aa15.1■□□□□ 0.01
MSH6-210ENST00000540021 HMG20BQ9P0W2 317 aa15.1■□□□□ 0.01
MSH6-210ENST00000540021 ADGRB2O60241 1585 aa15.1■□□□□ 0.01
MSH6-210ENST00000540021 A0A087WZG4 1122 aa15.1■□□□□ 0.01
MSH6-210ENST00000540021 NCBP1Q09161 790 aaKnown RBP15.1■□□□□ 0.01
MSH6-210ENST00000540021 CCDC82Q8N4S0 544 aa15.1■□□□□ 0.01
MSH6-210ENST00000540021 CDK12Q9NYV4 1490 aaPredicted RBP15.1■□□□□ 0.01
MSH6-210ENST00000540021 ZSCAN20P17040 1043 aaPredicted RBP15.1■□□□□ 0.01
MSH6-210ENST00000540021 HSP90AB3PQ58FF7 597 aa15.1■□□□□ 0.01
MSH6-210ENST00000540021 NRXN1Q9ULB1 1477 aa15.09■□□□□ 0.01
MSH6-210ENST00000540021 C11orf57Q6ZUT1 292 aaPredicted RBP15.09■□□□□ 0.01
MSH6-210ENST00000540021 GSDMDP57764 484 aa15.09■□□□□ 0.01
MSH6-210ENST00000540021 BEND3Q5T5X7 828 aa15.09■□□□□ 0.01
MSH6-210ENST00000540021 SPTLC3Q9NUV7 552 aa15.09■□□□□ 0.01
MSH6-210ENST00000540021 ARHGEF40Q8TER5 1519 aa15.09■□□□□ 0.01
MSH6-210ENST00000540021 CAMSAP1Q5T5Y3 1602 aa15.09■□□□□ 0.01
MSH6-210ENST00000540021 GOLGA8BA8MQT2 603 aa15.09■□□□□ 0.01
MSH6-210ENST00000540021 VGLL3A8MV65 326 aa15.09■□□□□ 0.01
MSH6-210ENST00000540021 RRP12Q5JTH9 1297 aaKnown RBP15.09■□□□□ 0.01
MSH6-210ENST00000540021 COPS6Q7L5N1 327 aa15.09■□□□□ 0.01
MSH6-210ENST00000540021 ZNF589Q86UQ0 364 aaPredicted RBP15.09■□□□□ 0.01
MSH6-210ENST00000540021 MRPS27Q92552 414 aaKnown RBP15.09■□□□□ 0.01
MSH6-210ENST00000540021 PRDM4Q9UKN5 801 aa15.09■□□□□ 0.01
MSH6-210ENST00000540021 CPSF1Q10570 1443 aaKnown RBP15.08■□□□□ 0.01
MSH6-210ENST00000540021 UHRF1BP1LA0JNW5 1464 aa15.08■□□□□ 0.01
MSH6-210ENST00000540021 TFCP2Q12800 502 aa15.08■□□□□ 0.01
MSH6-210ENST00000540021 ERCC6LQ2NKX8 1250 aa15.08■□□□□ 0.01
MSH6-210ENST00000540021 PROSER3Q2NL68 480 aa15.08■□□□□ 0.01
MSH6-210ENST00000540021 XAGE3Q8WTP9 111 aa15.08■□□□□ 0.01
MSH6-210ENST00000540021 CHMP4CQ96CF2 233 aa15.08■□□□□ 0.01
MSH6-210ENST00000540021 TM6SF1Q9BZW5 370 aa15.08■□□□□ 0.01
MSH6-210ENST00000540021 PTPN21Q16825 1174 aa15.08■□□□□ 0
MSH6-210ENST00000540021 ORC3Q9UBD5 711 aaPredicted RBP15.08■□□□□ 0
MSH6-210ENST00000540021 KIF2AO00139 706 aaPredicted RBP15.08■□□□□ 0
MSH6-210ENST00000540021 DHX16O60231 1041 aaKnown RBP15.08■□□□□ 0
MSH6-210ENST00000540021 TOP1P11387 765 aaKnown RBP15.08■□□□□ 0
MSH6-210ENST00000540021 BMS1Q14692 1282 aaKnown RBP15.08■□□□□ 0
MSH6-210ENST00000540021 CCDC144BQ3MJ40 725 aa15.08■□□□□ 0
MSH6-210ENST00000540021 LRRC8AQ8IWT6 810 aa15.08■□□□□ 0
MSH6-210ENST00000540021 CPLX3Q8WVH0 158 aa15.08■□□□□ 0
MSH6-210ENST00000540021 ATP7BP35670 1465 aa15.07■□□□□ 0
MSH6-210ENST00000540021 CAVIN2O95810 425 aa15.07■□□□□ 0
MSH6-210ENST00000540021 GOLGA6L1Q8N7Z2 621 aa15.07■□□□□ 0
MSH6-210ENST00000540021 RASSF8Q8NHQ8 419 aa15.07■□□□□ 0
MSH6-210ENST00000540021 PRAMEF22A3QJZ6 481 aa15.07■□□□□ 0
MSH6-210ENST00000540021 IFIT1P09914 478 aaKnown RBP15.07■□□□□ 0
MSH6-210ENST00000540021 EIF4A1P60842 406 aaKnown RBP15.07■□□□□ 0
MSH6-210ENST00000540021 USP28Q96RU2 1077 aa15.07■□□□□ 0
MSH6-210ENST00000540021 MCMDC2Q4G0Z9 681 aa15.07■□□□□ 0
MSH6-210ENST00000540021 LINS1Q8NG48 757 aa15.07■□□□□ 0
MSH6-210ENST00000540021 USP27XA6NNY8 438 aa15.06■□□□□ 0
MSH6-210ENST00000540021 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.06■□□□□ 0
MSH6-210ENST00000540021 CCDC34Q96HJ3 373 aa15.06■□□□□ 0
MSH6-210ENST00000540021 DBNDD2Q9BQY9 259 aa15.06■□□□□ 0
MSH6-210ENST00000540021 GNG11P61952 73 aa15.06■□□□□ 0
MSH6-210ENST00000540021 TTC39AQ5SRH9 613 aa15.06■□□□□ 0
MSH6-210ENST00000540021 UTP14CQ5TAP6 766 aaKnown RBP15.06■□□□□ 0
MSH6-210ENST00000540021 PTPRMP28827 1452 aa15.06■□□□□ 0
MSH6-210ENST00000540021 ALDH1L1O75891 902 aa15.06■□□□□ 0
MSH6-210ENST00000540021 KLHL10Q6JEL2 608 aa15.06■□□□□ 0
MSH6-210ENST00000540021 SBNO1A3KN83 1393 aa15.05■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 522.4 ms