RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 PSAPL1Q6NUJ1 521 aa6.66□□□□□ -1.34
CPSF3-205ENST00000489629 CAPN12Q6ZSI9 719 aa6.66□□□□□ -1.34
CPSF3-205ENST00000489629 DHX32Q7L7V1 743 aaKnown RBP6.66□□□□□ -1.34
CPSF3-205ENST00000489629 KRT25Q7Z3Z0 450 aa6.66□□□□□ -1.34
CPSF3-205ENST00000489629 TRPM4Q8TD43 1214 aa6.66□□□□□ -1.34
CPSF3-205ENST00000489629 NUDT8Q8WV74 236 aa6.66□□□□□ -1.34
CPSF3-205ENST00000489629 PBXIP1Q96AQ6 731 aa6.66□□□□□ -1.34
CPSF3-205ENST00000489629 USP20Q9Y2K6 914 aa6.66□□□□□ -1.34
CPSF3-205ENST00000489629 GTF3C3Q9Y5Q9 886 aa6.66□□□□□ -1.34
CPSF3-205ENST00000489629 TNFRSF10BO14763 440 aa6.65□□□□□ -1.34
CPSF3-205ENST00000489629 SASH3O75995 380 aa6.65□□□□□ -1.34
CPSF3-205ENST00000489629 GATA4P43694 442 aa6.65□□□□□ -1.34
CPSF3-205ENST00000489629 AFF1P51825 1210 aaKnown RBP6.65□□□□□ -1.34
CPSF3-205ENST00000489629 TRIM28Q13263 835 aaKnown RBP6.65□□□□□ -1.34
CPSF3-205ENST00000489629 GRIK5Q16478 980 aa6.65□□□□□ -1.34
CPSF3-205ENST00000489629 ETFBKMTQ8IXQ9 262 aa6.65□□□□□ -1.34
CPSF3-205ENST00000489629 CLP1Q92989 425 aaKnown RBP6.65□□□□□ -1.34
CPSF3-205ENST00000489629 LPIN3Q9BQK8 851 aa6.65□□□□□ -1.34
CPSF3-205ENST00000489629 JPH1Q9HDC5 661 aaPredicted RBP6.65□□□□□ -1.34
CPSF3-205ENST00000489629 SERPINA10Q9UK55 444 aa6.65□□□□□ -1.34
CPSF3-205ENST00000489629 KCNMB2Q9Y691 235 aa6.65□□□□□ -1.34
CPSF3-205ENST00000489629 A0A0A0MRY4 1105 aa6.64□□□□□ -1.35
CPSF3-205ENST00000489629 RARAP10276 462 aa6.64□□□□□ -1.35
CPSF3-205ENST00000489629 GRIK4Q16099 956 aa6.64□□□□□ -1.35
CPSF3-205ENST00000489629 PCSK7Q16549 785 aa6.64□□□□□ -1.35
CPSF3-205ENST00000489629 TRAPPC3LQ5T215 181 aa6.64□□□□□ -1.35
CPSF3-205ENST00000489629 C16orf46Q6P387 395 aa6.64□□□□□ -1.35
CPSF3-205ENST00000489629 FRRS1LQ9P0K9 344 aa6.64□□□□□ -1.35
CPSF3-205ENST00000489629 ARID3CA6NKF2 412 aa6.63□□□□□ -1.35
CPSF3-205ENST00000489629 RGS9O75916 674 aaPredicted RBP6.63□□□□□ -1.35
CPSF3-205ENST00000489629 APBA3O96018 575 aa6.63□□□□□ -1.35
CPSF3-205ENST00000489629 BRD2P25440 801 aaKnown RBP6.63□□□□□ -1.35
CPSF3-205ENST00000489629 GPLD1P80108 840 aa6.63□□□□□ -1.35
CPSF3-205ENST00000489629 PLAURQ03405 335 aa6.63□□□□□ -1.35
CPSF3-205ENST00000489629 DOC2BQ14184 412 aa6.63□□□□□ -1.35
CPSF3-205ENST00000489629 PERM1Q5SV97 790 aa6.63□□□□□ -1.35
CPSF3-205ENST00000489629 FAM35AQ86V20 835 aa6.63□□□□□ -1.35
CPSF3-205ENST00000489629 RGL4Q8IZJ4 473 aa6.63□□□□□ -1.35
CPSF3-205ENST00000489629 CMTR1Q8N1G2 835 aaKnown RBP6.63□□□□□ -1.35
CPSF3-205ENST00000489629 TTC9Q92623 222 aa6.63□□□□□ -1.35
CPSF3-205ENST00000489629 CCDC97Q96F63 343 aaPredicted RBP6.63□□□□□ -1.35
CPSF3-205ENST00000489629 PTCD1O75127 700 aaKnown RBP6.62□□□□□ -1.35
CPSF3-205ENST00000489629 XYLBO75191 536 aa6.62□□□□□ -1.35
CPSF3-205ENST00000489629 CPB1P15086 417 aa6.62□□□□□ -1.35
CPSF3-205ENST00000489629 ITGB7P26010 798 aa6.62□□□□□ -1.35
CPSF3-205ENST00000489629 NRLP54845 237 aa6.62□□□□□ -1.35
CPSF3-205ENST00000489629 MKNK1Q9BUB5 465 aa6.62□□□□□ -1.35
CPSF3-205ENST00000489629 TLR7Q9NYK1 1049 aaKnown RBP6.62□□□□□ -1.35
CPSF3-205ENST00000489629 HOXD8P13378 290 aaPredicted RBP6.61□□□□□ -1.35
CPSF3-205ENST00000489629 SELPP16109 830 aa6.61□□□□□ -1.35
CPSF3-205ENST00000489629 MLLT1Q03111 559 aaPredicted RBP6.61□□□□□ -1.35
CPSF3-205ENST00000489629 NAA30Q147X3 362 aaPredicted RBP6.61□□□□□ -1.35
CPSF3-205ENST00000489629 TRIP4Q15650 581 aaPredicted RBP6.61□□□□□ -1.35
CPSF3-205ENST00000489629 MSL1Q68DK7 614 aa6.61□□□□□ -1.35
CPSF3-205ENST00000489629 NACC1Q96RE7 527 aa6.61□□□□□ -1.35
CPSF3-205ENST00000489629 C9orf172C9J069 976 aa6.6□□□□□ -1.35
CPSF3-205ENST00000489629 MMP20O60882 483 aa6.6□□□□□ -1.35
CPSF3-205ENST00000489629 ELNP15502 786 aa6.6□□□□□ -1.35
CPSF3-205ENST00000489629 ADGRE1Q14246 886 aa6.6□□□□□ -1.35
CPSF3-205ENST00000489629 DMRTC2Q8IXT2 367 aaPredicted RBP6.6□□□□□ -1.35
CPSF3-205ENST00000489629 FMR1NBQ8N0W7 255 aaPredicted RBP6.6□□□□□ -1.35
CPSF3-205ENST00000489629 RSPO4Q2I0M5 234 aaPredicted RBP6.59□□□□□ -1.35
CPSF3-205ENST00000489629 NKAPLQ5M9Q1 402 aa6.59□□□□□ -1.35
CPSF3-205ENST00000489629 ELMSAN1Q6PJG2 1045 aa6.59□□□□□ -1.35
CPSF3-205ENST00000489629 HFE2Q6ZVN8 426 aa6.59□□□□□ -1.35
CPSF3-205ENST00000489629 LENG1Q96BZ8 264 aaPredicted RBP6.59□□□□□ -1.35
CPSF3-205ENST00000489629 TPSG1Q9NRR2 321 aa6.59□□□□□ -1.35
CPSF3-205ENST00000489629 ZBTB39O15060 712 aa6.58□□□□□ -1.36
CPSF3-205ENST00000489629 ATP2B4P23634 1241 aa6.58□□□□□ -1.36
CPSF3-205ENST00000489629 SOX18P35713 384 aa6.58□□□□□ -1.36
CPSF3-205ENST00000489629 RAC1P63000 192 aa6.58□□□□□ -1.36
CPSF3-205ENST00000489629 SHISA2Q6UWI4 295 aa6.58□□□□□ -1.36
CPSF3-205ENST00000489629 NLRP13Q86W25 1043 aa6.58□□□□□ -1.36
CPSF3-205ENST00000489629 SMG9Q9H0W8 520 aaKnown RBP6.58□□□□□ -1.36
CPSF3-205ENST00000489629 STIM2Q9P246 746 aa6.58□□□□□ -1.36
CPSF3-205ENST00000489629 LOC102724428A0A0B4J2F2 783 aa6.57□□□□□ -1.36
CPSF3-205ENST00000489629 J3QW42 95 aa6.57□□□□□ -1.36
CPSF3-205ENST00000489629 PSAPP07602 524 aa6.57□□□□□ -1.36
CPSF3-205ENST00000489629 ARID4AP29374 1257 aaPredicted RBP6.57□□□□□ -1.36
CPSF3-205ENST00000489629 ZAP70P43403 619 aa6.57□□□□□ -1.36
CPSF3-205ENST00000489629 SIK1P57059 783 aa6.57□□□□□ -1.36
CPSF3-205ENST00000489629 MBTPS1Q14703 1052 aa6.57□□□□□ -1.36
CPSF3-205ENST00000489629 FBXO11Q86XK2 927 aa6.57□□□□□ -1.36
CPSF3-205ENST00000489629 DTWD1Q8N5C7 304 aa6.57□□□□□ -1.36
CPSF3-205ENST00000489629 SEMA6BQ9H3T3 888 aa6.57□□□□□ -1.36
CPSF3-205ENST00000489629 C1orf115Q9H7X2 142 aa6.57□□□□□ -1.36
CPSF3-205ENST00000489629 SEPT3Q9UH03 358 aa6.57□□□□□ -1.36
CPSF3-205ENST00000489629 CCDC82Q8N4S0 544 aa6.56□□□□□ -1.36
CPSF3-205ENST00000489629 PIK3R5Q8WYR1 880 aa6.56□□□□□ -1.36
CPSF3-205ENST00000489629 FAM13BQ9NYF5 915 aa6.56□□□□□ -1.36
CPSF3-205ENST00000489629 TMEM88BA6NKF7 163 aa6.55□□□□□ -1.36
CPSF3-205ENST00000489629 UBAP1LF5GYI3 381 aa6.55□□□□□ -1.36
CPSF3-205ENST00000489629 EIF2AK2P19525 551 aaKnown RBP6.55□□□□□ -1.36
CPSF3-205ENST00000489629 TXNRD3Q86VQ6 643 aa6.55□□□□□ -1.36
CPSF3-205ENST00000489629 WFDC8Q8IUA0 241 aa6.55□□□□□ -1.36
CPSF3-205ENST00000489629 ABTB2Q8N961 1025 aa6.55□□□□□ -1.36
CPSF3-205ENST00000489629 OR13H1Q8NG92 308 aa6.55□□□□□ -1.36
CPSF3-205ENST00000489629 PLD4Q96BZ4 506 aa6.55□□□□□ -1.36
CPSF3-205ENST00000489629 NSUN5Q96P11 429 aaKnown RBP6.55□□□□□ -1.36
CPSF3-205ENST00000489629 DEAF1O75398 565 aaPredicted RBP6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 136.2 ms