RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 RHOQP17081 205 aa4.84□□□□□ -1.63
CD44-234ENST00000531873 HOXB4P17483 251 aaPredicted RBP4.84□□□□□ -1.63
CD44-234ENST00000531873 PLCB3Q01970 1234 aa4.84□□□□□ -1.63
CD44-234ENST00000531873 ENOX2Q16206 610 aaKnown RBP4.84□□□□□ -1.63
CD44-234ENST00000531873 RIPOR1Q6ZS17 1223 aa4.84□□□□□ -1.63
CD44-234ENST00000531873 CD163Q86VB7 1156 aa4.84□□□□□ -1.63
CD44-234ENST00000531873 DUSP9Q99956 384 aaKnown RBP4.84□□□□□ -1.63
CD44-234ENST00000531873 BACH2Q9BYV9 841 aa4.84□□□□□ -1.63
CD44-234ENST00000531873 NIF3L1Q9GZT8 377 aa4.84□□□□□ -1.63
CD44-234ENST00000531873 PARP2Q9UGN5 583 aa4.84□□□□□ -1.63
CD44-234ENST00000531873 PNMA6FA0A0J9YX94 578 aa4.83□□□□□ -1.64
CD44-234ENST00000531873 SPATA31C2B4DYI2 1134 aa4.83□□□□□ -1.64
CD44-234ENST00000531873 TGFBR3LH3BV60 316 aa4.83□□□□□ -1.64
CD44-234ENST00000531873 ATP4AP20648 1035 aa4.83□□□□□ -1.64
CD44-234ENST00000531873 DAB2P98082 770 aa4.83□□□□□ -1.64
CD44-234ENST00000531873 ZMYM1Q5SVZ6 1142 aa4.83□□□□□ -1.64
CD44-234ENST00000531873 C1orf229Q6ZS94 237 aaPredicted RBP4.83□□□□□ -1.64
CD44-234ENST00000531873 TMC4Q7Z404 712 aa4.83□□□□□ -1.64
CD44-234ENST00000531873 GPR152Q8TDT2 470 aa4.83□□□□□ -1.64
CD44-234ENST00000531873 NUDT16Q96DE0 195 aaKnown RBP4.83□□□□□ -1.64
CD44-234ENST00000531873 HSH2DQ96JZ2 352 aa4.83□□□□□ -1.64
CD44-234ENST00000531873 ZDHHC3Q9NYG2 299 aa4.83□□□□□ -1.64
CD44-234ENST00000531873 DMGDHQ9UI17 866 aaKnown RBP4.83□□□□□ -1.64
CD44-234ENST00000531873 GDF2Q9UK05 429 aaPredicted RBP4.83□□□□□ -1.64
CD44-234ENST00000531873 A6NHS1 94 aa4.82□□□□□ -1.64
CD44-234ENST00000531873 PIK3R2O00459 728 aa4.82□□□□□ -1.64
CD44-234ENST00000531873 OPLAHO14841 1288 aa4.82□□□□□ -1.64
CD44-234ENST00000531873 USP5P45974 858 aa4.82□□□□□ -1.64
CD44-234ENST00000531873 HDLBPQ00341 1268 aaKnown RBP4.82□□□□□ -1.64
CD44-234ENST00000531873 ORC1Q13415 861 aa4.82□□□□□ -1.64
CD44-234ENST00000531873 WDR44Q5JSH3 913 aa4.82□□□□□ -1.64
CD44-234ENST00000531873 GNASQ5JWF2 1037 aa4.82□□□□□ -1.64
CD44-234ENST00000531873 SLC27A3Q5K4L6 730 aa4.82□□□□□ -1.64
CD44-234ENST00000531873 ZNF280CQ8ND82 737 aa4.82□□□□□ -1.64
CD44-234ENST00000531873 RHPN1Q8TCX5 695 aa4.82□□□□□ -1.64
CD44-234ENST00000531873 EDARADDQ8WWZ3 215 aa4.82□□□□□ -1.64
CD44-234ENST00000531873 C8orf37Q96NL8 207 aa4.82□□□□□ -1.64
CD44-234ENST00000531873 GGNBP2Q9H3C7 697 aa4.82□□□□□ -1.64
CD44-234ENST00000531873 SEMA6BQ9H3T3 888 aa4.82□□□□□ -1.64
CD44-234ENST00000531873 SUV39H2Q9H5I1 410 aa4.82□□□□□ -1.64
CD44-234ENST00000531873 MICAL2O94851 1124 aa4.81□□□□□ -1.64
CD44-234ENST00000531873 GRNP28799 593 aaKnown RBP4.81□□□□□ -1.64
CD44-234ENST00000531873 PHKA2P46019 1235 aa4.81□□□□□ -1.64
CD44-234ENST00000531873 GRIN2CQ14957 1233 aa4.81□□□□□ -1.64
CD44-234ENST00000531873 TRIP4Q15650 581 aaPredicted RBP4.81□□□□□ -1.64
CD44-234ENST00000531873 NBPF1Q3BBV0 1214 aa4.81□□□□□ -1.64
CD44-234ENST00000531873 IER5Q5VY09 327 aa4.81□□□□□ -1.64
CD44-234ENST00000531873 KRTAP19-1Q8IUB9 90 aa4.81□□□□□ -1.64
CD44-234ENST00000531873 SUSD3Q96L08 255 aa4.81□□□□□ -1.64
CD44-234ENST00000531873 CSRNP1Q96S65 589 aa4.81□□□□□ -1.64
CD44-234ENST00000531873 EIF1AYO14602 144 aaKnown RBP4.8□□□□□ -1.64
CD44-234ENST00000531873 GNB5O14775 395 aa4.8□□□□□ -1.64
CD44-234ENST00000531873 SCAMP3O14828 347 aaKnown RBP4.8□□□□□ -1.64
CD44-234ENST00000531873 GTF2E1P29083 439 aaPredicted RBP4.8□□□□□ -1.64
CD44-234ENST00000531873 CHRNA4P43681 627 aa4.8□□□□□ -1.64
CD44-234ENST00000531873 IDH3AP50213 366 aa4.8□□□□□ -1.64
CD44-234ENST00000531873 FGD1P98174 961 aa4.8□□□□□ -1.64
CD44-234ENST00000531873 ATP2B2Q01814 1243 aa4.8□□□□□ -1.64
CD44-234ENST00000531873 XPCQ01831 940 aaPredicted RBP4.8□□□□□ -1.64
CD44-234ENST00000531873 RAD51AP2Q09MP3 1159 aa4.8□□□□□ -1.64
CD44-234ENST00000531873 NBPF10Q6P3W6 841 aaKnown RBP4.8□□□□□ -1.64
CD44-234ENST00000531873 METTL16Q86W50 562 aaKnown RBP4.8□□□□□ -1.64
CD44-234ENST00000531873 NUCKS1Q9H1E3 243 aaKnown RBP4.8□□□□□ -1.64
CD44-234ENST00000531873 RRAGCQ9HB90 399 aa4.8□□□□□ -1.64
CD44-234ENST00000531873 USP35Q9P2H5 1018 aa4.8□□□□□ -1.64
CD44-234ENST00000531873 USP20Q9Y2K6 914 aa4.8□□□□□ -1.64
CD44-234ENST00000531873 GPC6Q9Y625 555 aaPredicted RBP4.8□□□□□ -1.64
CD44-234ENST00000531873 SORBS3O60504 671 aa4.79□□□□□ -1.64
CD44-234ENST00000531873 CTSHP09668 335 aa4.79□□□□□ -1.64
CD44-234ENST00000531873 GNA15P30679 374 aa4.79□□□□□ -1.64
CD44-234ENST00000531873 INPP5BP32019 993 aa4.79□□□□□ -1.64
CD44-234ENST00000531873 ZC3H6P61129 1189 aaKnown RBP4.79□□□□□ -1.64
CD44-234ENST00000531873 FANCCQ00597 558 aa4.79□□□□□ -1.64
CD44-234ENST00000531873 POU4F2Q12837 409 aa4.79□□□□□ -1.64
CD44-234ENST00000531873 PSMD2Q13200 908 aa4.79□□□□□ -1.64
CD44-234ENST00000531873 HIF1AQ16665 826 aa4.79□□□□□ -1.64
CD44-234ENST00000531873 C8orf34Q49A92 452 aa4.79□□□□□ -1.64
CD44-234ENST00000531873 ALG1LQ6GMV1 187 aa4.79□□□□□ -1.64
CD44-234ENST00000531873 GOLGA6L1Q8N7Z2 621 aa4.79□□□□□ -1.64
CD44-234ENST00000531873 FBF1Q8TES7 1133 aa4.79□□□□□ -1.64
CD44-234ENST00000531873 AIDAQ96BJ3 306 aa4.79□□□□□ -1.64
CD44-234ENST00000531873 GAS2L1Q99501 681 aaPredicted RBP4.79□□□□□ -1.64
CD44-234ENST00000531873 FOXD3Q9UJU5 478 aaPredicted RBP4.79□□□□□ -1.64
CD44-234ENST00000531873 KCNMB2Q9Y691 235 aa4.79□□□□□ -1.64
CD44-234ENST00000531873 F11P03951 625 aa4.78□□□□□ -1.64
CD44-234ENST00000531873 THBS1P07996 1170 aa4.78□□□□□ -1.64
CD44-234ENST00000531873 ERCC5P28715 1186 aaPredicted RBP4.78□□□□□ -1.64
CD44-234ENST00000531873 DOC2BQ14184 412 aa4.78□□□□□ -1.64
CD44-234ENST00000531873 FOXD4L6Q3SYB3 417 aaPredicted RBP4.78□□□□□ -1.64
CD44-234ENST00000531873 ARTNQ5T4W7 220 aa4.78□□□□□ -1.64
CD44-234ENST00000531873 C9orf131Q5VYM1 1079 aa4.78□□□□□ -1.64
CD44-234ENST00000531873 USPL1Q5W0Q7 1092 aa4.78□□□□□ -1.64
CD44-234ENST00000531873 FOXD4L3Q6VB84 417 aaPredicted RBP4.78□□□□□ -1.64
CD44-234ENST00000531873 SLCO4C1Q6ZQN7 724 aa4.78□□□□□ -1.64
CD44-234ENST00000531873 BTLAQ7Z6A9 289 aa4.78□□□□□ -1.64
CD44-234ENST00000531873 ZIC5Q96T25 663 aa4.78□□□□□ -1.64
CD44-234ENST00000531873 BCL11AQ9H165 835 aa4.78□□□□□ -1.64
CD44-234ENST00000531873 DNAJC25Q9H1X3 360 aa4.78□□□□□ -1.64
CD44-234ENST00000531873 MRS2Q9HD23 443 aa4.78□□□□□ -1.64
CD44-234ENST00000531873 FAM13BQ9NYF5 915 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 120.4 ms