RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 INPP5BP32019 993 aa4.05□□□□□ -1.76
HMGB1-208ENST00000490788 CCINQ13939 588 aa4.05□□□□□ -1.76
HMGB1-208ENST00000490788 LINC00114Q6XXX2 140 aa4.05□□□□□ -1.76
HMGB1-208ENST00000490788 SLCO4C1Q6ZQN7 724 aa4.05□□□□□ -1.76
HMGB1-208ENST00000490788 RAB44Q7Z6P3 723 aaPredicted RBP4.05□□□□□ -1.76
HMGB1-208ENST00000490788 NBPF11Q86T75 865 aa4.05□□□□□ -1.76
HMGB1-208ENST00000490788 UBE2OQ9C0C9 1292 aaKnown RBP4.05□□□□□ -1.76
HMGB1-208ENST00000490788 SAP130Q9H0E3 1048 aa4.05□□□□□ -1.76
HMGB1-208ENST00000490788 ZFP64Q9NPA5 681 aa4.05□□□□□ -1.76
HMGB1-208ENST00000490788 BCS1LQ9Y276 419 aa4.05□□□□□ -1.76
HMGB1-208ENST00000490788 FNDC3AQ9Y2H6 1198 aaKnown RBP4.05□□□□□ -1.76
HMGB1-208ENST00000490788 SIN3BO75182 1162 aa4.04□□□□□ -1.76
HMGB1-208ENST00000490788 RARAP10276 462 aa4.04□□□□□ -1.76
HMGB1-208ENST00000490788 ZAP70P43403 619 aa4.04□□□□□ -1.76
HMGB1-208ENST00000490788 PCSK7Q16549 785 aa4.04□□□□□ -1.76
HMGB1-208ENST00000490788 ALKBH2Q6NS38 261 aa4.04□□□□□ -1.76
HMGB1-208ENST00000490788 C1orf229Q6ZS94 237 aaPredicted RBP4.04□□□□□ -1.76
HMGB1-208ENST00000490788 CAPN12Q6ZSI9 719 aa4.04□□□□□ -1.76
HMGB1-208ENST00000490788 KRT25Q7Z3Z0 450 aa4.04□□□□□ -1.76
HMGB1-208ENST00000490788 HELQQ8TDG4 1101 aa4.04□□□□□ -1.76
HMGB1-208ENST00000490788 GTF3C2Q8WUA4 911 aaPredicted RBP4.04□□□□□ -1.76
HMGB1-208ENST00000490788 SLC30A3Q99726 388 aa4.04□□□□□ -1.76
HMGB1-208ENST00000490788 C11orf16Q9NQ32 467 aa4.04□□□□□ -1.76
HMGB1-208ENST00000490788 SEPT3Q9UH03 358 aa4.04□□□□□ -1.76
HMGB1-208ENST00000490788 RTCBQ9Y3I0 505 aaKnown RBP4.04□□□□□ -1.76
HMGB1-208ENST00000490788 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.04□□□□□ -1.76
HMGB1-208ENST00000490788 ELOA3CA0A087WX78 387 aaPredicted RBP4.03□□□□□ -1.76
HMGB1-208ENST00000490788 SCO2A0A1W2PP80 73 aa4.03□□□□□ -1.76
HMGB1-208ENST00000490788 ELOA3DA6NLF2 546 aaPredicted RBP4.03□□□□□ -1.76
HMGB1-208ENST00000490788 UBAP1LF5GYI3 381 aa4.03□□□□□ -1.76
HMGB1-208ENST00000490788 GNB5O14775 395 aa4.03□□□□□ -1.76
HMGB1-208ENST00000490788 XYLBO75191 536 aa4.03□□□□□ -1.76
HMGB1-208ENST00000490788 FAM13AO94988 1023 aa4.03□□□□□ -1.76
HMGB1-208ENST00000490788 RPLP1P05386 114 aaKnown RBP4.03□□□□□ -1.76
HMGB1-208ENST00000490788 EPXP11678 715 aa4.03□□□□□ -1.76
HMGB1-208ENST00000490788 HOXB4P17483 251 aaPredicted RBP4.03□□□□□ -1.76
HMGB1-208ENST00000490788 NFKB1P19838 968 aa4.03□□□□□ -1.76
HMGB1-208ENST00000490788 ITGB7P26010 798 aa4.03□□□□□ -1.76
HMGB1-208ENST00000490788 SF3B2Q13435 895 aaKnown RBP4.03□□□□□ -1.76
HMGB1-208ENST00000490788 ELOA3BQ3SY89 546 aa4.03□□□□□ -1.76
HMGB1-208ENST00000490788 NOM1Q5C9Z4 860 aaKnown RBP4.03□□□□□ -1.76
HMGB1-208ENST00000490788 ARTNQ5T4W7 220 aa4.03□□□□□ -1.76
HMGB1-208ENST00000490788 ETFBKMTQ8IXQ9 262 aa4.03□□□□□ -1.76
HMGB1-208ENST00000490788 ELOA3Q8NG57 546 aa4.03□□□□□ -1.76
HMGB1-208ENST00000490788 CCER1Q8TC90 406 aaPredicted RBP4.03□□□□□ -1.76
HMGB1-208ENST00000490788 NOP53Q9NZM5 478 aaKnown RBP4.03□□□□□ -1.76
HMGB1-208ENST00000490788 SLAIN2Q9P270 581 aa4.03□□□□□ -1.76
HMGB1-208ENST00000490788 DMGDHQ9UI17 866 aaKnown RBP4.03□□□□□ -1.76
HMGB1-208ENST00000490788 C1QTNF9BB2RNN3 333 aa4.02□□□□□ -1.77
HMGB1-208ENST00000490788 TNFRSF10BO14763 440 aa4.02□□□□□ -1.77
HMGB1-208ENST00000490788 SASH3O75995 380 aa4.02□□□□□ -1.77
HMGB1-208ENST00000490788 SCNN1AP37088 669 aa4.02□□□□□ -1.77
HMGB1-208ENST00000490788 ADH7P40394 386 aa4.02□□□□□ -1.77
HMGB1-208ENST00000490788 FKBP4Q02790 459 aaKnown RBP eCLIP4.02□□□□□ -1.77
HMGB1-208ENST00000490788 GRIN2CQ14957 1233 aa4.02□□□□□ -1.77
HMGB1-208ENST00000490788 CHSY3Q70JA7 882 aa4.02□□□□□ -1.77
HMGB1-208ENST00000490788 FCHSD1Q86WN1 690 aa4.02□□□□□ -1.77
HMGB1-208ENST00000490788 GLYCTKQ8IVS8 523 aa4.02□□□□□ -1.77
HMGB1-208ENST00000490788 GPR152Q8TDT2 470 aa4.02□□□□□ -1.77
HMGB1-208ENST00000490788 BTBD6Q96KE9 485 aa4.02□□□□□ -1.77
HMGB1-208ENST00000490788 GSX2Q9BZM3 304 aa4.02□□□□□ -1.77
HMGB1-208ENST00000490788 USP20Q9Y2K6 914 aa4.02□□□□□ -1.77
HMGB1-208ENST00000490788 OPLAHO14841 1288 aa4.01□□□□□ -1.77
HMGB1-208ENST00000490788 PSAPP07602 524 aa4.01□□□□□ -1.77
HMGB1-208ENST00000490788 MPSTP25325 297 aa4.01□□□□□ -1.77
HMGB1-208ENST00000490788 DNM1Q05193 864 aaKnown RBP4.01□□□□□ -1.77
HMGB1-208ENST00000490788 ZNF211Q13398 564 aaPredicted RBP4.01□□□□□ -1.77
HMGB1-208ENST00000490788 MTMR3Q13615 1198 aa4.01□□□□□ -1.77
HMGB1-208ENST00000490788 C8orf34Q49A92 452 aa4.01□□□□□ -1.77
HMGB1-208ENST00000490788 TTC39BQ5VTQ0 682 aaPredicted RBP4.01□□□□□ -1.77
HMGB1-208ENST00000490788 CD163Q86VB7 1156 aa4.01□□□□□ -1.77
HMGB1-208ENST00000490788 TNFRSF25Q93038 417 aa4.01□□□□□ -1.77
HMGB1-208ENST00000490788 RBSNQ9H1K0 784 aa4.01□□□□□ -1.77
HMGB1-208ENST00000490788 ANO2Q9NQ90 1003 aa4.01□□□□□ -1.77
HMGB1-208ENST00000490788 SPDYE3A6NKU9 549 aa4□□□□□ -1.77
HMGB1-208ENST00000490788 ADARB2-AS1A8MUL3 147 aa4□□□□□ -1.77
HMGB1-208ENST00000490788 H3BRB1 525 aa4□□□□□ -1.77
HMGB1-208ENST00000490788 BRD1O95696 1058 aa4□□□□□ -1.77
HMGB1-208ENST00000490788 EGFRP00533 1210 aa4□□□□□ -1.77
HMGB1-208ENST00000490788 GHRHP01286 108 aa4□□□□□ -1.77
HMGB1-208ENST00000490788 TARSP26639 723 aaKnown RBP4□□□□□ -1.77
HMGB1-208ENST00000490788 EIF1AXP47813 144 aaKnown RBP4□□□□□ -1.77
HMGB1-208ENST00000490788 PLAURQ03405 335 aa4□□□□□ -1.77
HMGB1-208ENST00000490788 DHX32Q7L7V1 743 aaKnown RBP4□□□□□ -1.77
HMGB1-208ENST00000490788 ZNF438Q7Z4V0 828 aa4□□□□□ -1.77
HMGB1-208ENST00000490788 NLRP13Q86W25 1043 aa4□□□□□ -1.77
HMGB1-208ENST00000490788 ATCAYQ86WG3 371 aa4□□□□□ -1.77
HMGB1-208ENST00000490788 MICALL1Q8N3F8 863 aa4□□□□□ -1.77
HMGB1-208ENST00000490788 EDEM1Q92611 657 aa4□□□□□ -1.77
HMGB1-208ENST00000490788 NUDT16Q96DE0 195 aaKnown RBP4□□□□□ -1.77
HMGB1-208ENST00000490788 SPACA7Q96KW9 195 aa4□□□□□ -1.77
HMGB1-208ENST00000490788 SUV39H2Q9H5I1 410 aa4□□□□□ -1.77
HMGB1-208ENST00000490788 TUT1Q9H6E5 874 aaKnown RBP4□□□□□ -1.77
HMGB1-208ENST00000490788 DNAJB12Q9NXW2 375 aaKnown RBP4□□□□□ -1.77
HMGB1-208ENST00000490788 EGFL7Q9UHF1 273 aa4□□□□□ -1.77
HMGB1-208ENST00000490788 KLF15Q9UIH9 416 aa4□□□□□ -1.77
HMGB1-208ENST00000490788 HCN2Q9UL51 889 aa4□□□□□ -1.77
HMGB1-208ENST00000490788 PATL2C9JE40 543 aaKnown RBP3.99□□□□□ -1.77
HMGB1-208ENST00000490788 M0R082 166 aa3.99□□□□□ -1.77
HMGB1-208ENST00000490788 ZBTB39O15060 712 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms