RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 GRAPLQ8TC17 118 aaPredicted RBP20.17■□□□□ 0.82
UPF3A-208ENST00000484246 SLX4Q8IY92 1834 aa20.17■□□□□ 0.82
UPF3A-208ENST00000484246 BBOX1O75936 387 aa20.16■□□□□ 0.82
UPF3A-208ENST00000484246 RTL5Q5HYW3 569 aaPredicted RBP20.16■□□□□ 0.82
UPF3A-208ENST00000484246 ARHGAP45Q92619 1136 aa20.16■□□□□ 0.82
UPF3A-208ENST00000484246 SRCIN1Q9C0H9 1055 aa20.16■□□□□ 0.82
UPF3A-208ENST00000484246 ZC3H4Q9UPT8 1303 aaKnown RBP20.16■□□□□ 0.82
UPF3A-208ENST00000484246 PPEF1O14829 653 aaPredicted RBP20.15■□□□□ 0.82
UPF3A-208ENST00000484246 CTSWP56202 376 aa20.15■□□□□ 0.82
UPF3A-208ENST00000484246 CCDC152Q4G0S7 254 aa20.15■□□□□ 0.82
UPF3A-208ENST00000484246 UBE3BQ7Z3V4 1068 aa20.15■□□□□ 0.82
UPF3A-208ENST00000484246 RTKN2Q8IZC4 609 aa20.15■□□□□ 0.82
UPF3A-208ENST00000484246 TAOK3Q9H2K8 898 aa20.15■□□□□ 0.82
UPF3A-208ENST00000484246 CHD4Q14839 1912 aa20.15■□□□□ 0.82
UPF3A-208ENST00000484246 UTYO14607 1347 aa20.14■□□□□ 0.81
UPF3A-208ENST00000484246 GRM8O00222 908 aa20.14■□□□□ 0.81
UPF3A-208ENST00000484246 RASSF7Q02833 373 aa20.14■□□□□ 0.81
UPF3A-208ENST00000484246 API5Q9BZZ5 524 aaKnown RBP20.14■□□□□ 0.81
UPF3A-208ENST00000484246 ATP6V0A2Q9Y487 856 aa20.14■□□□□ 0.81
UPF3A-208ENST00000484246 LMNB1P20700 586 aa20.13■□□□□ 0.81
UPF3A-208ENST00000484246 SLC4A10Q6U841 1118 aa20.13■□□□□ 0.81
UPF3A-208ENST00000484246 PRELPP51888 382 aa20.12■□□□□ 0.81
UPF3A-208ENST00000484246 FKBP4Q02790 459 aaKnown RBP eCLIP20.12■□□□□ 0.81
UPF3A-208ENST00000484246 C9orf131Q5VYM1 1079 aa20.12■□□□□ 0.81
UPF3A-208ENST00000484246 TTLL11Q8NHH1 800 aa20.12■□□□□ 0.81
UPF3A-208ENST00000484246 JARID2Q92833 1246 aaPredicted RBP20.12■□□□□ 0.81
UPF3A-208ENST00000484246 PSMD1Q99460 953 aa20.12■□□□□ 0.81
UPF3A-208ENST00000484246 NOB1Q9ULX3 412 aaKnown RBP20.12■□□□□ 0.81
UPF3A-208ENST00000484246 FER1L6Q2WGJ9 1857 aa20.11■□□□□ 0.81
UPF3A-208ENST00000484246 SP8Q8IXZ3 490 aa20.11■□□□□ 0.81
UPF3A-208ENST00000484246 ZNF219Q9P2Y4 722 aaPredicted RBP20.11■□□□□ 0.81
UPF3A-208ENST00000484246 LRRC37AA6NMS7 1700 aa20.1■□□□□ 0.81
UPF3A-208ENST00000484246 CSF1RP07333 972 aa20.1■□□□□ 0.81
UPF3A-208ENST00000484246 CCT4P50991 539 aaKnown RBP20.1■□□□□ 0.81
UPF3A-208ENST00000484246 OLFM4Q6UX06 510 aa20.1■□□□□ 0.81
UPF3A-208ENST00000484246 CELF1Q92879 486 aaKnown RBP20.1■□□□□ 0.81
UPF3A-208ENST00000484246 IPO8O15397 1037 aaKnown RBP20.09■□□□□ 0.81
UPF3A-208ENST00000484246 RNF181Q9P0P0 153 aa20.09■□□□□ 0.81
UPF3A-208ENST00000484246 COL4A1P02462 1669 aa20.08■□□□□ 0.81
UPF3A-208ENST00000484246 RPS8P62241 208 aaKnown RBP20.08■□□□□ 0.81
UPF3A-208ENST00000484246 RTFDC1Q9BY42 306 aaPredicted RBP20.08■□□□□ 0.81
UPF3A-208ENST00000484246 C9orf78Q9NZ63 289 aaPredicted RBP20.08■□□□□ 0.81
UPF3A-208ENST00000484246 BCAR3O75815 825 aa20.07■□□□□ 0.8
UPF3A-208ENST00000484246 FOXO4P98177 505 aa20.07■□□□□ 0.8
UPF3A-208ENST00000484246 ATF7IPQ6VMQ6 1270 aa20.07■□□□□ 0.8
UPF3A-208ENST00000484246 CDC5LQ99459 802 aaKnown RBP20.07■□□□□ 0.8
UPF3A-208ENST00000484246 TMX4Q9H1E5 349 aaPredicted RBP20.07■□□□□ 0.8
UPF3A-208ENST00000484246 GREM2Q9H772 168 aa20.07■□□□□ 0.8
UPF3A-208ENST00000484246 SEC31BQ9NQW1 1179 aa20.07■□□□□ 0.8
UPF3A-208ENST00000484246 TRIM27P14373 513 aa20.06■□□□□ 0.8
UPF3A-208ENST00000484246 CACNA1SQ13698 1873 aa20.06■□□□□ 0.8
UPF3A-208ENST00000484246 INTS3Q68E01 1043 aaKnown RBP20.06■□□□□ 0.8
UPF3A-208ENST00000484246 SLC51AQ86UW1 340 aa20.06■□□□□ 0.8
UPF3A-208ENST00000484246 VPS33BQ9H267 617 aa20.06■□□□□ 0.8
UPF3A-208ENST00000484246 NBPF7P0C2Y1 421 aaPredicted RBP20.05■□□□□ 0.8
UPF3A-208ENST00000484246 FAM161AQ3B820 660 aa20.05■□□□□ 0.8
UPF3A-208ENST00000484246 RABL6Q3YEC7 729 aaPredicted RBP20.05■□□□□ 0.8
UPF3A-208ENST00000484246 USP44Q9H0E7 712 aa20.05■□□□□ 0.8
UPF3A-208ENST00000484246 DUOX1Q9NRD9 1551 aa20.04■□□□□ 0.8
UPF3A-208ENST00000484246 IARSP41252 1262 aaKnown RBP20.04■□□□□ 0.8
UPF3A-208ENST00000484246 ANKRD18AQ8IVF6 992 aa20.04■□□□□ 0.8
UPF3A-208ENST00000484246 SUPT20HQ8NEM7 779 aa20.04■□□□□ 0.8
UPF3A-208ENST00000484246 KAZALD1Q96I82 304 aa20.04■□□□□ 0.8
UPF3A-208ENST00000484246 LTBP1Q14766 1721 aa20.03■□□□□ 0.8
UPF3A-208ENST00000484246 C1QTNF8P60827 252 aa20.03■□□□□ 0.8
UPF3A-208ENST00000484246 EPHA10Q5JZY3 1008 aa20.03■□□□□ 0.8
UPF3A-208ENST00000484246 ZKSCAN2Q63HK3 967 aa20.03■□□□□ 0.8
UPF3A-208ENST00000484246 SUCLG2Q96I99 432 aa20.03■□□□□ 0.8
UPF3A-208ENST00000484246 ZNF277Q9NRM2 450 aaPredicted RBP20.03■□□□□ 0.8
UPF3A-208ENST00000484246 PODXL2Q9NZ53 605 aa20.03■□□□□ 0.8
UPF3A-208ENST00000484246 SBF1O95248 1867 aa20.03■□□□□ 0.8
UPF3A-208ENST00000484246 ITGA6P23229 1130 aa20.02■□□□□ 0.8
UPF3A-208ENST00000484246 DPP8Q6V1X1 898 aaPredicted RBP20.02■□□□□ 0.8
UPF3A-208ENST00000484246 MPNDQ8N594 471 aa20.02■□□□□ 0.8
UPF3A-208ENST00000484246 CCDC85AQ96PX6 553 aaPredicted RBP20.02■□□□□ 0.8
UPF3A-208ENST00000484246 BSDC1Q9NW68 430 aaPredicted RBP20.02■□□□□ 0.8
UPF3A-208ENST00000484246 LMBR1LQ6UX01 489 aa20.01■□□□□ 0.79
UPF3A-208ENST00000484246 MYH3P11055 1940 aa20.01■□□□□ 0.79
UPF3A-208ENST00000484246 TIAM2Q8IVF5 1701 aa20.01■□□□□ 0.79
UPF3A-208ENST00000484246 FRAT1Q92837 279 aaPredicted RBP20■□□□□ 0.79
UPF3A-208ENST00000484246 ANKRD18BA2A2Z9 1011 aa19.99■□□□□ 0.79
UPF3A-208ENST00000484246 IGHMBP2P38935 993 aaKnown RBP19.99■□□□□ 0.79
UPF3A-208ENST00000484246 GPSM2P81274 684 aa19.99■□□□□ 0.79
UPF3A-208ENST00000484246 KIAA2012Q0VF49 1180 aa19.99■□□□□ 0.79
UPF3A-208ENST00000484246 IFIT5Q13325 482 aaKnown RBP19.99■□□□□ 0.79
UPF3A-208ENST00000484246 ANKRD44Q8N8A2 993 aa19.99■□□□□ 0.79
UPF3A-208ENST00000484246 BICC1Q9H694 974 aaKnown RBP19.99■□□□□ 0.79
UPF3A-208ENST00000484246 COL4A5P29400 1685 aa19.98■□□□□ 0.79
UPF3A-208ENST00000484246 FZD9O00144 591 aa19.98■□□□□ 0.79
UPF3A-208ENST00000484246 HDAC5Q9UQL6 1122 aa19.98■□□□□ 0.79
UPF3A-208ENST00000484246 XDHP47989 1333 aa19.98■□□□□ 0.79
UPF3A-208ENST00000484246 KDM2BQ8NHM5 1336 aa19.98■□□□□ 0.79
UPF3A-208ENST00000484246 GLTPD2A6NH11 291 aa19.97■□□□□ 0.79
UPF3A-208ENST00000484246 UBTFL1P0CB47 393 aaPredicted RBP19.97■□□□□ 0.79
UPF3A-208ENST00000484246 RCAN3Q9UKA8 241 aa19.97■□□□□ 0.79
UPF3A-208ENST00000484246 MINPP1Q9UNW1 487 aa19.97■□□□□ 0.79
UPF3A-208ENST00000484246 NSFL1CQ9UNZ2 370 aaKnown RBP19.97■□□□□ 0.79
UPF3A-208ENST00000484246 TNNQ9UQP3 1299 aa19.97■□□□□ 0.79
UPF3A-208ENST00000484246 DICER1Q9UPY3 1922 aaKnown RBP19.96■□□□□ 0.79
UPF3A-208ENST00000484246 PPIP5K2O43314 1243 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms