RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 V9GYY5 206 aaPredicted RBP15.22■□□□□ 0.03
TCOF1-213ENST00000514442 SAMD9LQ8IVG5 1584 aa15.22■□□□□ 0.03
TCOF1-213ENST00000514442 DDX19AQ9NUU7 478 aaKnown RBP15.22■□□□□ 0.03
TCOF1-213ENST00000514442 RNMTO43148 476 aaKnown RBP15.21■□□□□ 0.03
TCOF1-213ENST00000514442 CBFA2T2O43439 604 aa15.21■□□□□ 0.03
TCOF1-213ENST00000514442 CEP85Q6P2H3 762 aa15.21■□□□□ 0.03
TCOF1-213ENST00000514442 SH2B1Q9NRF2 756 aaPredicted RBP15.21■□□□□ 0.03
TCOF1-213ENST00000514442 IQSEC3Q9UPP2 1182 aaPredicted RBP15.21■□□□□ 0.03
TCOF1-213ENST00000514442 PTPRTO14522 1441 aa15.21■□□□□ 0.03
TCOF1-213ENST00000514442 STX6O43752 255 aa15.21■□□□□ 0.03
TCOF1-213ENST00000514442 LTKP29376 864 aa15.21■□□□□ 0.03
TCOF1-213ENST00000514442 CCDC144CPQ8IYA2 1237 aa15.21■□□□□ 0.03
TCOF1-213ENST00000514442 C10orf67Q8IYJ2 551 aa15.21■□□□□ 0.03
TCOF1-213ENST00000514442 GOLGA8BA8MQT2 603 aa15.21■□□□□ 0.02
TCOF1-213ENST00000514442 TCEANC2Q96MN5 208 aa15.21■□□□□ 0.02
TCOF1-213ENST00000514442 C6orf229H3BNL8 230 aa15.2■□□□□ 0.02
TCOF1-213ENST00000514442 ALDH1L1O75891 902 aa15.2■□□□□ 0.02
TCOF1-213ENST00000514442 DDB1Q16531 1140 aa15.2■□□□□ 0.02
TCOF1-213ENST00000514442 CCAR1Q8IX12 1150 aaKnown RBP15.2■□□□□ 0.02
TCOF1-213ENST00000514442 SCAND2PQ9GZW5 306 aaPredicted RBP15.2■□□□□ 0.02
TCOF1-213ENST00000514442 MAGEC2Q9UBF1 373 aaPredicted RBP15.2■□□□□ 0.02
TCOF1-213ENST00000514442 TRIM35Q9UPQ4 493 aa15.2■□□□□ 0.02
TCOF1-213ENST00000514442 CNPY2Q9Y2B0 182 aa15.2■□□□□ 0.02
TCOF1-213ENST00000514442 FILIP1LQ4L180 1135 aa15.2■□□□□ 0.02
TCOF1-213ENST00000514442 CDC5LQ99459 802 aaKnown RBP15.2■□□□□ 0.02
TCOF1-213ENST00000514442 ZBTB40Q9NUA8 1239 aa15.2■□□□□ 0.02
TCOF1-213ENST00000514442 SSBP05455 408 aaKnown RBP eCLIP15.2■□□□□ 0.02
TCOF1-213ENST00000514442 TMEM63CQ9P1W3 806 aa15.2■□□□□ 0.02
TCOF1-213ENST00000514442 CDR1P51861 262 aa15.2■□□□□ 0.02
TCOF1-213ENST00000514442 TTC31Q49AM3 519 aaPredicted RBP15.2■□□□□ 0.02
TCOF1-213ENST00000514442 WASF1Q92558 559 aa15.2■□□□□ 0.02
TCOF1-213ENST00000514442 GBP3Q9H0R5 595 aa15.2■□□□□ 0.02
TCOF1-213ENST00000514442 ZFYVE16Q7Z3T8 1539 aa15.2■□□□□ 0.02
TCOF1-213ENST00000514442 IFIT3O14879 490 aaKnown RBP15.19■□□□□ 0.02
TCOF1-213ENST00000514442 ZSCAN12O43309 604 aa15.19■□□□□ 0.02
TCOF1-213ENST00000514442 C8orf76Q96K31 380 aa15.19■□□□□ 0.02
TCOF1-213ENST00000514442 TTC37Q6PGP7 1564 aa15.19■□□□□ 0.02
TCOF1-213ENST00000514442 NEO1Q92859 1461 aa15.19■□□□□ 0.02
TCOF1-213ENST00000514442 ZSCAN22P10073 491 aaPredicted RBP15.19■□□□□ 0.02
TCOF1-213ENST00000514442 RFC4P35249 363 aa15.19■□□□□ 0.02
TCOF1-213ENST00000514442 ERO1AQ96HE7 468 aa15.19■□□□□ 0.02
TCOF1-213ENST00000514442 GJB2P29033 226 aa15.19■□□□□ 0.02
TCOF1-213ENST00000514442 CAVIN2O95810 425 aa15.19■□□□□ 0.02
TCOF1-213ENST00000514442 CASQ1P31415 396 aa15.19■□□□□ 0.02
TCOF1-213ENST00000514442 ZNF165P49910 485 aa15.19■□□□□ 0.02
TCOF1-213ENST00000514442 NBPF6Q5VWK0 638 aa15.19■□□□□ 0.02
TCOF1-213ENST00000514442 NBPF5PQ86XG9 351 aaPredicted RBP15.19■□□□□ 0.02
TCOF1-213ENST00000514442 NBPF4Q96M43 638 aa15.19■□□□□ 0.02
TCOF1-213ENST00000514442 SLC12A7Q9Y666 1083 aa15.19■□□□□ 0.02
TCOF1-213ENST00000514442 ANO10Q9NW15 660 aa15.18■□□□□ 0.02
TCOF1-213ENST00000514442 UGGT1Q9NYU2 1555 aa15.18■□□□□ 0.02
TCOF1-213ENST00000514442 KAT6BQ8WYB5 2073 aa15.18■□□□□ 0.02
TCOF1-213ENST00000514442 TOM1O60784 492 aa15.18■□□□□ 0.02
TCOF1-213ENST00000514442 HMGB1P09429 215 aaKnown RBP15.18■□□□□ 0.02
TCOF1-213ENST00000514442 SKILP12757 684 aa15.18■□□□□ 0.02
TCOF1-213ENST00000514442 SIRT1Q96EB6 747 aa15.18■□□□□ 0.02
TCOF1-213ENST00000514442 ZFP91Q96JP5 570 aaPredicted RBP15.18■□□□□ 0.02
TCOF1-213ENST00000514442 TMEM2Q9UHN6 1383 aa15.18■□□□□ 0.02
TCOF1-213ENST00000514442 KRBA2Q6ZNG9 492 aa15.18■□□□□ 0.02
TCOF1-213ENST00000514442 CRACR2BQ8N4Y2 399 aaPredicted RBP15.18■□□□□ 0.02
TCOF1-213ENST00000514442 LINS1Q8NG48 757 aa15.18■□□□□ 0.02
TCOF1-213ENST00000514442 LRRC2Q9BYS8 371 aa15.18■□□□□ 0.02
TCOF1-213ENST00000514442 LGR6Q9HBX8 967 aa15.18■□□□□ 0.02
TCOF1-213ENST00000514442 SBNO1A3KN83 1393 aa15.18■□□□□ 0.02
TCOF1-213ENST00000514442 NPC1L1Q9UHC9 1359 aa15.18■□□□□ 0.02
TCOF1-213ENST00000514442 GOLGA8AA7E2F4 631 aa15.17■□□□□ 0.02
TCOF1-213ENST00000514442 DCAF5Q96JK2 942 aa15.17■□□□□ 0.02
TCOF1-213ENST00000514442 GTF3C6Q969F1 213 aa15.17■□□□□ 0.02
TCOF1-213ENST00000514442 BTG4Q9NY30 223 aa15.17■□□□□ 0.02
TCOF1-213ENST00000514442 NEK1Q96PY6 1258 aa15.17■□□□□ 0.02
TCOF1-213ENST00000514442 ESYT1Q9BSJ8 1104 aa15.17■□□□□ 0.02
TCOF1-213ENST00000514442 TFIP11Q9UBB9 837 aaKnown RBP15.17■□□□□ 0.02
TCOF1-213ENST00000514442 NECAB1Q8N987 351 aa15.16■□□□□ 0.02
TCOF1-213ENST00000514442 DCTPP1Q9H773 170 aa15.16■□□□□ 0.02
TCOF1-213ENST00000514442 TMOD2Q9NZR1 351 aa15.16■□□□□ 0.02
TCOF1-213ENST00000514442 A0A1B0GUL7 405 aa15.16■□□□□ 0.02
TCOF1-213ENST00000514442 ATP2B3Q16720 1220 aa15.16■□□□□ 0.02
TCOF1-213ENST00000514442 CCDC152Q4G0S7 254 aa15.16■□□□□ 0.02
TCOF1-213ENST00000514442 CAGE1Q8TC20 777 aa15.16■□□□□ 0.02
TCOF1-213ENST00000514442 PRM3Q9NNZ6 103 aa15.16■□□□□ 0.02
TCOF1-213ENST00000514442 NIP7Q9Y221 180 aaKnown RBP eCLIP15.16■□□□□ 0.02
TCOF1-213ENST00000514442 TTF1Q15361 905 aaPredicted RBP15.16■□□□□ 0.02
TCOF1-213ENST00000514442 ANO6Q4KMQ2 910 aa15.16■□□□□ 0.02
TCOF1-213ENST00000514442 CT47A1Q5JQC4 288 aaPredicted RBP15.16■□□□□ 0.02
TCOF1-213ENST00000514442 FAM193AP78312 1265 aa15.16■□□□□ 0.02
TCOF1-213ENST00000514442 IQCA1Q86XH1 822 aa15.16■□□□□ 0.02
TCOF1-213ENST00000514442 CTCFLQ8NI51 663 aaPredicted RBP15.16■□□□□ 0.02
TCOF1-213ENST00000514442 CTAGE5O15320 804 aa15.15■□□□□ 0.02
TCOF1-213ENST00000514442 MICU3Q86XE3 530 aa15.15■□□□□ 0.02
TCOF1-213ENST00000514442 DZIP3Q86Y13 1208 aaKnown RBP15.15■□□□□ 0.02
TCOF1-213ENST00000514442 USP26Q9BXU7 913 aa15.15■□□□□ 0.02
TCOF1-213ENST00000514442 TUBB4AP04350 444 aa15.15■□□□□ 0.02
TCOF1-213ENST00000514442 JAKMIP3Q5VZ66 844 aa15.15■□□□□ 0.02
TCOF1-213ENST00000514442 ZNF444Q8N0Y2 327 aaPredicted RBP15.15■□□□□ 0.02
TCOF1-213ENST00000514442 PRDM4Q9UKN5 801 aa15.15■□□□□ 0.02
TCOF1-213ENST00000514442 PATL2C9JE40 543 aaKnown RBP15.15■□□□□ 0.02
TCOF1-213ENST00000514442 TMEM132AQ24JP5 1023 aa15.15■□□□□ 0.02
TCOF1-213ENST00000514442 INTS4Q96HW7 963 aaKnown RBP15.15■□□□□ 0.02
TCOF1-213ENST00000514442 SHTN1A0MZ66 631 aa15.14■□□□□ 0.01
TCOF1-213ENST00000514442 POTEB2H3BUK9 544 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms