RNA–Protein interactions for RNA: ENST00000539208.5

GNE-204, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

TSL 2 BASIC

Gene GNE, Length 2,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-204ENST00000539208 ISCA1Q9BUE6 129 aa21.47■■□□□ 1.03
GNE-204ENST00000539208 ZBTB3Q9H5J0 574 aa21.47■■□□□ 1.03
GNE-204ENST00000539208 SMC3Q9UQE7 1217 aa21.47■■□□□ 1.03
GNE-204ENST00000539208 TAF5LO75529 589 aa21.47■■□□□ 1.03
GNE-204ENST00000539208 TRIM28Q13263 835 aaKnown RBP21.47■■□□□ 1.03
GNE-204ENST00000539208 CIAO1O76071 339 aa21.46■■□□□ 1.03
GNE-204ENST00000539208 ZSCAN22P10073 491 aaPredicted RBP21.46■■□□□ 1.03
GNE-204ENST00000539208 ZNF589Q86UQ0 364 aaPredicted RBP21.46■■□□□ 1.03
GNE-204ENST00000539208 EDC3Q96F86 508 aaKnown RBP21.46■■□□□ 1.03
GNE-204ENST00000539208 STX6O43752 255 aa21.45■■□□□ 1.02
GNE-204ENST00000539208 LARGE1O95461 756 aa21.45■■□□□ 1.02
GNE-204ENST00000539208 SYT1P21579 422 aa21.45■■□□□ 1.02
GNE-204ENST00000539208 TCIRG1Q13488 830 aa21.45■■□□□ 1.02
GNE-204ENST00000539208 ANKRD1Q15327 319 aa21.45■■□□□ 1.02
GNE-204ENST00000539208 TMEM87AQ8NBN3 555 aa21.45■■□□□ 1.02
GNE-204ENST00000539208 CHMP3Q9Y3E7 222 aa21.45■■□□□ 1.02
GNE-204ENST00000539208 LARP6Q9BRS8 491 aaKnown RBP21.44■■□□□ 1.02
GNE-204ENST00000539208 EYA2O00167 538 aa21.44■■□□□ 1.02
GNE-204ENST00000539208 PDIA4P13667 645 aaKnown RBP21.44■■□□□ 1.02
GNE-204ENST00000539208 NASPP49321 788 aaPredicted RBP21.43■■□□□ 1.02
GNE-204ENST00000539208 KRT32Q14532 448 aa21.43■■□□□ 1.02
GNE-204ENST00000539208 BLOC1S2Q6QNY1 142 aa21.43■■□□□ 1.02
GNE-204ENST00000539208 KBTBD3Q8NAB2 608 aa21.43■■□□□ 1.02
GNE-204ENST00000539208 TMEM63CQ9P1W3 806 aa21.43■■□□□ 1.02
GNE-204ENST00000539208 PALLDQ8WX93 1383 aa21.43■■□□□ 1.02
GNE-204ENST00000539208 CCDC83Q8IWF9 413 aa21.43■■□□□ 1.02
GNE-204ENST00000539208 PIGBQ92521 554 aa21.43■■□□□ 1.02
GNE-204ENST00000539208 FBXO3Q9UK99 471 aa21.43■■□□□ 1.02
GNE-204ENST00000539208 NSFL1CQ9UNZ2 370 aaKnown RBP21.43■■□□□ 1.02
GNE-204ENST00000539208 ATP6V1DQ9Y5K8 247 aa21.43■■□□□ 1.02
GNE-204ENST00000539208 DISP2A7MBM2 1401 aa21.42■■□□□ 1.02
GNE-204ENST00000539208 ZNF609O15014 1411 aa21.42■■□□□ 1.02
GNE-204ENST00000539208 RPS6KB1P23443 525 aa21.42■■□□□ 1.02
GNE-204ENST00000539208 ME3Q16798 604 aa21.42■■□□□ 1.02
GNE-204ENST00000539208 MCMDC2Q4G0Z9 681 aa21.42■■□□□ 1.02
GNE-204ENST00000539208 DNAJC2Q99543 621 aaKnown RBP21.42■■□□□ 1.02
GNE-204ENST00000539208 RBM27Q9P2N5 1060 aaKnown RBP21.42■■□□□ 1.02
GNE-204ENST00000539208 BTG4Q9NY30 223 aa21.41■■□□□ 1.02
GNE-204ENST00000539208 U3KPZ7 1027 aaPredicted RBP21.41■■□□□ 1.02
GNE-204ENST00000539208 SH3TC1Q8TE82 1336 aa21.41■■□□□ 1.02
GNE-204ENST00000539208 COL14A1Q05707 1796 aaKnown RBP21.41■■□□□ 1.02
GNE-204ENST00000539208 GJB2P29033 226 aa21.41■■□□□ 1.02
GNE-204ENST00000539208 LRSAM1Q6UWE0 723 aa21.41■■□□□ 1.02
GNE-204ENST00000539208 ASAP1Q9ULH1 1129 aa21.41■■□□□ 1.02
GNE-204ENST00000539208 TPCN1Q9ULQ1 816 aa21.41■■□□□ 1.02
GNE-204ENST00000539208 STARD3NLO95772 234 aa21.4■■□□□ 1.02
GNE-204ENST00000539208 F13A1P00488 732 aa21.4■■□□□ 1.02
GNE-204ENST00000539208 ST3GAL1Q11201 340 aa21.4■■□□□ 1.02
GNE-204ENST00000539208 USP48Q86UV5 1035 aa21.4■■□□□ 1.02
GNE-204ENST00000539208 PPP1R9BQ96SB3 815 aa21.4■■□□□ 1.02
GNE-204ENST00000539208 PLA2G12BQ9BX93 195 aa21.4■■□□□ 1.02
GNE-204ENST00000539208 PCCAP05165 728 aaPredicted RBP21.4■■□□□ 1.02
GNE-204ENST00000539208 CCDC173Q0VFZ6 552 aa21.4■■□□□ 1.02
GNE-204ENST00000539208 KIF6Q6ZMV9 814 aa21.4■■□□□ 1.02
GNE-204ENST00000539208 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.4■■□□□ 1.02
GNE-204ENST00000539208 SYAP1Q96A49 352 aaPredicted RBP21.4■■□□□ 1.02
GNE-204ENST00000539208 LRP6O75581 1613 aa21.39■■□□□ 1.02
GNE-204ENST00000539208 DNAJC10Q8IXB1 793 aa21.39■■□□□ 1.01
GNE-204ENST00000539208 NEUROD6Q96NK8 337 aa21.39■■□□□ 1.01
GNE-204ENST00000539208 ITGB4P16144 1822 aa21.39■■□□□ 1.01
GNE-204ENST00000539208 SPEF2Q9C093 1822 aa21.39■■□□□ 1.01
GNE-204ENST00000539208 PRIM1P49642 420 aaKnown RBP21.38■■□□□ 1.01
GNE-204ENST00000539208 LRRC24Q50LG9 513 aa21.38■■□□□ 1.01
GNE-204ENST00000539208 DDX46Q7L014 1031 aaKnown RBP21.38■■□□□ 1.01
GNE-204ENST00000539208 ANP32BQ92688 251 aaKnown RBP21.38■■□□□ 1.01
GNE-204ENST00000539208 RRAGDQ9NQL2 400 aaPredicted RBP21.38■■□□□ 1.01
GNE-204ENST00000539208 HELLSQ9NRZ9 838 aa21.38■■□□□ 1.01
GNE-204ENST00000539208 PAG1Q9NWQ8 432 aa21.38■■□□□ 1.01
GNE-204ENST00000539208 NDUFB9Q9Y6M9 179 aa21.38■■□□□ 1.01
GNE-204ENST00000539208 TIMM10P62072 90 aa21.38■■□□□ 1.01
GNE-204ENST00000539208 MTMR6Q9Y217 621 aa21.37■■□□□ 1.01
GNE-204ENST00000539208 TAF6LQ9Y6J9 622 aa21.37■■□□□ 1.01
GNE-204ENST00000539208 PLCH1Q4KWH8 1693 aa21.37■■□□□ 1.01
GNE-204ENST00000539208 TOB2Q14106 344 aaPredicted RBP21.37■■□□□ 1.01
GNE-204ENST00000539208 CCDC57Q2TAC2 916 aa21.37■■□□□ 1.01
GNE-204ENST00000539208 ZBTB38Q8NAP3 1195 aaPredicted RBP21.37■■□□□ 1.01
GNE-204ENST00000539208 ZNF594Q96JF6 807 aaPredicted RBP21.37■■□□□ 1.01
GNE-204ENST00000539208 RBSNQ9H1K0 784 aa21.37■■□□□ 1.01
GNE-204ENST00000539208 BCL9O00512 1426 aa21.36■■□□□ 1.01
GNE-204ENST00000539208 CSF1RP07333 972 aa21.36■■□□□ 1.01
GNE-204ENST00000539208 CEP126Q9P2H0 1117 aa21.36■■□□□ 1.01
GNE-204ENST00000539208 MAP3K15Q6ZN16 1313 aa21.36■■□□□ 1.01
GNE-204ENST00000539208 A0A1B0GUL7 405 aa21.36■■□□□ 1.01
GNE-204ENST00000539208 GIGYF2Q6Y7W6 1299 aaKnown RBP21.36■■□□□ 1.01
GNE-204ENST00000539208 SYCE3A1L190 88 aa21.35■■□□□ 1.01
GNE-204ENST00000539208 GOLIM4O00461 696 aa21.35■■□□□ 1.01
GNE-204ENST00000539208 GADD45BO75293 160 aaPredicted RBP21.35■■□□□ 1.01
GNE-204ENST00000539208 COL9A3Q14050 684 aaPredicted RBP21.35■■□□□ 1.01
GNE-204ENST00000539208 NECAB1Q8N987 351 aa21.35■■□□□ 1.01
GNE-204ENST00000539208 NEK1Q96PY6 1258 aa21.35■■□□□ 1.01
GNE-204ENST00000539208 SEC62Q99442 399 aaKnown RBP21.35■■□□□ 1.01
GNE-204ENST00000539208 AKAP2Q9Y2D5 859 aa21.35■■□□□ 1.01
GNE-204ENST00000539208 COL22A1Q8NFW1 1626 aaPredicted RBP21.35■■□□□ 1.01
GNE-204ENST00000539208 CDHR2Q9BYE9 1310 aa21.35■■□□□ 1.01
GNE-204ENST00000539208 PDCP20941 246 aa21.34■■□□□ 1.01
GNE-204ENST00000539208 ZMYM1Q5SVZ6 1142 aa21.34■■□□□ 1.01
GNE-204ENST00000539208 DSCC1Q9BVC3 393 aa21.34■■□□□ 1.01
GNE-204ENST00000539208 PUS3Q9BZE2 481 aaKnown RBP21.34■■□□□ 1.01
GNE-204ENST00000539208 GDPD2Q9HCC8 539 aa21.34■■□□□ 1.01
GNE-204ENST00000539208 CNPY2Q9Y2B0 182 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms