RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 AKT1S1Q96B36 256 aa19.51■□□□□ 0.71
SQSTM1-213ENST00000510187 LRRCC1Q9C099 1032 aa19.51■□□□□ 0.71
SQSTM1-213ENST00000510187 TFCP2L1Q9NZI6 479 aa19.51■□□□□ 0.71
SQSTM1-213ENST00000510187 AOX1Q06278 1338 aa19.51■□□□□ 0.71
SQSTM1-213ENST00000510187 NUP98P52948 1817 aa19.51■□□□□ 0.71
SQSTM1-213ENST00000510187 RGL2O15211 777 aa19.51■□□□□ 0.71
SQSTM1-213ENST00000510187 CCDC125Q86Z20 511 aa19.51■□□□□ 0.71
SQSTM1-213ENST00000510187 H7C1W4 665 aa19.5■□□□□ 0.71
SQSTM1-213ENST00000510187 APBB1O00213 710 aa19.5■□□□□ 0.71
SQSTM1-213ENST00000510187 SUCLG2Q96I99 432 aa19.5■□□□□ 0.71
SQSTM1-213ENST00000510187 NIP7Q9Y221 180 aaKnown RBP eCLIP19.5■□□□□ 0.71
SQSTM1-213ENST00000510187 UBR3Q6ZT12 1888 aa19.5■□□□□ 0.71
SQSTM1-213ENST00000510187 UBN2Q6ZU65 1347 aa19.5■□□□□ 0.71
SQSTM1-213ENST00000510187 USP42Q9H9J4 1324 aaKnown RBP19.5■□□□□ 0.71
SQSTM1-213ENST00000510187 GRPEL1Q9HAV7 217 aa19.49■□□□□ 0.71
SQSTM1-213ENST00000510187 BCL2L12Q9HB09 334 aa19.49■□□□□ 0.71
SQSTM1-213ENST00000510187 BCORQ6W2J9 1755 aa19.49■□□□□ 0.71
SQSTM1-213ENST00000510187 ANKRD36CQ5JPF3 1778 aa19.48■□□□□ 0.71
SQSTM1-213ENST00000510187 CASP7P55210 303 aa19.48■□□□□ 0.71
SQSTM1-213ENST00000510187 FOXD4L1Q9NU39 408 aa19.48■□□□□ 0.71
SQSTM1-213ENST00000510187 STAP2Q9UGK3 403 aa19.48■□□□□ 0.71
SQSTM1-213ENST00000510187 SCN7AQ01118 1682 aa19.48■□□□□ 0.71
SQSTM1-213ENST00000510187 CYP2E1P05181 493 aaPredicted RBP19.48■□□□□ 0.71
SQSTM1-213ENST00000510187 PARP10Q53GL7 1025 aa19.48■□□□□ 0.71
SQSTM1-213ENST00000510187 ZBTB38Q8NAP3 1195 aaPredicted RBP19.48■□□□□ 0.71
SQSTM1-213ENST00000510187 KAZALD1Q96I82 304 aa19.48■□□□□ 0.71
SQSTM1-213ENST00000510187 C4AP0C0L4 1744 aa19.47■□□□□ 0.71
SQSTM1-213ENST00000510187 EPB41L2O43491 1005 aaKnown RBP19.47■□□□□ 0.71
SQSTM1-213ENST00000510187 BAG4O95429 457 aaKnown RBP19.47■□□□□ 0.71
SQSTM1-213ENST00000510187 PCCAP05165 728 aaPredicted RBP19.47■□□□□ 0.71
SQSTM1-213ENST00000510187 MX1P20591 662 aa19.47■□□□□ 0.71
SQSTM1-213ENST00000510187 FAM89AQ96GI7 184 aa19.47■□□□□ 0.71
SQSTM1-213ENST00000510187 BICC1Q9H694 974 aaKnown RBP19.47■□□□□ 0.71
SQSTM1-213ENST00000510187 TRMT112Q9UI30 125 aaKnown RBP19.47■□□□□ 0.71
SQSTM1-213ENST00000510187 SUSD4Q5VX71 490 aa19.46■□□□□ 0.71
SQSTM1-213ENST00000510187 TBC1D9BQ66K14 1250 aa19.46■□□□□ 0.71
SQSTM1-213ENST00000510187 BICDL1Q6ZP65 573 aa19.46■□□□□ 0.71
SQSTM1-213ENST00000510187 PNMA6EA0A0J9YXQ4 647 aa19.45■□□□□ 0.7
SQSTM1-213ENST00000510187 FAM177BA6PVY3 158 aa19.45■□□□□ 0.7
SQSTM1-213ENST00000510187 MCM2P49736 904 aa19.45■□□□□ 0.7
SQSTM1-213ENST00000510187 KLHL40Q2TBA0 621 aa19.45■□□□□ 0.7
SQSTM1-213ENST00000510187 PPP1R42Q7Z4L9 355 aa19.45■□□□□ 0.7
SQSTM1-213ENST00000510187 IL17RAQ96F46 866 aa19.45■□□□□ 0.7
SQSTM1-213ENST00000510187 EXOC6BQ9Y2D4 811 aa19.45■□□□□ 0.7
SQSTM1-213ENST00000510187 ANAPC15P60006 121 aa19.45■□□□□ 0.7
SQSTM1-213ENST00000510187 EPHA10Q5JZY3 1008 aa19.45■□□□□ 0.7
SQSTM1-213ENST00000510187 FLAD1Q8NFF5 587 aa19.45■□□□□ 0.7
SQSTM1-213ENST00000510187 ESYT1Q9BSJ8 1104 aa19.45■□□□□ 0.7
SQSTM1-213ENST00000510187 UTP14AQ9BVJ6 771 aaKnown RBP19.45■□□□□ 0.7
SQSTM1-213ENST00000510187 SRGAP3O43295 1099 aa19.44■□□□□ 0.7
SQSTM1-213ENST00000510187 RAB11FIP3O75154 756 aa19.44■□□□□ 0.7
SQSTM1-213ENST00000510187 MCCP23508 829 aa19.44■□□□□ 0.7
SQSTM1-213ENST00000510187 SETDB2Q96T68 719 aa19.44■□□□□ 0.7
SQSTM1-213ENST00000510187 ANO8Q9HCE9 1232 aaPredicted RBP19.44■□□□□ 0.7
SQSTM1-213ENST00000510187 STK32BQ9NY57 414 aa19.44■□□□□ 0.7
SQSTM1-213ENST00000510187 MTX1Q13505 466 aa19.43■□□□□ 0.7
SQSTM1-213ENST00000510187 SLC15A2Q16348 729 aa19.43■□□□□ 0.7
SQSTM1-213ENST00000510187 COL23A1Q86Y22 540 aaPredicted RBP19.43■□□□□ 0.7
SQSTM1-213ENST00000510187 SYNE4Q8N205 404 aa19.43■□□□□ 0.7
SQSTM1-213ENST00000510187 SSH3Q8TE77 659 aa19.43■□□□□ 0.7
SQSTM1-213ENST00000510187 GYS1P13807 737 aa19.42■□□□□ 0.7
SQSTM1-213ENST00000510187 PANK2Q9BZ23 570 aa19.42■□□□□ 0.7
SQSTM1-213ENST00000510187 CDHR2Q9BYE9 1310 aa19.42■□□□□ 0.7
SQSTM1-213ENST00000510187 NTSR2O95665 410 aa19.42■□□□□ 0.7
SQSTM1-213ENST00000510187 PNPLA7Q6ZV29 1317 aa19.42■□□□□ 0.7
SQSTM1-213ENST00000510187 SH3TC1Q8TE82 1336 aa19.42■□□□□ 0.7
SQSTM1-213ENST00000510187 IRS4O14654 1257 aaPredicted RBP19.41■□□□□ 0.7
SQSTM1-213ENST00000510187 FOXO4P98177 505 aa19.41■□□□□ 0.7
SQSTM1-213ENST00000510187 POLA2Q14181 598 aa19.41■□□□□ 0.7
SQSTM1-213ENST00000510187 RABL6Q3YEC7 729 aaPredicted RBP19.41■□□□□ 0.7
SQSTM1-213ENST00000510187 CHMLP26374 656 aa19.4■□□□□ 0.7
SQSTM1-213ENST00000510187 LMBR1LQ6UX01 489 aa19.4■□□□□ 0.7
SQSTM1-213ENST00000510187 PLA2G12BQ9BX93 195 aa19.4■□□□□ 0.7
SQSTM1-213ENST00000510187 NFIXQ14938 502 aa19.39■□□□□ 0.7
SQSTM1-213ENST00000510187 NUTM1Q86Y26 1132 aa19.39■□□□□ 0.7
SQSTM1-213ENST00000510187 UPF1Q92900 1129 aaKnown RBP eCLIP19.39■□□□□ 0.79e-8■■■□□ 15.9
SQSTM1-213ENST00000510187 NBPF5PQ86XG9 351 aaPredicted RBP19.39■□□□□ 0.69
SQSTM1-213ENST00000510187 NYXQ9GZU5 481 aa19.39■□□□□ 0.69
SQSTM1-213ENST00000510187 RRAGDQ9NQL2 400 aaPredicted RBP19.39■□□□□ 0.69
SQSTM1-213ENST00000510187 CHMP3Q9Y3E7 222 aa19.39■□□□□ 0.69
SQSTM1-213ENST00000510187 GTF2E1P29083 439 aaPredicted RBP19.38■□□□□ 0.69
SQSTM1-213ENST00000510187 DDX49Q9Y6V7 483 aaKnown RBP19.38■□□□□ 0.69
SQSTM1-213ENST00000510187 CARMIL3Q8ND23 1372 aa19.38■□□□□ 0.69
SQSTM1-213ENST00000510187 PDE8AO60658 829 aa19.37■□□□□ 0.69
SQSTM1-213ENST00000510187 HCLS1P14317 486 aaPredicted RBP19.37■□□□□ 0.69
SQSTM1-213ENST00000510187 HSP90B1P14625 803 aaKnown RBP19.37■□□□□ 0.69
SQSTM1-213ENST00000510187 CUL4AQ13619 759 aa19.37■□□□□ 0.69
SQSTM1-213ENST00000510187 ERFEQ4G0M1 354 aa19.37■□□□□ 0.69
SQSTM1-213ENST00000510187 TPTE2Q6XPS3 522 aa19.37■□□□□ 0.69
SQSTM1-213ENST00000510187 GAS2L3Q86XJ1 694 aa19.37■□□□□ 0.69
SQSTM1-213ENST00000510187 NPHP1O15259 732 aa19.36■□□□□ 0.69
SQSTM1-213ENST00000510187 SURF6O75683 361 aaKnown RBP19.36■□□□□ 0.69
SQSTM1-213ENST00000510187 CTSWP56202 376 aa19.36■□□□□ 0.69
SQSTM1-213ENST00000510187 ZNF445P59923 1031 aa19.36■□□□□ 0.69
SQSTM1-213ENST00000510187 HSP90AB4PQ58FF6 505 aa19.36■□□□□ 0.69
SQSTM1-213ENST00000510187 NLGN1Q8N2Q7 840 aa19.36■□□□□ 0.69
SQSTM1-213ENST00000510187 INTS4Q96HW7 963 aaKnown RBP19.36■□□□□ 0.69
SQSTM1-213ENST00000510187 TRIM6-TRIM34B2RNG4 842 aa19.35■□□□□ 0.69
SQSTM1-213ENST00000510187 TM4SF1P30408 202 aa19.35■□□□□ 0.69
SQSTM1-213ENST00000510187 COL24A1Q17RW2 1714 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms