RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 KIAA2012Q0VF49 1180 aa15.4■□□□□ 0.06
CLSTN3-209ENST00000539982 NOGQ13253 232 aa15.4■□□□□ 0.06
CLSTN3-209ENST00000539982 MPNDQ8N594 471 aa15.4■□□□□ 0.06
CLSTN3-209ENST00000539982 UTP14AQ9BVJ6 771 aaKnown RBP15.4■□□□□ 0.06
CLSTN3-209ENST00000539982 ABCC4O15439 1325 aa15.4■□□□□ 0.06
CLSTN3-209ENST00000539982 ERBB4Q15303 1308 aa15.4■□□□□ 0.06
CLSTN3-209ENST00000539982 RAD17O75943 681 aa15.39■□□□□ 0.05
CLSTN3-209ENST00000539982 NEFMP07197 916 aa15.39■□□□□ 0.05
CLSTN3-209ENST00000539982 CNOT7Q9UIV1 285 aaKnown RBP15.39■□□□□ 0.05
CLSTN3-209ENST00000539982 H7C1D1 291 aa15.38■□□□□ 0.05
CLSTN3-209ENST00000539982 KDM3BQ7LBC6 1761 aa15.37■□□□□ 0.05
CLSTN3-209ENST00000539982 HUNKP57058 714 aa15.37■□□□□ 0.05
CLSTN3-209ENST00000539982 USP48Q86UV5 1035 aa15.37■□□□□ 0.05
CLSTN3-209ENST00000539982 TRPM4Q8TD43 1214 aa15.37■□□□□ 0.05
CLSTN3-209ENST00000539982 ZIC5Q96T25 663 aa15.37■□□□□ 0.05
CLSTN3-209ENST00000539982 PDIA6Q15084 440 aa15.36■□□□□ 0.05
CLSTN3-209ENST00000539982 LRP10Q7Z4F1 713 aa15.36■□□□□ 0.05
CLSTN3-209ENST00000539982 TNRC18O15417 2968 aaPredicted RBP15.35■□□□□ 0.05
CLSTN3-209ENST00000539982 YDJCA8MPS7 323 aa15.35■□□□□ 0.05
CLSTN3-209ENST00000539982 DDX46Q7L014 1031 aaKnown RBP15.35■□□□□ 0.05
CLSTN3-209ENST00000539982 DPF2Q92785 391 aa15.35■□□□□ 0.05
CLSTN3-209ENST00000539982 THUMPD2Q9BTF0 503 aaKnown RBP15.35■□□□□ 0.05
CLSTN3-209ENST00000539982 SHTN1A0MZ66 631 aa15.34■□□□□ 0.05
CLSTN3-209ENST00000539982 HCLS1P14317 486 aaPredicted RBP15.34■□□□□ 0.05
CLSTN3-209ENST00000539982 GRAPQ13588 217 aa15.34■□□□□ 0.05
CLSTN3-209ENST00000539982 NFE2L2Q16236 605 aa15.34■□□□□ 0.05
CLSTN3-209ENST00000539982 RGMBQ6NW40 437 aa15.34■□□□□ 0.05
CLSTN3-209ENST00000539982 MICALL2Q8IY33 904 aa15.34■□□□□ 0.05
CLSTN3-209ENST00000539982 GRAPLQ8TC17 118 aaPredicted RBP15.34■□□□□ 0.05
CLSTN3-209ENST00000539982 CCDC102AQ96A19 550 aa15.34■□□□□ 0.05
CLSTN3-209ENST00000539982 PLEKHF1Q96S99 279 aa15.34■□□□□ 0.05
CLSTN3-209ENST00000539982 DLG5Q8TDM6 1919 aa15.33■□□□□ 0.05
CLSTN3-209ENST00000539982 FAM155AB1AL88 458 aaPredicted RBP15.33■□□□□ 0.04
CLSTN3-209ENST00000539982 EIF2S2P20042 333 aaKnown RBP15.33■□□□□ 0.04
CLSTN3-209ENST00000539982 HSP90AB3PQ58FF7 597 aa15.33■□□□□ 0.04
CLSTN3-209ENST00000539982 DLK2Q6UY11 383 aa15.33■□□□□ 0.04
CLSTN3-209ENST00000539982 TMC4Q7Z404 712 aa15.33■□□□□ 0.04
CLSTN3-209ENST00000539982 NLRP10Q86W26 655 aa15.33■□□□□ 0.04
CLSTN3-209ENST00000539982 SAGE1Q9NXZ1 904 aa15.33■□□□□ 0.04
CLSTN3-209ENST00000539982 ZBTB12Q9Y330 459 aaPredicted RBP15.33■□□□□ 0.04
CLSTN3-209ENST00000539982 KIF23Q02241 960 aaPredicted RBP15.32■□□□□ 0.04
CLSTN3-209ENST00000539982 WASHC4Q2M389 1173 aa15.32■□□□□ 0.04
CLSTN3-209ENST00000539982 SAMD7Q7Z3H4 446 aa15.32■□□□□ 0.04
CLSTN3-209ENST00000539982 KRT26Q7Z3Y9 468 aa15.32■□□□□ 0.04
CLSTN3-209ENST00000539982 C2orf69Q8N8R5 385 aa15.32■□□□□ 0.04
CLSTN3-209ENST00000539982 GBA2Q9HCG7 927 aaPredicted RBP15.32■□□□□ 0.04
CLSTN3-209ENST00000539982 TCIRG1Q13488 830 aa15.31■□□□□ 0.04
CLSTN3-209ENST00000539982 PROSER3Q2NL68 480 aa15.31■□□□□ 0.04
CLSTN3-209ENST00000539982 COPS6Q7L5N1 327 aa15.31■□□□□ 0.04
CLSTN3-209ENST00000539982 PNNQ9H307 717 aaKnown RBP15.31■□□□□ 0.04
CLSTN3-209ENST00000539982 TRMT112Q9UI30 125 aaKnown RBP15.31■□□□□ 0.04
CLSTN3-209ENST00000539982 TSPYL4Q9UJ04 414 aa15.31■□□□□ 0.04
CLSTN3-209ENST00000539982 SH3TC1Q8TE82 1336 aa15.31■□□□□ 0.04
CLSTN3-209ENST00000539982 ANKRD36CQ5JPF3 1778 aa15.31■□□□□ 0.04
CLSTN3-209ENST00000539982 PSMD14O00487 310 aa15.3■□□□□ 0.04
CLSTN3-209ENST00000539982 ANXA1P04083 346 aa15.3■□□□□ 0.04
CLSTN3-209ENST00000539982 ZNF157P51786 506 aaPredicted RBP15.3■□□□□ 0.04
CLSTN3-209ENST00000539982 TBC1D10BQ4KMP7 808 aaPredicted RBP15.3■□□□□ 0.04
CLSTN3-209ENST00000539982 PDE4DIPQ5VU43 2346 aa15.3■□□□□ 0.04
CLSTN3-209ENST00000539982 DCPSQ96C86 337 aaKnown RBP15.3■□□□□ 0.04
CLSTN3-209ENST00000539982 RNF186Q9NXI6 227 aa15.3■□□□□ 0.04
CLSTN3-209ENST00000539982 LAMB2P55268 1798 aa15.29■□□□□ 0.04
CLSTN3-209ENST00000539982 TRPA1O75762 1119 aa15.29■□□□□ 0.04
CLSTN3-209ENST00000539982 EGFRP00533 1210 aa15.29■□□□□ 0.04
CLSTN3-209ENST00000539982 RPS12P25398 132 aaKnown RBP15.29■□□□□ 0.04
CLSTN3-209ENST00000539982 AIMP1Q12904 312 aaKnown RBP15.29■□□□□ 0.04
CLSTN3-209ENST00000539982 DBNDD1Q9H9R9 158 aa15.29■□□□□ 0.04
CLSTN3-209ENST00000539982 BABAM1Q9NWV8 329 aa15.29■□□□□ 0.04
CLSTN3-209ENST00000539982 NSFL1CQ9UNZ2 370 aaKnown RBP15.29■□□□□ 0.04
CLSTN3-209ENST00000539982 POLR2AP24928 1970 aaKnown RBP15.28■□□□□ 0.04
CLSTN3-209ENST00000539982 SOX10P56693 466 aa15.28■□□□□ 0.04
CLSTN3-209ENST00000539982 RBM26Q5T8P6 1007 aaKnown RBP15.28■□□□□ 0.04
CLSTN3-209ENST00000539982 XAGE3Q8WTP9 111 aa15.28■□□□□ 0.04
CLSTN3-209ENST00000539982 DUOX1Q9NRD9 1551 aa15.28■□□□□ 0.04
CLSTN3-209ENST00000539982 MAPK8IP3Q9UPT6 1336 aa15.27■□□□□ 0.04
CLSTN3-209ENST00000539982 ADM5C9JUS6 153 aa15.27■□□□□ 0.04
CLSTN3-209ENST00000539982 RIMBP2O15034 1052 aa15.27■□□□□ 0.04
CLSTN3-209ENST00000539982 REM2Q8IYK8 340 aaPredicted RBP15.27■□□□□ 0.04
CLSTN3-209ENST00000539982 CSRNP1Q96S65 589 aa15.27■□□□□ 0.04
CLSTN3-209ENST00000539982 KCNQ5Q9NR82 932 aa15.27■□□□□ 0.04
CLSTN3-209ENST00000539982 TAF1P21675 1872 aa15.27■□□□□ 0.03
CLSTN3-209ENST00000539982 C6orf229H3BNL8 230 aa15.26■□□□□ 0.03
CLSTN3-209ENST00000539982 SLC10A3P09131 477 aa15.26■□□□□ 0.03
CLSTN3-209ENST00000539982 SF3B3Q15393 1217 aaKnown RBP15.26■□□□□ 0.03
CLSTN3-209ENST00000539982 EYA3Q99504 573 aa15.26■□□□□ 0.03
CLSTN3-209ENST00000539982 POLLQ9UGP5 575 aa15.26■□□□□ 0.03
CLSTN3-209ENST00000539982 ECE2O60344 883 aa15.25■□□□□ 0.03
CLSTN3-209ENST00000539982 GPSM2P81274 684 aa15.25■□□□□ 0.03
CLSTN3-209ENST00000539982 DOK7Q18PE1 504 aa15.25■□□□□ 0.03
CLSTN3-209ENST00000539982 CTU1Q7Z7A3 348 aaKnown RBP15.25■□□□□ 0.03
CLSTN3-209ENST00000539982 SULF1Q8IWU6 871 aa15.25■□□□□ 0.03
CLSTN3-209ENST00000539982 NECTIN2Q92692 538 aa15.25■□□□□ 0.03
CLSTN3-209ENST00000539982 CELF1Q92879 486 aaKnown RBP15.25■□□□□ 0.03
CLSTN3-209ENST00000539982 RTL9Q8NET4 1388 aa15.24■□□□□ 0.03
CLSTN3-209ENST00000539982 LRRC37AA6NMS7 1700 aa15.24■□□□□ 0.03
CLSTN3-209ENST00000539982 AKAP11Q9UKA4 1901 aa15.24■□□□□ 0.03
CLSTN3-209ENST00000539982 VIL1P09327 827 aaKnown RBP15.24■□□□□ 0.03
CLSTN3-209ENST00000539982 RIPK4P57078 832 aa15.24■□□□□ 0.03
CLSTN3-209ENST00000539982 KIF4BQ2VIQ3 1234 aa15.24■□□□□ 0.03
CLSTN3-209ENST00000539982 PRPF38BQ5VTL8 546 aaKnown RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 173.8 ms