RNA–Protein interactions for RNA: ENST00000505589.1

NEDD9-210, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 571 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-210ENST00000505589 TTLL7Q6ZT98 887 aa13.04□□□□□ -0.32
NEDD9-210ENST00000505589 C2orf69Q8N8R5 385 aa13.04□□□□□ -0.32
NEDD9-210ENST00000505589 CNOT7Q9UIV1 285 aaKnown RBP13.04□□□□□ -0.32
NEDD9-210ENST00000505589 GMPSP49915 693 aaPredicted RBP13.03□□□□□ -0.32
NEDD9-210ENST00000505589 SAGE1Q9NXZ1 904 aa13.03□□□□□ -0.32
NEDD9-210ENST00000505589 ABCC12Q96J65 1359 aa13.03□□□□□ -0.32
NEDD9-210ENST00000505589 TRPM7Q96QT4 1865 aa13.02□□□□□ -0.32
NEDD9-210ENST00000505589 FMR1Q06787 632 aaKnown RBP eCLIP13.02□□□□□ -0.33
NEDD9-210ENST00000505589 DCPSQ96C86 337 aaKnown RBP13.02□□□□□ -0.33
NEDD9-210ENST00000505589 GLIS2Q9BZE0 524 aaPredicted RBP13.02□□□□□ -0.33
NEDD9-210ENST00000505589 ZNF408Q9H9D4 720 aa13.02□□□□□ -0.33
NEDD9-210ENST00000505589 UBN2Q6ZU65 1347 aa13.02□□□□□ -0.33
NEDD9-210ENST00000505589 HSP90B1P14625 803 aaKnown RBP13.01□□□□□ -0.33
NEDD9-210ENST00000505589 RPS12P25398 132 aaKnown RBP13.01□□□□□ -0.33
NEDD9-210ENST00000505589 HUNKP57058 714 aa13.01□□□□□ -0.33
NEDD9-210ENST00000505589 GRAPQ13588 217 aa13.01□□□□□ -0.33
NEDD9-210ENST00000505589 NFE2L2Q16236 605 aa13.01□□□□□ -0.33
NEDD9-210ENST00000505589 GRAPLQ8TC17 118 aaPredicted RBP13.01□□□□□ -0.33
NEDD9-210ENST00000505589 MAPK8IP3Q9UPT6 1336 aa13.01□□□□□ -0.33
NEDD9-210ENST00000505589 ABCC4O15439 1325 aa13□□□□□ -0.33
NEDD9-210ENST00000505589 RAD17O75943 681 aa13□□□□□ -0.33
NEDD9-210ENST00000505589 EIF2S2P20042 333 aaKnown RBP13□□□□□ -0.33
NEDD9-210ENST00000505589 WASHC4Q2M389 1173 aa13□□□□□ -0.33
NEDD9-210ENST00000505589 RGMBQ6NW40 437 aa13□□□□□ -0.33
NEDD9-210ENST00000505589 EYA3Q99504 573 aa13□□□□□ -0.33
NEDD9-210ENST00000505589 TRMT112Q9UI30 125 aaKnown RBP13□□□□□ -0.33
NEDD9-210ENST00000505589 TSPYL4Q9UJ04 414 aa13□□□□□ -0.33
NEDD9-210ENST00000505589 TSKSQ9UJT2 592 aa13□□□□□ -0.33
NEDD9-210ENST00000505589 NUP98P52948 1817 aa12.99□□□□□ -0.33
NEDD9-210ENST00000505589 SH3TC1Q8TE82 1336 aa12.99□□□□□ -0.33
NEDD9-210ENST00000505589 TCIRG1Q13488 830 aa12.99□□□□□ -0.33
NEDD9-210ENST00000505589 USP48Q86UV5 1035 aa12.99□□□□□ -0.33
NEDD9-210ENST00000505589 THSD7BQ9C0I4 1608 aa12.99□□□□□ -0.33
NEDD9-210ENST00000505589 HIRAP54198 1017 aaPredicted RBP12.98□□□□□ -0.33
NEDD9-210ENST00000505589 LMOD3Q0VAK6 560 aa12.98□□□□□ -0.33
NEDD9-210ENST00000505589 KRT26Q7Z3Y9 468 aa12.98□□□□□ -0.33
NEDD9-210ENST00000505589 NECTIN2Q92692 538 aa12.98□□□□□ -0.33
NEDD9-210ENST00000505589 GBA2Q9HCG7 927 aaPredicted RBP12.98□□□□□ -0.33
NEDD9-210ENST00000505589 G3V3G9 751 aa12.97□□□□□ -0.33
NEDD9-210ENST00000505589 ZNF157P51786 506 aaPredicted RBP12.97□□□□□ -0.33
NEDD9-210ENST00000505589 PKN2Q16513 984 aaKnown RBP12.97□□□□□ -0.33
NEDD9-210ENST00000505589 DCAF8Q5TAQ9 597 aa12.97□□□□□ -0.33
NEDD9-210ENST00000505589 COPS6Q7L5N1 327 aa12.97□□□□□ -0.33
NEDD9-210ENST00000505589 NLRP10Q86W26 655 aa12.97□□□□□ -0.33
NEDD9-210ENST00000505589 SULF1Q8IWU6 871 aa12.97□□□□□ -0.33
NEDD9-210ENST00000505589 MICALL2Q8IY33 904 aa12.97□□□□□ -0.33
NEDD9-210ENST00000505589 NSFL1CQ9UNZ2 370 aaKnown RBP12.97□□□□□ -0.33
NEDD9-210ENST00000505589 LTBP1Q14766 1721 aa12.96□□□□□ -0.33
NEDD9-210ENST00000505589 PLEKHF1Q96S99 279 aa12.96□□□□□ -0.33
NEDD9-210ENST00000505589 ZC3H12CQ9C0D7 883 aaKnown RBP12.96□□□□□ -0.33
NEDD9-210ENST00000505589 LAMB4A4D0S4 1761 aa12.95□□□□□ -0.34
NEDD9-210ENST00000505589 C6orf229H3BNL8 230 aa12.95□□□□□ -0.34
NEDD9-210ENST00000505589 HCLS1P14317 486 aaPredicted RBP12.95□□□□□ -0.34
NEDD9-210ENST00000505589 FKBP1BP68106 108 aa12.95□□□□□ -0.34
NEDD9-210ENST00000505589 AIMP1Q12904 312 aaKnown RBP12.95□□□□□ -0.34
NEDD9-210ENST00000505589 PDIA6Q15084 440 aa12.95□□□□□ -0.34
NEDD9-210ENST00000505589 C3orf67Q6ZVT6 689 aa12.95□□□□□ -0.34
NEDD9-210ENST00000505589 TRPM4Q8TD43 1214 aa12.95□□□□□ -0.34
NEDD9-210ENST00000505589 COL4A5P29400 1685 aa12.95□□□□□ -0.34
NEDD9-210ENST00000505589 PSMD14O00487 310 aa12.94□□□□□ -0.34
NEDD9-210ENST00000505589 RIPK4P57078 832 aa12.94□□□□□ -0.34
NEDD9-210ENST00000505589 KIF23Q02241 960 aaPredicted RBP12.94□□□□□ -0.34
NEDD9-210ENST00000505589 SF3B3Q15393 1217 aaKnown RBP12.94□□□□□ -0.34
NEDD9-210ENST00000505589 THUMPD2Q9BTF0 503 aaKnown RBP12.94□□□□□ -0.34
NEDD9-210ENST00000505589 RNF186Q9NXI6 227 aa12.94□□□□□ -0.34
NEDD9-210ENST00000505589 CASP8AP2Q9UKL3 1982 aa12.93□□□□□ -0.34
NEDD9-210ENST00000505589 TRPA1O75762 1119 aa12.93□□□□□ -0.34
NEDD9-210ENST00000505589 RBM26Q5T8P6 1007 aaKnown RBP12.93□□□□□ -0.34
NEDD9-210ENST00000505589 ANKRD13DQ6ZTN6 518 aa12.93□□□□□ -0.34
NEDD9-210ENST00000505589 SAMD7Q7Z3H4 446 aa12.93□□□□□ -0.34
NEDD9-210ENST00000505589 LRP10Q7Z4F1 713 aa12.93□□□□□ -0.34
NEDD9-210ENST00000505589 CTU1Q7Z7A3 348 aaKnown RBP12.93□□□□□ -0.34
NEDD9-210ENST00000505589 CHMP4AQ9BY43 222 aa12.93□□□□□ -0.34
NEDD9-210ENST00000505589 ZBTB12Q9Y330 459 aaPredicted RBP12.93□□□□□ -0.34
NEDD9-210ENST00000505589 YDJCA8MPS7 323 aa12.92□□□□□ -0.34
NEDD9-210ENST00000505589 FAM155AB1AL88 458 aaPredicted RBP12.92□□□□□ -0.34
NEDD9-210ENST00000505589 RIMBP2O15034 1052 aa12.92□□□□□ -0.34
NEDD9-210ENST00000505589 MMP14P50281 582 aa12.92□□□□□ -0.34
NEDD9-210ENST00000505589 RPS8P62241 208 aaKnown RBP12.92□□□□□ -0.34
NEDD9-210ENST00000505589 TBC1D10BQ4KMP7 808 aaPredicted RBP12.92□□□□□ -0.34
NEDD9-210ENST00000505589 AGBL3Q8NEM8 1001 aa12.92□□□□□ -0.34
NEDD9-210ENST00000505589 PLBD2Q8NHP8 589 aa12.92□□□□□ -0.34
NEDD9-210ENST00000505589 XAGE3Q8WTP9 111 aa12.92□□□□□ -0.34
NEDD9-210ENST00000505589 ECE2O60344 883 aa12.91□□□□□ -0.34
NEDD9-210ENST00000505589 VIL1P09327 827 aaKnown RBP12.91□□□□□ -0.34
NEDD9-210ENST00000505589 CSRNP1Q96S65 589 aa12.91□□□□□ -0.34
NEDD9-210ENST00000505589 DBNDD1Q9H9R9 158 aa12.91□□□□□ -0.34
NEDD9-210ENST00000505589 DBF4Q9UBU7 674 aaPredicted RBP12.91□□□□□ -0.34
NEDD9-210ENST00000505589 HDAC9Q9UKV0 1011 aa12.91□□□□□ -0.34
NEDD9-210ENST00000505589 SLC10A3P09131 477 aa12.9□□□□□ -0.34
NEDD9-210ENST00000505589 HOXB7P09629 217 aa12.9□□□□□ -0.34
NEDD9-210ENST00000505589 TRIM28Q13263 835 aaKnown RBP12.9□□□□□ -0.34
NEDD9-210ENST00000505589 KIF4BQ2VIQ3 1234 aa12.9□□□□□ -0.34
NEDD9-210ENST00000505589 PRPF38BQ5VTL8 546 aaKnown RBP12.9□□□□□ -0.34
NEDD9-210ENST00000505589 GCC1Q96CN9 775 aa12.9□□□□□ -0.34
NEDD9-210ENST00000505589 HYPKQ9NX55 129 aa12.9□□□□□ -0.34
NEDD9-210ENST00000505589 PODXL2Q9NZ53 605 aa12.9□□□□□ -0.34
NEDD9-210ENST00000505589 ANKIB1Q9P2G1 1089 aa12.9□□□□□ -0.34
NEDD9-210ENST00000505589 KDM3BQ7LBC6 1761 aa12.89□□□□□ -0.35
NEDD9-210ENST00000505589 NF2P35240 595 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms