RNA–Protein interactions for RNA: ENST00000494334.1

COL1A1-208, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 396 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-208ENST00000494334 ARFGEF1Q9Y6D6 1849 aa17.12■□□□□ 0.33
COL1A1-208ENST00000494334 PPEF1O14829 653 aaPredicted RBP17.12■□□□□ 0.33
COL1A1-208ENST00000494334 BBOX1O75936 387 aa17.12■□□□□ 0.33
COL1A1-208ENST00000494334 NBPF7P0C2Y1 421 aaPredicted RBP17.12■□□□□ 0.33
COL1A1-208ENST00000494334 TRIM27P14373 513 aa17.12■□□□□ 0.33
COL1A1-208ENST00000494334 CCDC152Q4G0S7 254 aa17.12■□□□□ 0.33
COL1A1-208ENST00000494334 SOGA3Q5TF21 947 aa17.12■□□□□ 0.33
COL1A1-208ENST00000494334 CELF1Q92879 486 aaKnown RBP17.12■□□□□ 0.33
COL1A1-208ENST00000494334 SEC31BQ9NQW1 1179 aa17.12■□□□□ 0.33
COL1A1-208ENST00000494334 TNNQ9UQP3 1299 aa17.12■□□□□ 0.33
COL1A1-208ENST00000494334 NFKBIEO00221 500 aa17.11■□□□□ 0.33
COL1A1-208ENST00000494334 CCT4P50991 539 aaKnown RBP17.11■□□□□ 0.33
COL1A1-208ENST00000494334 CCDC93Q567U6 631 aa17.11■□□□□ 0.33
COL1A1-208ENST00000494334 ZKSCAN2Q63HK3 967 aa17.11■□□□□ 0.33
COL1A1-208ENST00000494334 SLC51AQ86UW1 340 aa17.11■□□□□ 0.33
COL1A1-208ENST00000494334 USP44Q9H0E7 712 aa17.11■□□□□ 0.33
COL1A1-208ENST00000494334 UTYO14607 1347 aa17.11■□□□□ 0.33
COL1A1-208ENST00000494334 LAMB2P55268 1798 aa17.1■□□□□ 0.33
COL1A1-208ENST00000494334 CSF1RP07333 972 aa17.1■□□□□ 0.33
COL1A1-208ENST00000494334 FOXO4P98177 505 aa17.1■□□□□ 0.33
COL1A1-208ENST00000494334 RASSF7Q02833 373 aa17.1■□□□□ 0.33
COL1A1-208ENST00000494334 GREM2Q9H772 168 aa17.1■□□□□ 0.33
COL1A1-208ENST00000494334 ATP6V0A2Q9Y487 856 aa17.1■□□□□ 0.33
COL1A1-208ENST00000494334 PRELPP51888 382 aa17.09■□□□□ 0.33
COL1A1-208ENST00000494334 RPS8P62241 208 aaKnown RBP17.09■□□□□ 0.33
COL1A1-208ENST00000494334 EPHA10Q5JZY3 1008 aa17.09■□□□□ 0.33
COL1A1-208ENST00000494334 INTS3Q68E01 1043 aaKnown RBP17.09■□□□□ 0.33
COL1A1-208ENST00000494334 CC2D2BQ6DHV5 1058 aa17.09■□□□□ 0.33
COL1A1-208ENST00000494334 SP8Q8IXZ3 490 aa17.09■□□□□ 0.33
COL1A1-208ENST00000494334 RTKN2Q8IZC4 609 aa17.09■□□□□ 0.33
COL1A1-208ENST00000494334 CLUAP1Q96AJ1 413 aa17.09■□□□□ 0.33
COL1A1-208ENST00000494334 KAZALD1Q96I82 304 aa17.09■□□□□ 0.33
COL1A1-208ENST00000494334 SUCLG2Q96I99 432 aa17.09■□□□□ 0.33
COL1A1-208ENST00000494334 RCAN3Q9UKA8 241 aa17.09■□□□□ 0.33
COL1A1-208ENST00000494334 YY1P25490 414 aa17.07■□□□□ 0.32
COL1A1-208ENST00000494334 C9orf131Q5VYM1 1079 aa17.07■□□□□ 0.32
COL1A1-208ENST00000494334 TMC4Q7Z404 712 aa17.07■□□□□ 0.32
COL1A1-208ENST00000494334 TAOK3Q9H2K8 898 aa17.07■□□□□ 0.32
COL1A1-208ENST00000494334 SNED1Q8TER0 1413 aa17.06■□□□□ 0.32
COL1A1-208ENST00000494334 RTL9Q8NET4 1388 aa17.06■□□□□ 0.32
COL1A1-208ENST00000494334 CACNA1SQ13698 1873 aa17.06■□□□□ 0.32
COL1A1-208ENST00000494334 LTBP3Q9NS15 1303 aa17.06■□□□□ 0.32
COL1A1-208ENST00000494334 ITGA6P23229 1130 aa17.06■□□□□ 0.32
COL1A1-208ENST00000494334 FKBP4Q02790 459 aaKnown RBP eCLIP17.06■□□□□ 0.32
COL1A1-208ENST00000494334 FAM161AQ3B820 660 aa17.06■□□□□ 0.32
COL1A1-208ENST00000494334 GRIPAP1Q4V328 841 aa17.06■□□□□ 0.32
COL1A1-208ENST00000494334 LMBR1LQ6UX01 489 aa17.06■□□□□ 0.32
COL1A1-208ENST00000494334 TMX4Q9H1E5 349 aaPredicted RBP17.06■□□□□ 0.32
COL1A1-208ENST00000494334 COL4A1P02462 1669 aa17.06■□□□□ 0.32
COL1A1-208ENST00000494334 LMNB1P20700 586 aa17.05■□□□□ 0.32
COL1A1-208ENST00000494334 ANKRD18AQ8IVF6 992 aa17.05■□□□□ 0.32
COL1A1-208ENST00000494334 TMEM57Q8N5G2 664 aa17.05■□□□□ 0.32
COL1A1-208ENST00000494334 CDC5LQ99459 802 aaKnown RBP17.05■□□□□ 0.32
COL1A1-208ENST00000494334 PSMD1Q99460 953 aa17.05■□□□□ 0.32
COL1A1-208ENST00000494334 RNF181Q9P0P0 153 aa17.05■□□□□ 0.32
COL1A1-208ENST00000494334 TAF1P21675 1872 aa17.04■□□□□ 0.32
COL1A1-208ENST00000494334 DZIP1LQ8IYY4 767 aaKnown RBP17.04■□□□□ 0.32
COL1A1-208ENST00000494334 MEIS3Q99687 375 aa17.04■□□□□ 0.32
COL1A1-208ENST00000494334 BICC1Q9H694 974 aaKnown RBP17.04■□□□□ 0.32
COL1A1-208ENST00000494334 CHMP3Q9Y3E7 222 aa17.04■□□□□ 0.32
COL1A1-208ENST00000494334 ANKRD18BA2A2Z9 1011 aa17.03■□□□□ 0.32
COL1A1-208ENST00000494334 UBTFL1P0CB47 393 aaPredicted RBP17.03■□□□□ 0.32
COL1A1-208ENST00000494334 RLBP1P12271 317 aa17.03■□□□□ 0.32
COL1A1-208ENST00000494334 RABL6Q3YEC7 729 aaPredicted RBP17.03■□□□□ 0.32
COL1A1-208ENST00000494334 FTSJ3Q8IY81 847 aaKnown RBP17.03■□□□□ 0.32
COL1A1-208ENST00000494334 MPNDQ8N594 471 aa17.03■□□□□ 0.32
COL1A1-208ENST00000494334 ANKRD44Q8N8A2 993 aa17.03■□□□□ 0.32
COL1A1-208ENST00000494334 ZNF277Q9NRM2 450 aaPredicted RBP17.03■□□□□ 0.32
COL1A1-208ENST00000494334 CHD4Q14839 1912 aa17.03■□□□□ 0.32
COL1A1-208ENST00000494334 FER1L6Q2WGJ9 1857 aa17.03■□□□□ 0.32
COL1A1-208ENST00000494334 PLIN1O60240 522 aa17.02■□□□□ 0.32
COL1A1-208ENST00000494334 IFIT5Q13325 482 aaKnown RBP17.02■□□□□ 0.32
COL1A1-208ENST00000494334 DPP8Q6V1X1 898 aaPredicted RBP17.02■□□□□ 0.32
COL1A1-208ENST00000494334 RTFDC1Q9BY42 306 aaPredicted RBP17.02■□□□□ 0.32
COL1A1-208ENST00000494334 BSDC1Q9NW68 430 aaPredicted RBP17.02■□□□□ 0.32
COL1A1-208ENST00000494334 NSFL1CQ9UNZ2 370 aaKnown RBP17.02■□□□□ 0.32
COL1A1-208ENST00000494334 IGHMBP2P38935 993 aaKnown RBP17.01■□□□□ 0.31
COL1A1-208ENST00000494334 GPSM2P81274 684 aa17.01■□□□□ 0.31
COL1A1-208ENST00000494334 CCDC57Q2TAC2 916 aa17.01■□□□□ 0.31
COL1A1-208ENST00000494334 GNAI3P08754 354 aa17■□□□□ 0.31
COL1A1-208ENST00000494334 IARSP41252 1262 aaKnown RBP17■□□□□ 0.31
COL1A1-208ENST00000494334 PANK1Q8TE04 598 aa17■□□□□ 0.31
COL1A1-208ENST00000494334 ZNF594Q96JF6 807 aaPredicted RBP17■□□□□ 0.31
COL1A1-208ENST00000494334 MPHOSPH8Q99549 860 aa17■□□□□ 0.31
COL1A1-208ENST00000494334 MINPP1Q9UNW1 487 aa17■□□□□ 0.31
COL1A1-208ENST00000494334 MYH3P11055 1940 aa17■□□□□ 0.31
COL1A1-208ENST00000494334 ITPRIPQ8IWB1 547 aa16.99■□□□□ 0.31
COL1A1-208ENST00000494334 SUPT20HQ8NEM7 779 aa16.99■□□□□ 0.31
COL1A1-208ENST00000494334 PODXL2Q9NZ53 605 aa16.99■□□□□ 0.31
COL1A1-208ENST00000494334 POLLQ9UGP5 575 aa16.99■□□□□ 0.31
COL1A1-208ENST00000494334 HDAC5Q9UQL6 1122 aa16.99■□□□□ 0.31
COL1A1-208ENST00000494334 LRRFIP2Q9Y608 721 aaKnown RBP16.99■□□□□ 0.31
COL1A1-208ENST00000494334 SBF1O95248 1867 aa16.99■□□□□ 0.31
COL1A1-208ENST00000494334 MS4A1P11836 297 aa16.98■□□□□ 0.31
COL1A1-208ENST00000494334 VPS33BQ9H267 617 aa16.98■□□□□ 0.31
COL1A1-208ENST00000494334 ANKIB1Q9P2G1 1089 aa16.98■□□□□ 0.31
COL1A1-208ENST00000494334 ZBTB7BO15156 539 aaPredicted RBP16.97■□□□□ 0.31
COL1A1-208ENST00000494334 AOC3Q16853 763 aa16.97■□□□□ 0.31
COL1A1-208ENST00000494334 TAF7LQ5H9L4 462 aa16.97■□□□□ 0.31
COL1A1-208ENST00000494334 ZNF784Q8NCA9 323 aaPredicted RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms