RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 LRRC24Q50LG9 513 aa15.89■□□□□ 0.13
GPC1-209ENST00000495100 CCDC73Q6ZRK6 1079 aa15.89■□□□□ 0.13
GPC1-209ENST00000495100 DDX21Q9NR30 783 aaKnown RBP eCLIP15.89■□□□□ 0.13
GPC1-209ENST00000495100 CNNM1Q9NRU3 951 aa15.89■□□□□ 0.13
GPC1-209ENST00000495100 DBNLQ9UJU6 430 aaKnown RBP15.89■□□□□ 0.13
GPC1-209ENST00000495100 MTMR6Q9Y217 621 aa15.89■□□□□ 0.13
GPC1-209ENST00000495100 PTPRUQ92729 1446 aa15.89■□□□□ 0.13
GPC1-209ENST00000495100 IGKV5-2P06315 115 aa15.89■□□□□ 0.13
GPC1-209ENST00000495100 RALYLQ86SE5 291 aaKnown RBP15.89■□□□□ 0.13
GPC1-209ENST00000495100 CHMP4AQ9BY43 222 aa15.88■□□□□ 0.13
GPC1-209ENST00000495100 CEP126Q9P2H0 1117 aa15.88■□□□□ 0.13
GPC1-209ENST00000495100 NRBP1Q9UHY1 535 aa15.88■□□□□ 0.13
GPC1-209ENST00000495100 SMC2O95347 1197 aa15.88■□□□□ 0.13
GPC1-209ENST00000495100 CYP2E1P05181 493 aaPredicted RBP15.88■□□□□ 0.13
GPC1-209ENST00000495100 GCKRQ14397 625 aa15.88■□□□□ 0.13
GPC1-209ENST00000495100 TPD52L1Q16890 204 aaPredicted RBP15.88■□□□□ 0.13
GPC1-209ENST00000495100 ZMYND15Q9H091 742 aa15.88■□□□□ 0.13
GPC1-209ENST00000495100 TMEM131LA2VDJ0 1609 aa15.87■□□□□ 0.13
GPC1-209ENST00000495100 MARCKSP29966 332 aaPredicted RBP15.87■□□□□ 0.13
GPC1-209ENST00000495100 ZNF165P49910 485 aa15.87■□□□□ 0.13
GPC1-209ENST00000495100 NEURL1BA8MQ27 555 aa15.87■□□□□ 0.13
GPC1-209ENST00000495100 HTATSF1O43719 755 aaKnown RBP15.87■□□□□ 0.13
GPC1-209ENST00000495100 OFD1O75665 1012 aa15.87■□□□□ 0.13
GPC1-209ENST00000495100 NOLC1Q14978 699 aaKnown RBP eCLIP15.87■□□□□ 0.13
GPC1-209ENST00000495100 IFNL2Q8IZJ0 200 aa15.87■□□□□ 0.13
GPC1-209ENST00000495100 STAP2Q9UGK3 403 aa15.87■□□□□ 0.13
GPC1-209ENST00000495100 KINO60870 393 aaKnown RBP15.86■□□□□ 0.13
GPC1-209ENST00000495100 SNRPA1P09661 255 aaKnown RBP15.86■□□□□ 0.13
GPC1-209ENST00000495100 BICDL1Q6ZP65 573 aa15.86■□□□□ 0.13
GPC1-209ENST00000495100 NOL7Q9UMY1 257 aaKnown RBP15.86■□□□□ 0.13
GPC1-209ENST00000495100 TBC1D2BQ9UPU7 963 aa15.86■□□□□ 0.13
GPC1-209ENST00000495100 GOLGA6L6A8MZA4 724 aa15.86■□□□□ 0.13
GPC1-209ENST00000495100 PDCP20941 246 aa15.86■□□□□ 0.13
GPC1-209ENST00000495100 STK38Q15208 465 aa15.86■□□□□ 0.13
GPC1-209ENST00000495100 INTS4Q96HW7 963 aaKnown RBP15.86■□□□□ 0.13
GPC1-209ENST00000495100 ADGRB2O60241 1585 aa15.86■□□□□ 0.13
GPC1-209ENST00000495100 NR1I2O75469 434 aa15.86■□□□□ 0.13
GPC1-209ENST00000495100 CCAR2Q8N163 923 aaKnown RBP15.86■□□□□ 0.13
GPC1-209ENST00000495100 PPP1R9BQ96SB3 815 aa15.85■□□□□ 0.13
GPC1-209ENST00000495100 MYL10Q9BUA6 226 aa15.85■□□□□ 0.13
GPC1-209ENST00000495100 CUL4AQ13619 759 aa15.85■□□□□ 0.13
GPC1-209ENST00000495100 TNNI3KQ59H18 835 aa15.85■□□□□ 0.13
GPC1-209ENST00000495100 MICU3Q86XE3 530 aa15.85■□□□□ 0.13
GPC1-209ENST00000495100 ZSCAN31Q96LW9 406 aaPredicted RBP15.85■□□□□ 0.13
GPC1-209ENST00000495100 FPGT-TNNI3KV9GXZ4 949 aa15.85■□□□□ 0.13
GPC1-209ENST00000495100 TPM2P07951 284 aa15.85■□□□□ 0.13
GPC1-209ENST00000495100 TYRO3Q06418 890 aa15.85■□□□□ 0.13
GPC1-209ENST00000495100 ADCY9O60503 1353 aa15.84■□□□□ 0.13
GPC1-209ENST00000495100 A0A1B0GVL5 298 aa15.84■□□□□ 0.13
GPC1-209ENST00000495100 GTF2E1P29083 439 aaPredicted RBP15.84■□□□□ 0.13
GPC1-209ENST00000495100 ZHX1Q9UKY1 873 aaPredicted RBP15.84■□□□□ 0.13
GPC1-209ENST00000495100 JAG2Q9Y219 1238 aa15.84■□□□□ 0.13
GPC1-209ENST00000495100 RIMS1Q86UR5 1692 aaKnown RBP15.84■□□□□ 0.13
GPC1-209ENST00000495100 ADAMTS13Q76LX8 1427 aa15.84■□□□□ 0.13
GPC1-209ENST00000495100 METTL24Q5JXM2 366 aa15.84■□□□□ 0.13
GPC1-209ENST00000495100 SYNE3Q6ZMZ3 975 aa15.84■□□□□ 0.13
GPC1-209ENST00000495100 PREX1Q8TCU6 1659 aa15.84■□□□□ 0.13
GPC1-209ENST00000495100 NUP133Q8WUM0 1156 aa15.84■□□□□ 0.13
GPC1-209ENST00000495100 CCAR1Q8IX12 1150 aaKnown RBP15.83■□□□□ 0.12
GPC1-209ENST00000495100 CCDC24Q8N4L8 307 aa15.83■□□□□ 0.12
GPC1-209ENST00000495100 FSIP1Q8NA03 581 aa15.83■□□□□ 0.12
GPC1-209ENST00000495100 ZKSCAN3Q9BRR0 538 aa15.83■□□□□ 0.12
GPC1-209ENST00000495100 PYCARDQ9ULZ3 195 aa15.83■□□□□ 0.12
GPC1-209ENST00000495100 ALDH1L1O75891 902 aa15.83■□□□□ 0.12
GPC1-209ENST00000495100 SPECC1Q5M775 1068 aa15.83■□□□□ 0.12
GPC1-209ENST00000495100 ARHGEF25Q86VW2 580 aa15.83■□□□□ 0.12
GPC1-209ENST00000495100 SH2B1Q9NRF2 756 aaPredicted RBP15.83■□□□□ 0.12
GPC1-209ENST00000495100 ABCF2Q9UG63 623 aa15.83■□□□□ 0.12
GPC1-209ENST00000495100 TRDNQ13061 729 aa15.82■□□□□ 0.12
GPC1-209ENST00000495100 POLA2Q14181 598 aa15.82■□□□□ 0.12
GPC1-209ENST00000495100 PDILTQ8N807 584 aa15.82■□□□□ 0.12
GPC1-209ENST00000495100 GOLGA8BA8MQT2 603 aa15.82■□□□□ 0.12
GPC1-209ENST00000495100 CCDC158Q5M9N0 1113 aa15.82■□□□□ 0.12
GPC1-209ENST00000495100 SLC52A2Q9HAB3 445 aa15.82■□□□□ 0.12
GPC1-209ENST00000495100 NCOA3Q9Y6Q9 1424 aa15.82■□□□□ 0.12
GPC1-209ENST00000495100 CFAP74Q9C0B2 1584 aa15.82■□□□□ 0.12
GPC1-209ENST00000495100 HIP1O00291 1037 aa15.82■□□□□ 0.12
GPC1-209ENST00000495100 RRP9O43818 475 aaKnown RBP15.82■□□□□ 0.12
GPC1-209ENST00000495100 CYP21A2P08686 494 aa15.82■□□□□ 0.12
GPC1-209ENST00000495100 RPS6KB1P23443 525 aa15.82■□□□□ 0.12
GPC1-209ENST00000495100 ADORA1P30542 326 aa15.82■□□□□ 0.12
GPC1-209ENST00000495100 CMTR1Q8N1G2 835 aaKnown RBP15.82■□□□□ 0.12
GPC1-209ENST00000495100 PAG1Q9NWQ8 432 aa15.82■□□□□ 0.12
GPC1-209ENST00000495100 CLIP2Q9UDT6 1046 aa15.82■□□□□ 0.12
GPC1-209ENST00000495100 OVOS2A0A0J9YW53 1432 aa15.82■□□□□ 0.12
GPC1-209ENST00000495100 OVOS2Q6IE36 1432 aa15.82■□□□□ 0.12
GPC1-209ENST00000495100 TTC41PQ6P2S7 1318 aa15.82■□□□□ 0.12
GPC1-209ENST00000495100 NUTM2BA6NNL0 878 aaPredicted RBP15.81■□□□□ 0.12
GPC1-209ENST00000495100 NUTM2EB1AL46 878 aaPredicted RBP15.81■□□□□ 0.12
GPC1-209ENST00000495100 ARID5BQ14865 1188 aa15.81■□□□□ 0.12
GPC1-209ENST00000495100 LDHAL6AQ6ZMR3 332 aa15.81■□□□□ 0.12
GPC1-209ENST00000495100 NUTM2AQ8IVF1 878 aaPredicted RBP15.81■□□□□ 0.12
GPC1-209ENST00000495100 ACSBG1Q96GR2 724 aa15.81■□□□□ 0.12
GPC1-209ENST00000495100 KAZALD1Q96I82 304 aa15.81■□□□□ 0.12
GPC1-209ENST00000495100 INCENPQ9NQS7 918 aa15.81■□□□□ 0.12
GPC1-209ENST00000495100 GOLGB1Q14789 3259 aaKnown RBP15.81■□□□□ 0.12
GPC1-209ENST00000495100 A0A1B0GUL7 405 aa15.81■□□□□ 0.12
GPC1-209ENST00000495100 PTPDC1A2A3K4 754 aa15.81■□□□□ 0.12
GPC1-209ENST00000495100 HOMER1Q86YM7 354 aa15.81■□□□□ 0.12
GPC1-209ENST00000495100 PES1O00541 588 aaKnown RBP15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms