RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 HEG1Q9ULI3 1381 aa8.86□□□□□ -0.99
VPS52-219ENST00000493379 UBR3Q6ZT12 1888 aa8.85□□□□□ -0.99
VPS52-219ENST00000493379 ZNF831Q5JPB2 1677 aa8.85□□□□□ -0.99
VPS52-219ENST00000493379 RASSF10A6NK89 507 aa8.85□□□□□ -0.99
VPS52-219ENST00000493379 NUDT7P0C024 238 aa8.85□□□□□ -0.99
VPS52-219ENST00000493379 HOXB3P14651 431 aaPredicted RBP8.85□□□□□ -0.99
VPS52-219ENST00000493379 RIPK4P57078 832 aa8.85□□□□□ -0.99
VPS52-219ENST00000493379 TGFB2P61812 414 aa8.85□□□□□ -0.99
VPS52-219ENST00000493379 LMOD3Q0VAK6 560 aa8.85□□□□□ -0.99
VPS52-219ENST00000493379 TAF7Q15545 349 aaPredicted RBP8.85□□□□□ -0.99
VPS52-219ENST00000493379 DOK7Q18PE1 504 aa8.85□□□□□ -0.99
VPS52-219ENST00000493379 DIEXFQ68CQ4 756 aaKnown RBP8.85□□□□□ -0.99
VPS52-219ENST00000493379 ZNF790Q6PG37 636 aa8.85□□□□□ -0.99
VPS52-219ENST00000493379 ZNF454Q8N9F8 522 aa8.85□□□□□ -0.99
VPS52-219ENST00000493379 BEGAINQ9BUH8 593 aa8.85□□□□□ -0.99
VPS52-219ENST00000493379 MAPK8IP3Q9UPT6 1336 aa8.84□□□□□ -0.99
VPS52-219ENST00000493379 SCN11AQ9UI33 1791 aa8.84□□□□□ -0.99
VPS52-219ENST00000493379 OATP04181 439 aa8.84□□□□□ -0.99
VPS52-219ENST00000493379 MMP10P09238 476 aa8.84□□□□□ -0.99
VPS52-219ENST00000493379 ZNF853P0CG23 659 aa8.84□□□□□ -0.99
VPS52-219ENST00000493379 ARSIQ5FYB1 569 aa8.84□□□□□ -0.99
VPS52-219ENST00000493379 PADI6Q6TGC4 694 aa8.84□□□□□ -0.99
VPS52-219ENST00000493379 MCM10Q7L590 875 aa8.84□□□□□ -0.99
VPS52-219ENST00000493379 METTL3Q86U44 580 aaKnown RBP8.84□□□□□ -0.99
VPS52-219ENST00000493379 NBPF15Q8N660 670 aa8.84□□□□□ -0.99
VPS52-219ENST00000493379 RTF1Q92541 710 aaKnown RBP8.84□□□□□ -0.99
VPS52-219ENST00000493379 KHSRPQ92945 711 aaKnown RBP eCLIP8.84□□□□□ -0.99
VPS52-219ENST00000493379 ZMYND15Q9H091 742 aa8.84□□□□□ -0.99
VPS52-219ENST00000493379 ITGB4P16144 1822 aa8.84□□□□□ -0.99
VPS52-219ENST00000493379 CHL1O00533 1208 aa8.83□□□□□ -1
VPS52-219ENST00000493379 APAF1O14727 1248 aa8.83□□□□□ -1
VPS52-219ENST00000493379 TEFQ10587 303 aa8.83□□□□□ -1
VPS52-219ENST00000493379 ITPK1Q13572 414 aa8.83□□□□□ -1
VPS52-219ENST00000493379 DCTN1Q14203 1278 aa8.83□□□□□ -1
VPS52-219ENST00000493379 TTC13Q8NBP0 860 aa8.83□□□□□ -1
VPS52-219ENST00000493379 FLAD1Q8NFF5 587 aa8.83□□□□□ -1
VPS52-219ENST00000493379 ZSWIM6Q9HCJ5 1215 aa8.83□□□□□ -1
VPS52-219ENST00000493379 RBM27Q9P2N5 1060 aaKnown RBP8.83□□□□□ -1
VPS52-219ENST00000493379 MKI67P46013 3256 aaKnown RBP8.83□□□□□ -1
VPS52-219ENST00000493379 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.82□□□□□ -1
VPS52-219ENST00000493379 BTBD11A6QL63 1104 aa8.82□□□□□ -1
VPS52-219ENST00000493379 ITGBL1O95965 494 aaPredicted RBP8.82□□□□□ -1
VPS52-219ENST00000493379 SSTR3P32745 418 aaPredicted RBP8.82□□□□□ -1
VPS52-219ENST00000493379 ATP6V1AP38606 617 aa8.82□□□□□ -1
VPS52-219ENST00000493379 SLC39A6Q13433 755 aa8.82□□□□□ -1
VPS52-219ENST00000493379 CYP4F22Q6NT55 531 aa8.82□□□□□ -1
VPS52-219ENST00000493379 GPR153Q6NV75 609 aa8.82□□□□□ -1
VPS52-219ENST00000493379 CCDC146Q8IYE0 955 aa8.82□□□□□ -1
VPS52-219ENST00000493379 ZNF496Q96IT1 587 aaPredicted RBP8.82□□□□□ -1
VPS52-219ENST00000493379 TEX13AQ9BXU3 409 aaPredicted RBP8.82□□□□□ -1
VPS52-219ENST00000493379 ADAM33Q9BZ11 813 aa8.82□□□□□ -1
VPS52-219ENST00000493379 ADGRG1Q9Y653 693 aa8.82□□□□□ -1
VPS52-219ENST00000493379 C4BP0C0L5 1744 aa8.82□□□□□ -1
VPS52-219ENST00000493379 CNTNAP4Q9C0A0 1308 aa8.81□□□□□ -1
VPS52-219ENST00000493379 POTEB2H3BUK9 544 aa8.81□□□□□ -1
VPS52-219ENST00000493379 AOC2O75106 756 aa8.81□□□□□ -1
VPS52-219ENST00000493379 CYP19A1P11511 503 aaPredicted RBP8.81□□□□□ -1
VPS52-219ENST00000493379 EIF4A1P60842 406 aaKnown RBP8.81□□□□□ -1
VPS52-219ENST00000493379 SH3D19Q5HYK7 790 aa8.81□□□□□ -1
VPS52-219ENST00000493379 LINC00116Q8NCU8 138 aa8.81□□□□□ -1
VPS52-219ENST00000493379 PXYLP1Q8TE99 480 aa8.81□□□□□ -1
VPS52-219ENST00000493379 ABT1Q9ULW3 272 aaKnown RBP8.81□□□□□ -1
VPS52-219ENST00000493379 RIMBP2O15034 1052 aa8.8□□□□□ -1
VPS52-219ENST00000493379 KCNQ3O43525 872 aa8.8□□□□□ -1
VPS52-219ENST00000493379 PTCD1O75127 700 aaKnown RBP8.8□□□□□ -1
VPS52-219ENST00000493379 RPS6KA4O75676 772 aa8.8□□□□□ -1
VPS52-219ENST00000493379 DALRD3Q5D0E6 543 aaKnown RBP8.8□□□□□ -1
VPS52-219ENST00000493379 INTS5Q6P9B9 1019 aaKnown RBP8.8□□□□□ -1
VPS52-219ENST00000493379 WWC1Q8IX03 1113 aa8.8□□□□□ -1
VPS52-219ENST00000493379 CAPNS2Q96L46 248 aa8.8□□□□□ -1
VPS52-219ENST00000493379 PCMTD1Q96MG8 357 aaPredicted RBP8.8□□□□□ -1
VPS52-219ENST00000493379 GPR101Q96P66 508 aaPredicted RBP8.8□□□□□ -1
VPS52-219ENST00000493379 FMNL2Q96PY5 1086 aa8.8□□□□□ -1
VPS52-219ENST00000493379 FAM217BQ9NTX9 383 aaPredicted RBP8.8□□□□□ -1
VPS52-219ENST00000493379 PIM2Q9P1W9 311 aa8.8□□□□□ -1
VPS52-219ENST00000493379 SIPA1L3O60292 1781 aaPredicted RBP8.8□□□□□ -1
VPS52-219ENST00000493379 IL16Q14005 1332 aa8.8□□□□□ -1
VPS52-219ENST00000493379 ZNF521Q96K83 1311 aa8.8□□□□□ -1
VPS52-219ENST00000493379 ZC3H4Q9UPT8 1303 aaKnown RBP8.8□□□□□ -1
VPS52-219ENST00000493379 SNRPA1P09661 255 aaKnown RBP8.79□□□□□ -1
VPS52-219ENST00000493379 SSFA2P28290 1259 aa8.79□□□□□ -1
VPS52-219ENST00000493379 PRSS12P56730 875 aa8.79□□□□□ -1
VPS52-219ENST00000493379 WDR63Q8IWG1 891 aa8.79□□□□□ -1
VPS52-219ENST00000493379 TTC5Q8N0Z6 440 aa8.79□□□□□ -1
VPS52-219ENST00000493379 NLRP7Q8WX94 980 aa8.79□□□□□ -1
VPS52-219ENST00000493379 THUMPD2Q9BTF0 503 aaKnown RBP8.79□□□□□ -1
VPS52-219ENST00000493379 LMNB1P20700 586 aa8.78□□□□□ -1
VPS52-219ENST00000493379 CHRNA5P30532 468 aa8.78□□□□□ -1
VPS52-219ENST00000493379 CRKLP46109 303 aaKnown RBP8.78□□□□□ -1
VPS52-219ENST00000493379 EIF5P55010 431 aaKnown RBP8.78□□□□□ -1
VPS52-219ENST00000493379 CALD1Q05682 793 aaKnown RBP8.78□□□□□ -1
VPS52-219ENST00000493379 FLIIQ13045 1269 aa8.78□□□□□ -1
VPS52-219ENST00000493379 DNAJC10Q8IXB1 793 aa8.78□□□□□ -1
VPS52-219ENST00000493379 IFT57Q9NWB7 429 aa8.78□□□□□ -1
VPS52-219ENST00000493379 RRP7AQ9Y3A4 280 aaKnown RBP8.78□□□□□ -1
VPS52-219ENST00000493379 USP16Q9Y5T5 823 aa8.78□□□□□ -1
VPS52-219ENST00000493379 UBR2Q8IWV8 1755 aa8.77□□□□□ -1.01
VPS52-219ENST00000493379 STARD3NLO95772 234 aa8.77□□□□□ -1.01
VPS52-219ENST00000493379 HOXB7P09629 217 aa8.77□□□□□ -1.01
VPS52-219ENST00000493379 FMR1Q06787 632 aaKnown RBP eCLIP8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms