RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 C8orf34Q49A92 452 aa7.92□□□□□ -1.14
CD44-215ENST00000525241 PDE12Q6L8Q7 609 aaKnown RBP7.92□□□□□ -1.14
CD44-215ENST00000525241 NLRP13Q86W25 1043 aa7.92□□□□□ -1.14
CD44-215ENST00000525241 FCHSD1Q86WN1 690 aa7.92□□□□□ -1.14
CD44-215ENST00000525241 WHAMMQ8TF30 809 aa7.92□□□□□ -1.14
CD44-215ENST00000525241 PNMA5Q96PV4 448 aa7.92□□□□□ -1.14
CD44-215ENST00000525241 CITED4Q96RK1 184 aa7.92□□□□□ -1.14
CD44-215ENST00000525241 MDFIQ99750 246 aa7.92□□□□□ -1.14
CD44-215ENST00000525241 DCTN4Q9UJW0 460 aa7.92□□□□□ -1.14
CD44-215ENST00000525241 IGHA2P01877 340 aa7.91□□□□□ -1.14
CD44-215ENST00000525241 RARAP10276 462 aa7.91□□□□□ -1.14
CD44-215ENST00000525241 LYPD4Q6UWN0 246 aa7.91□□□□□ -1.14
CD44-215ENST00000525241 C1orf229Q6ZS94 237 aaPredicted RBP7.91□□□□□ -1.14
CD44-215ENST00000525241 GOLGA6L1Q8N7Z2 621 aa7.91□□□□□ -1.14
CD44-215ENST00000525241 FAM129BQ96TA1 746 aa7.91□□□□□ -1.14
CD44-215ENST00000525241 RBCK1Q9BYM8 510 aa7.91□□□□□ -1.14
CD44-215ENST00000525241 ELP3Q9H9T3 547 aa7.91□□□□□ -1.14
CD44-215ENST00000525241 GDF2Q9UK05 429 aaPredicted RBP7.91□□□□□ -1.14
CD44-215ENST00000525241 MMP20O60882 483 aa7.9□□□□□ -1.14
CD44-215ENST00000525241 SLCO4C1Q6ZQN7 724 aa7.9□□□□□ -1.14
CD44-215ENST00000525241 TTC16Q8NEE8 873 aa7.9□□□□□ -1.14
CD44-215ENST00000525241 TNFRSF25Q93038 417 aa7.9□□□□□ -1.14
CD44-215ENST00000525241 TMEM63CQ9P1W3 806 aa7.9□□□□□ -1.14
CD44-215ENST00000525241 ADARB2-AS1A8MUL3 147 aa7.89□□□□□ -1.15
CD44-215ENST00000525241 CELA2BP08218 269 aaPredicted RBP7.89□□□□□ -1.15
CD44-215ENST00000525241 BCRP11274 1271 aa7.89□□□□□ -1.15
CD44-215ENST00000525241 MAPK1P28482 360 aa7.89□□□□□ -1.15
CD44-215ENST00000525241 MARSP56192 900 aaKnown RBP7.89□□□□□ -1.15
CD44-215ENST00000525241 EHHADHQ08426 723 aa7.89□□□□□ -1.15
CD44-215ENST00000525241 ZNF385CQ66K41 422 aaPredicted RBP7.89□□□□□ -1.15
CD44-215ENST00000525241 ZNF438Q7Z4V0 828 aa7.89□□□□□ -1.15
CD44-215ENST00000525241 TLR7Q9NYK1 1049 aaKnown RBP7.89□□□□□ -1.15
CD44-215ENST00000525241 OIP5O43482 229 aa7.88□□□□□ -1.15
CD44-215ENST00000525241 EPXP11678 715 aa7.88□□□□□ -1.15
CD44-215ENST00000525241 PDE3BQ13370 1112 aa7.88□□□□□ -1.15
CD44-215ENST00000525241 DHX32Q7L7V1 743 aaKnown RBP7.88□□□□□ -1.15
CD44-215ENST00000525241 TMC7Q7Z402 723 aa7.88□□□□□ -1.15
CD44-215ENST00000525241 LRRC4BQ9NT99 713 aa7.88□□□□□ -1.15
CD44-215ENST00000525241 ABI2Q9NYB9 513 aaPredicted RBP7.88□□□□□ -1.15
CD44-215ENST00000525241 ZBTB42B2RXF5 422 aa7.87□□□□□ -1.15
CD44-215ENST00000525241 GPR182O15218 404 aa7.87□□□□□ -1.15
CD44-215ENST00000525241 GALNT6Q8NCL4 622 aa7.87□□□□□ -1.15
CD44-215ENST00000525241 OR13H1Q8NG92 308 aa7.87□□□□□ -1.15
CD44-215ENST00000525241 EDARADDQ8WWZ3 215 aa7.87□□□□□ -1.15
CD44-215ENST00000525241 DNAJB12Q9NXW2 375 aaKnown RBP7.87□□□□□ -1.15
CD44-215ENST00000525241 CNTN3Q9P232 1028 aa7.87□□□□□ -1.15
CD44-215ENST00000525241 ELOA3CA0A087WX78 387 aaPredicted RBP7.86□□□□□ -1.15
CD44-215ENST00000525241 ELOA3DA6NLF2 546 aaPredicted RBP7.86□□□□□ -1.15
CD44-215ENST00000525241 SHISA8B8ZZ34 492 aa7.86□□□□□ -1.15
CD44-215ENST00000525241 TNFRSF21O75509 655 aa7.86□□□□□ -1.15
CD44-215ENST00000525241 HOXD8P13378 290 aaPredicted RBP7.86□□□□□ -1.15
CD44-215ENST00000525241 SOX18P35713 384 aa7.86□□□□□ -1.15
CD44-215ENST00000525241 ADH7P40394 386 aa7.86□□□□□ -1.15
CD44-215ENST00000525241 ELOA3BQ3SY89 546 aa7.86□□□□□ -1.15
CD44-215ENST00000525241 TTC39BQ5VTQ0 682 aaPredicted RBP7.86□□□□□ -1.15
CD44-215ENST00000525241 ELOA3Q8NG57 546 aa7.86□□□□□ -1.15
CD44-215ENST00000525241 TRPM4Q8TD43 1214 aa7.86□□□□□ -1.15
CD44-215ENST00000525241 TMC1Q8TDI8 760 aa7.86□□□□□ -1.15
CD44-215ENST00000525241 ASB16Q96NS5 453 aa7.86□□□□□ -1.15
CD44-215ENST00000525241 UBE2OQ9C0C9 1292 aaKnown RBP7.86□□□□□ -1.15
CD44-215ENST00000525241 CHRDQ9H2X0 955 aa7.86□□□□□ -1.15
CD44-215ENST00000525241 IGFLR1Q9H665 355 aa7.86□□□□□ -1.15
CD44-215ENST00000525241 FOXD3Q9UJU5 478 aaPredicted RBP7.86□□□□□ -1.15
CD44-215ENST00000525241 ARHGEF15O94989 841 aa7.85□□□□□ -1.15
CD44-215ENST00000525241 CYP2E1P05181 493 aaPredicted RBP7.85□□□□□ -1.15
CD44-215ENST00000525241 PSAPP07602 524 aa7.85□□□□□ -1.15
CD44-215ENST00000525241 NRLP54845 237 aa7.85□□□□□ -1.15
CD44-215ENST00000525241 GPLD1P80108 840 aa7.85□□□□□ -1.15
CD44-215ENST00000525241 CCDC27Q2M243 656 aa7.85□□□□□ -1.15
CD44-215ENST00000525241 C1orf127Q8N9H9 656 aa7.85□□□□□ -1.15
CD44-215ENST00000525241 ZSCAN1Q8NBB4 408 aa7.85□□□□□ -1.15
CD44-215ENST00000525241 DMRTB1Q96MA1 342 aa7.85□□□□□ -1.15
CD44-215ENST00000525241 INSM1Q01101 510 aaPredicted RBP7.84□□□□□ -1.15
CD44-215ENST00000525241 PLAURQ03405 335 aa7.84□□□□□ -1.15
CD44-215ENST00000525241 TBC1D8BQ0IIM8 1120 aa7.84□□□□□ -1.15
CD44-215ENST00000525241 DSC3Q14574 896 aa7.84□□□□□ -1.15
CD44-215ENST00000525241 ZSCAN29Q8IWY8 852 aaPredicted RBP7.84□□□□□ -1.15
CD44-215ENST00000525241 SVOPQ8N4V2 548 aa7.84□□□□□ -1.15
CD44-215ENST00000525241 ALKBH8Q96BT7 664 aaKnown RBP7.84□□□□□ -1.15
CD44-215ENST00000525241 BTBD6Q96KE9 485 aa7.84□□□□□ -1.15
CD44-215ENST00000525241 NIF3L1Q9GZT8 377 aa7.84□□□□□ -1.15
CD44-215ENST00000525241 SLC6A14Q9UN76 642 aa7.84□□□□□ -1.15
CD44-215ENST00000525241 STARD13Q9Y3M8 1113 aa7.84□□□□□ -1.15
CD44-215ENST00000525241 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.84□□□□□ -1.15
CD44-215ENST00000525241 TREHO43280 583 aa7.83□□□□□ -1.16
CD44-215ENST00000525241 MLLT1Q03111 559 aaPredicted RBP7.83□□□□□ -1.16
CD44-215ENST00000525241 PCSK7Q16549 785 aa7.83□□□□□ -1.16
CD44-215ENST00000525241 COL13A1Q5TAT6 717 aaPredicted RBP7.83□□□□□ -1.16
CD44-215ENST00000525241 TMCO4Q5TGY1 634 aa7.83□□□□□ -1.16
CD44-215ENST00000525241 DNAJC14Q6Y2X3 702 aaPredicted RBP7.83□□□□□ -1.16
CD44-215ENST00000525241 SNX29Q8TEQ0 813 aa7.83□□□□□ -1.16
CD44-215ENST00000525241 LOC102724428A0A0B4J2F2 783 aa7.82□□□□□ -1.16
CD44-215ENST00000525241 PHACTR2O75167 634 aa7.82□□□□□ -1.16
CD44-215ENST00000525241 ALAS2P22557 587 aa7.82□□□□□ -1.16
CD44-215ENST00000525241 SIK1P57059 783 aa7.82□□□□□ -1.16
CD44-215ENST00000525241 MAP3K10Q02779 954 aa7.82□□□□□ -1.16
CD44-215ENST00000525241 ORC1Q13415 861 aa7.82□□□□□ -1.16
CD44-215ENST00000525241 NSUN5Q96P11 429 aaKnown RBP7.82□□□□□ -1.16
CD44-215ENST00000525241 ZFYVE28Q9HCC9 887 aa7.82□□□□□ -1.16
CD44-215ENST00000525241 NAGPAQ9UK23 515 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms