RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 TMEM88BA6NKF7 163 aa23.05■■□□□ 1.28
PCF11-206ENST00000533018 ITGBL1O95965 494 aaPredicted RBP23.05■■□□□ 1.28
PCF11-206ENST00000533018 HSPA1AP0DMV8 641 aaKnown RBP23.05■■□□□ 1.28
PCF11-206ENST00000533018 HSPA1BP0DMV9 641 aaKnown RBP23.05■■□□□ 1.28
PCF11-206ENST00000533018 EPS15P42566 896 aa23.04■■□□□ 1.28
PCF11-206ENST00000533018 PHAXQ9H814 394 aaKnown RBP23.04■■□□□ 1.28
PCF11-206ENST00000533018 ZNRF3Q9ULT6 936 aa23.04■■□□□ 1.28
PCF11-206ENST00000533018 DDX60Q8IY21 1712 aaKnown RBP23.04■■□□□ 1.28
PCF11-206ENST00000533018 SCNN1DP51172 638 aa23.03■■□□□ 1.28
PCF11-206ENST00000533018 COL13A1Q5TAT6 717 aaPredicted RBP23.03■■□□□ 1.28
PCF11-206ENST00000533018 RTFDC1Q9BY42 306 aaPredicted RBP23.03■■□□□ 1.28
PCF11-206ENST00000533018 ADAMTSL1Q8N6G6 1762 aa23.03■■□□□ 1.28
PCF11-206ENST00000533018 TMC4Q7Z404 712 aa23.02■■□□□ 1.28
PCF11-206ENST00000533018 IRS4O14654 1257 aaPredicted RBP23.01■■□□□ 1.27
PCF11-206ENST00000533018 C8orf58Q8NAV2 365 aa23.01■■□□□ 1.27
PCF11-206ENST00000533018 LTBP1Q14766 1721 aa23.01■■□□□ 1.27
PCF11-206ENST00000533018 CXCL9Q07325 125 aa23■■□□□ 1.27
PCF11-206ENST00000533018 KIAA2012Q0VF49 1180 aa23■■□□□ 1.27
PCF11-206ENST00000533018 MYD88Q99836 296 aa23■■□□□ 1.27
PCF11-206ENST00000533018 CHMP4AQ9BY43 222 aa23■■□□□ 1.27
PCF11-206ENST00000533018 CNTNAP1P78357 1384 aa23■■□□□ 1.27
PCF11-206ENST00000533018 TRIM28Q13263 835 aaKnown RBP22.99■■□□□ 1.27
PCF11-206ENST00000533018 SF3B3Q15393 1217 aaKnown RBP22.99■■□□□ 1.27
PCF11-206ENST00000533018 CCDC184Q52MB2 194 aa22.99■■□□□ 1.27
PCF11-206ENST00000533018 CCDC30Q5VVM6 783 aa22.99■■□□□ 1.27
PCF11-206ENST00000533018 USP50Q70EL3 339 aaPredicted RBP22.99■■□□□ 1.27
PCF11-206ENST00000533018 CELF1Q92879 486 aaKnown RBP22.99■■□□□ 1.27
PCF11-206ENST00000533018 NSFL1CQ9UNZ2 370 aaKnown RBP22.99■■□□□ 1.27
PCF11-206ENST00000533018 RAD17O75943 681 aa22.98■■□□□ 1.27
PCF11-206ENST00000533018 CIAPIN1Q6FI81 312 aa22.98■■□□□ 1.27
PCF11-206ENST00000533018 ZBTB38Q8NAP3 1195 aaPredicted RBP22.98■■□□□ 1.27
PCF11-206ENST00000533018 BCL2L13Q9BXK5 485 aa22.98■■□□□ 1.27
PCF11-206ENST00000533018 ABT1Q9ULW3 272 aaKnown RBP22.98■■□□□ 1.27
PCF11-206ENST00000533018 DDX58O95786 925 aaKnown RBP22.97■■□□□ 1.27
PCF11-206ENST00000533018 TNIP1Q15025 636 aa22.97■■□□□ 1.27
PCF11-206ENST00000533018 TSR2Q969E8 191 aaKnown RBP22.97■■□□□ 1.27
PCF11-206ENST00000533018 ADARB2Q9NS39 739 aaKnown RBP22.97■■□□□ 1.27
PCF11-206ENST00000533018 GPRC5DQ9NZD1 345 aa22.97■■□□□ 1.27
PCF11-206ENST00000533018 C6orf229H3BNL8 230 aa22.96■■□□□ 1.27
PCF11-206ENST00000533018 HSP90B1P14625 803 aaKnown RBP22.96■■□□□ 1.27
PCF11-206ENST00000533018 GMPSP49915 693 aaPredicted RBP22.96■■□□□ 1.27
PCF11-206ENST00000533018 WASHC4Q2M389 1173 aa22.96■■□□□ 1.27
PCF11-206ENST00000533018 RIMBP2O15034 1052 aa22.95■■□□□ 1.26
PCF11-206ENST00000533018 VEGFBP49765 207 aa22.95■■□□□ 1.26
PCF11-206ENST00000533018 DEFB115Q30KQ5 88 aa22.95■■□□□ 1.26
PCF11-206ENST00000533018 TNS4Q8IZW8 715 aa22.95■■□□□ 1.26
PCF11-206ENST00000533018 TSPYL6Q8N831 410 aa22.95■■□□□ 1.26
PCF11-206ENST00000533018 LRRC37AA6NMS7 1700 aa22.94■■□□□ 1.26
PCF11-206ENST00000533018 ZEB1P37275 1124 aaPredicted RBP22.94■■□□□ 1.26
PCF11-206ENST00000533018 RPS8P62241 208 aaKnown RBP22.94■■□□□ 1.26
PCF11-206ENST00000533018 CCDC191Q8NCU4 936 aa22.94■■□□□ 1.26
PCF11-206ENST00000533018 JARID2Q92833 1246 aaPredicted RBP22.94■■□□□ 1.26
PCF11-206ENST00000533018 CWC25Q9NXE8 425 aaPredicted RBP22.94■■□□□ 1.26
PCF11-206ENST00000533018 GPSM2P81274 684 aa22.93■■□□□ 1.26
PCF11-206ENST00000533018 FMR1Q06787 632 aaKnown RBP eCLIP22.93■■□□□ 1.261e-6■■■■■ 35.7
PCF11-206ENST00000533018 STK31Q9BXU1 1019 aa22.93■■□□□ 1.26
PCF11-206ENST00000533018 PAXIP1Q6ZW49 1069 aaPredicted RBP22.92■■□□□ 1.26
PCF11-206ENST00000533018 CCDC85AQ96PX6 553 aaPredicted RBP22.92■■□□□ 1.26
PCF11-206ENST00000533018 METTL22Q9BUU2 404 aaPredicted RBP22.92■■□□□ 1.26
PCF11-206ENST00000533018 DBNDD1Q9H9R9 158 aa22.92■■□□□ 1.26
PCF11-206ENST00000533018 MRS2Q9HD23 443 aa22.92■■□□□ 1.26
PCF11-206ENST00000533018 MAP3K2Q9Y2U5 619 aa22.92■■□□□ 1.26
PCF11-206ENST00000533018 DUOX1Q9NRD9 1551 aa22.92■■□□□ 1.26
PCF11-206ENST00000533018 YDJCA8MPS7 323 aa22.91■■□□□ 1.26
PCF11-206ENST00000533018 TRAF5O00463 557 aa22.91■■□□□ 1.26
PCF11-206ENST00000533018 ANP32CO43423 234 aa22.91■■□□□ 1.26
PCF11-206ENST00000533018 PCCAP05165 728 aaPredicted RBP22.91■■□□□ 1.26
PCF11-206ENST00000533018 CCDC152Q4G0S7 254 aa22.91■■□□□ 1.26
PCF11-206ENST00000533018 WWC1Q8IX03 1113 aa22.91■■□□□ 1.26
PCF11-206ENST00000533018 AIDAQ96BJ3 306 aa22.91■■□□□ 1.26
PCF11-206ENST00000533018 EYA3Q99504 573 aa22.91■■□□□ 1.26
PCF11-206ENST00000533018 SEC31BQ9NQW1 1179 aa22.91■■□□□ 1.26
PCF11-206ENST00000533018 POLLQ9UGP5 575 aa22.91■■□□□ 1.26
PCF11-206ENST00000533018 TRPM7Q96QT4 1865 aa22.91■■□□□ 1.26
PCF11-206ENST00000533018 PDE8AO60658 829 aa22.9■■□□□ 1.26
PCF11-206ENST00000533018 CCDC27Q2M243 656 aa22.9■■□□□ 1.26
PCF11-206ENST00000533018 ANKIB1Q9P2G1 1089 aa22.9■■□□□ 1.26
PCF11-206ENST00000533018 CNOT7Q9UIV1 285 aaKnown RBP22.9■■□□□ 1.26
PCF11-206ENST00000533018 COL4A1P02462 1669 aa22.9■■□□□ 1.26
PCF11-206ENST00000533018 CDHR2Q9BYE9 1310 aa22.89■■□□□ 1.26
PCF11-206ENST00000533018 PI4KAP2A4QPH2 592 aa22.89■■□□□ 1.25
PCF11-206ENST00000533018 RASSF10A6NK89 507 aa22.89■■□□□ 1.25
PCF11-206ENST00000533018 G3V3G9 751 aa22.89■■□□□ 1.25
PCF11-206ENST00000533018 H7C1D1 291 aa22.89■■□□□ 1.25
PCF11-206ENST00000533018 CAPN15O75808 1086 aa22.89■■□□□ 1.25
PCF11-206ENST00000533018 DOK7Q18PE1 504 aa22.89■■□□□ 1.25
PCF11-206ENST00000533018 TWISTNBQ3B726 338 aaPredicted RBP22.89■■□□□ 1.25
PCF11-206ENST00000533018 DCAF8Q5TAQ9 597 aa22.89■■□□□ 1.25
PCF11-206ENST00000533018 KSR2Q6VAB6 950 aa22.89■■□□□ 1.25
PCF11-206ENST00000533018 PI4KAP1Q8N8J0 262 aa22.89■■□□□ 1.25
PCF11-206ENST00000533018 GPR101Q96P66 508 aaPredicted RBP22.89■■□□□ 1.25
PCF11-206ENST00000533018 ZBTB12Q9Y330 459 aaPredicted RBP22.89■■□□□ 1.25
PCF11-206ENST00000533018 SALL2Q9Y467 1007 aaPredicted RBP22.89■■□□□ 1.25
PCF11-206ENST00000533018 NEXNQ0ZGT2 675 aa22.88■■□□□ 1.25
PCF11-206ENST00000533018 GRM1Q13255 1194 aa22.88■■□□□ 1.25
PCF11-206ENST00000533018 TBC1D16Q8TBP0 767 aa22.88■■□□□ 1.25
PCF11-206ENST00000533018 ZC3H12CQ9C0D7 883 aaKnown RBP22.88■■□□□ 1.25
PCF11-206ENST00000533018 PSMD14O00487 310 aa22.87■■□□□ 1.25
PCF11-206ENST00000533018 FOXN1O15353 648 aa22.87■■□□□ 1.25
PCF11-206ENST00000533018 ECE2O60344 883 aa22.87■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms