RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 SUSD4Q5VX71 490 aa10.31□□□□□ -0.76
SF3A1-210ENST00000498259 USPL1Q5W0Q7 1092 aa10.31□□□□□ -0.76
SF3A1-210ENST00000498259 LDHAL6AQ6ZMR3 332 aa10.31□□□□□ -0.76
SF3A1-210ENST00000498259 PTF1AQ7RTS3 328 aa10.31□□□□□ -0.76
SF3A1-210ENST00000498259 C16orf71Q8IYS4 520 aaPredicted RBP10.31□□□□□ -0.76
SF3A1-210ENST00000498259 RUFY2Q8WXA3 655 aa10.31□□□□□ -0.76
SF3A1-210ENST00000498259 NLRP3Q96P20 1036 aa10.31□□□□□ -0.76
SF3A1-210ENST00000498259 MPHOSPH8Q99549 860 aa10.31□□□□□ -0.76
SF3A1-210ENST00000498259 CNNM1Q9NRU3 951 aa10.31□□□□□ -0.76
SF3A1-210ENST00000498259 PA2G4Q9UQ80 394 aaKnown RBP10.31□□□□□ -0.76
SF3A1-210ENST00000498259 SBF2Q86WG5 1849 aa10.3□□□□□ -0.76
SF3A1-210ENST00000498259 LY75O60449 1722 aa10.3□□□□□ -0.76
SF3A1-210ENST00000498259 RTL9Q8NET4 1388 aa10.3□□□□□ -0.76
SF3A1-210ENST00000498259 SASH1O94885 1247 aa10.3□□□□□ -0.76
SF3A1-210ENST00000498259 ITGA6P23229 1130 aa10.3□□□□□ -0.76
SF3A1-210ENST00000498259 SLC10A5Q5PT55 438 aa10.3□□□□□ -0.76
SF3A1-210ENST00000498259 JARID2Q92833 1246 aaPredicted RBP10.3□□□□□ -0.76
SF3A1-210ENST00000498259 EVI5LQ96CN4 794 aa10.3□□□□□ -0.76
SF3A1-210ENST00000498259 TFCP2L1Q9NZI6 479 aa10.3□□□□□ -0.76
SF3A1-210ENST00000498259 UBN2Q6ZU65 1347 aa10.3□□□□□ -0.76
SF3A1-210ENST00000498259 MROH5Q6ZUA9 1318 aa10.3□□□□□ -0.76
SF3A1-210ENST00000498259 SALL3Q9BXA9 1300 aa10.3□□□□□ -0.76
SF3A1-210ENST00000498259 ANKRD36CQ5JPF3 1778 aa10.29□□□□□ -0.76
SF3A1-210ENST00000498259 CARMIL3Q8ND23 1372 aa10.29□□□□□ -0.76
SF3A1-210ENST00000498259 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.29□□□□□ -0.76
SF3A1-210ENST00000498259 EPB41L2O43491 1005 aaKnown RBP10.29□□□□□ -0.76
SF3A1-210ENST00000498259 NTSR2O95665 410 aa10.29□□□□□ -0.76
SF3A1-210ENST00000498259 SDSP20132 328 aa10.29□□□□□ -0.76
SF3A1-210ENST00000498259 KCNQ4P56696 695 aa10.29□□□□□ -0.76
SF3A1-210ENST00000498259 TNNI3KQ59H18 835 aa10.29□□□□□ -0.76
SF3A1-210ENST00000498259 CCDC158Q5M9N0 1113 aa10.29□□□□□ -0.76
SF3A1-210ENST00000498259 GORABQ5T7V8 394 aa10.29□□□□□ -0.76
SF3A1-210ENST00000498259 NUTM1Q86Y26 1132 aa10.29□□□□□ -0.76
SF3A1-210ENST00000498259 CCDC125Q86Z20 511 aa10.29□□□□□ -0.76
SF3A1-210ENST00000498259 NLGN1Q8N2Q7 840 aa10.29□□□□□ -0.76
SF3A1-210ENST00000498259 RILPL2Q969X0 211 aa10.29□□□□□ -0.76
SF3A1-210ENST00000498259 FPGT-TNNI3KV9GXZ4 949 aa10.29□□□□□ -0.76
SF3A1-210ENST00000498259 NUP98P52948 1817 aa10.28□□□□□ -0.76
SF3A1-210ENST00000498259 C4BP0C0L5 1744 aa10.28□□□□□ -0.76
SF3A1-210ENST00000498259 PHF14O94880 888 aa10.28□□□□□ -0.76
SF3A1-210ENST00000498259 GSPT1P15170 499 aaKnown RBP10.28□□□□□ -0.76
SF3A1-210ENST00000498259 MCCP23508 829 aa10.28□□□□□ -0.76
SF3A1-210ENST00000498259 ST5P78524 1137 aa10.28□□□□□ -0.76
SF3A1-210ENST00000498259 TFCP2Q12800 502 aa10.28□□□□□ -0.76
SF3A1-210ENST00000498259 SF3B3Q15393 1217 aaKnown RBP10.28□□□□□ -0.76
SF3A1-210ENST00000498259 METTL24Q5JXM2 366 aa10.28□□□□□ -0.76
SF3A1-210ENST00000498259 NEUROD6Q96NK8 337 aa10.28□□□□□ -0.76
SF3A1-210ENST00000498259 LRRC4BQ9NT99 713 aa10.28□□□□□ -0.76
SF3A1-210ENST00000498259 FAM177BA6PVY3 158 aa10.27□□□□□ -0.77
SF3A1-210ENST00000498259 ATP5JP18859 108 aa10.27□□□□□ -0.77
SF3A1-210ENST00000498259 BAG6P46379 1132 aa10.27□□□□□ -0.77
SF3A1-210ENST00000498259 BECN1Q14457 450 aa10.27□□□□□ -0.77
SF3A1-210ENST00000498259 TBC1D9BQ66K14 1250 aa10.27□□□□□ -0.77
SF3A1-210ENST00000498259 POTEAQ6S8J7 498 aa10.27□□□□□ -0.77
SF3A1-210ENST00000498259 BICDL1Q6ZP65 573 aa10.27□□□□□ -0.77
SF3A1-210ENST00000498259 TBC1D9Q6ZT07 1266 aa10.27□□□□□ -0.77
SF3A1-210ENST00000498259 KIAA1211Q6ZU35 1233 aa10.27□□□□□ -0.77
SF3A1-210ENST00000498259 ANKRD18AQ8IVF6 992 aa10.27□□□□□ -0.77
SF3A1-210ENST00000498259 CNBD1Q8NA66 436 aa10.27□□□□□ -0.77
SF3A1-210ENST00000498259 KLHDC4Q8TBB5 520 aa10.27□□□□□ -0.77
SF3A1-210ENST00000498259 OTUD7AQ8TE49 926 aaPredicted RBP10.27□□□□□ -0.77
SF3A1-210ENST00000498259 EAF2Q96CJ1 260 aaPredicted RBP10.27□□□□□ -0.77
SF3A1-210ENST00000498259 C22orf23Q9BZE7 217 aa10.27□□□□□ -0.77
SF3A1-210ENST00000498259 GREM2Q9H772 168 aa10.27□□□□□ -0.77
SF3A1-210ENST00000498259 BRWD3Q6RI45 1802 aa10.26□□□□□ -0.77
SF3A1-210ENST00000498259 HCLS1P14317 486 aaPredicted RBP10.26□□□□□ -0.77
SF3A1-210ENST00000498259 MFAP1P55081 439 aaKnown RBP10.26□□□□□ -0.77
SF3A1-210ENST00000498259 DDX46Q7L014 1031 aaKnown RBP10.26□□□□□ -0.77
SF3A1-210ENST00000498259 ATG9AQ7Z3C6 839 aa10.26□□□□□ -0.77
SF3A1-210ENST00000498259 PI4K2BQ8TCG2 481 aa10.26□□□□□ -0.77
SF3A1-210ENST00000498259 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.26□□□□□ -0.77
SF3A1-210ENST00000498259 CCDC8Q9H0W5 538 aaPredicted RBP10.26□□□□□ -0.77
SF3A1-210ENST00000498259 DIAPH3Q9NSV4 1193 aa10.26□□□□□ -0.77
SF3A1-210ENST00000498259 RGS17Q9UGC6 210 aaPredicted RBP10.26□□□□□ -0.77
SF3A1-210ENST00000498259 MYH14Q7Z406 1995 aaKnown RBP10.26□□□□□ -0.77
SF3A1-210ENST00000498259 ABCC12Q96J65 1359 aa10.26□□□□□ -0.77
SF3A1-210ENST00000498259 A0A1B0GUL7 405 aa10.25□□□□□ -0.77
SF3A1-210ENST00000498259 PDE8BO95263 885 aa10.25□□□□□ -0.77
SF3A1-210ENST00000498259 IFIT1P09914 478 aaKnown RBP10.25□□□□□ -0.77
SF3A1-210ENST00000498259 SLC5A1P13866 664 aa10.25□□□□□ -0.77
SF3A1-210ENST00000498259 PUM3Q15397 648 aaKnown RBP10.25□□□□□ -0.77
SF3A1-210ENST00000498259 ATP2B3Q16720 1220 aa10.25□□□□□ -0.77
SF3A1-210ENST00000498259 ERFEQ4G0M1 354 aa10.25□□□□□ -0.77
SF3A1-210ENST00000498259 TBC1D32Q96NH3 1257 aa10.25□□□□□ -0.77
SF3A1-210ENST00000498259 IPO9Q96P70 1041 aaKnown RBP10.25□□□□□ -0.77
SF3A1-210ENST00000498259 ANKRD2Q9GZV1 360 aa10.25□□□□□ -0.77
SF3A1-210ENST00000498259 STK32BQ9NY57 414 aa10.25□□□□□ -0.77
SF3A1-210ENST00000498259 RIPOR2Q9Y4F9 1068 aa10.25□□□□□ -0.77
SF3A1-210ENST00000498259 BCORQ6W2J9 1755 aa10.24□□□□□ -0.77
SF3A1-210ENST00000498259 UQCRFS1P1P0C7P4 283 aa10.24□□□□□ -0.77
SF3A1-210ENST00000498259 TTF1Q15361 905 aaPredicted RBP10.24□□□□□ -0.77
SF3A1-210ENST00000498259 LRRC24Q50LG9 513 aa10.24□□□□□ -0.77
SF3A1-210ENST00000498259 TTC39AQ5SRH9 613 aa10.24□□□□□ -0.77
SF3A1-210ENST00000498259 LPIN2Q92539 896 aa10.24□□□□□ -0.77
SF3A1-210ENST00000498259 RPGRQ92834 1020 aaKnown RBP10.24□□□□□ -0.77
SF3A1-210ENST00000498259 ZNF594Q96JF6 807 aaPredicted RBP10.24□□□□□ -0.77
SF3A1-210ENST00000498259 CCDC85AQ96PX6 553 aaPredicted RBP10.24□□□□□ -0.77
SF3A1-210ENST00000498259 TMX4Q9H1E5 349 aaPredicted RBP10.24□□□□□ -0.77
SF3A1-210ENST00000498259 BCL2L12Q9HB09 334 aa10.24□□□□□ -0.77
SF3A1-210ENST00000498259 BSDC1Q9NW68 430 aaPredicted RBP10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms