RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 TNNQ9UQP3 1299 aa24.89■■□□□ 1.58
LIME1-205ENST00000480139 NBPF7P0C2Y1 421 aaPredicted RBP24.88■■□□□ 1.57
LIME1-205ENST00000480139 MS4A1P11836 297 aa24.88■■□□□ 1.57
LIME1-205ENST00000480139 DDX46Q7L014 1031 aaKnown RBP24.88■■□□□ 1.57
LIME1-205ENST00000480139 FTSJ3Q8IY81 847 aaKnown RBP24.88■■□□□ 1.57
LIME1-205ENST00000480139 PELP1Q8IZL8 1130 aaKnown RBP24.88■■□□□ 1.57
LIME1-205ENST00000480139 CLUAP1Q96AJ1 413 aa24.88■■□□□ 1.57
LIME1-205ENST00000480139 WWC3Q9ULE0 1092 aa24.88■■□□□ 1.57
LIME1-205ENST00000480139 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.87■■□□□ 1.57
LIME1-205ENST00000480139 TTLL11Q8NHH1 800 aa24.87■■□□□ 1.57
LIME1-205ENST00000480139 GOLGB1Q14789 3259 aaKnown RBP24.87■■□□□ 1.57
LIME1-205ENST00000480139 CSF1RP07333 972 aa24.86■■□□□ 1.57
LIME1-205ENST00000480139 TAF1P21675 1872 aa24.85■■□□□ 1.57
LIME1-205ENST00000480139 FOXO4P98177 505 aa24.85■■□□□ 1.57
LIME1-205ENST00000480139 GRAPQ13588 217 aa24.85■■□□□ 1.57
LIME1-205ENST00000480139 SOGA3Q5TF21 947 aa24.85■■□□□ 1.57
LIME1-205ENST00000480139 TMEM57Q8N5G2 664 aa24.85■■□□□ 1.57
LIME1-205ENST00000480139 GRAPLQ8TC17 118 aaPredicted RBP24.85■■□□□ 1.57
LIME1-205ENST00000480139 C7orf43Q8WVR3 580 aa24.85■■□□□ 1.57
LIME1-205ENST00000480139 LRRC37AA6NMS7 1700 aa24.84■■□□□ 1.57
LIME1-205ENST00000480139 BBOX1O75936 387 aa24.84■■□□□ 1.57
LIME1-205ENST00000480139 TMC4Q7Z404 712 aa24.84■■□□□ 1.57
LIME1-205ENST00000480139 HDAC5Q9UQL6 1122 aa24.84■■□□□ 1.57
LIME1-205ENST00000480139 FER1L6Q2WGJ9 1857 aa24.83■■□□□ 1.57
LIME1-205ENST00000480139 RLBP1P12271 317 aa24.83■■□□□ 1.57
LIME1-205ENST00000480139 KAZALD1Q96I82 304 aa24.83■■□□□ 1.57
LIME1-205ENST00000480139 SUCLG2Q96I99 432 aa24.83■■□□□ 1.57
LIME1-205ENST00000480139 COL4A1P02462 1669 aa24.82■■□□□ 1.56
LIME1-205ENST00000480139 PPEF1O14829 653 aaPredicted RBP24.82■■□□□ 1.56
LIME1-205ENST00000480139 GNAI3P08754 354 aa24.82■■□□□ 1.56
LIME1-205ENST00000480139 UBTFL1P0CB47 393 aaPredicted RBP24.82■■□□□ 1.56
LIME1-205ENST00000480139 C21orf2O43822 256 aa24.81■■□□□ 1.56
LIME1-205ENST00000480139 RABL6Q3YEC7 729 aaPredicted RBP24.81■■□□□ 1.56
LIME1-205ENST00000480139 EPHA10Q5JZY3 1008 aa24.81■■□□□ 1.56
LIME1-205ENST00000480139 CC2D2BQ6DHV5 1058 aa24.81■■□□□ 1.56
LIME1-205ENST00000480139 GREM2Q9H772 168 aa24.81■■□□□ 1.56
LIME1-205ENST00000480139 SNED1Q8TER0 1413 aa24.8■■□□□ 1.56
LIME1-205ENST00000480139 PDE3AQ14432 1141 aa24.8■■□□□ 1.56
LIME1-205ENST00000480139 GRIPAP1Q4V328 841 aa24.8■■□□□ 1.56
LIME1-205ENST00000480139 CELF1Q92879 486 aaKnown RBP24.8■■□□□ 1.56
LIME1-205ENST00000480139 CDC5LQ99459 802 aaKnown RBP24.8■■□□□ 1.56
LIME1-205ENST00000480139 MEIS3Q99687 375 aa24.8■■□□□ 1.56
LIME1-205ENST00000480139 SEC31BQ9NQW1 1179 aa24.8■■□□□ 1.56
LIME1-205ENST00000480139 PLIN1O60240 522 aa24.79■■□□□ 1.56
LIME1-205ENST00000480139 RPS8P62241 208 aaKnown RBP24.79■■□□□ 1.56
LIME1-205ENST00000480139 CCDC93Q567U6 631 aa24.79■■□□□ 1.56
LIME1-205ENST00000480139 LMBR1LQ6UX01 489 aa24.79■■□□□ 1.56
LIME1-205ENST00000480139 PANK1Q8TE04 598 aa24.79■■□□□ 1.56
LIME1-205ENST00000480139 CCDC85AQ96PX6 553 aaPredicted RBP24.79■■□□□ 1.56
LIME1-205ENST00000480139 BICC1Q9H694 974 aaKnown RBP24.79■■□□□ 1.56
LIME1-205ENST00000480139 ATP6V0A2Q9Y487 856 aa24.79■■□□□ 1.56
LIME1-205ENST00000480139 FAM161AQ3B820 660 aa24.78■■□□□ 1.56
LIME1-205ENST00000480139 ITPRIPQ8IWB1 547 aa24.78■■□□□ 1.56
LIME1-205ENST00000480139 SP8Q8IXZ3 490 aa24.78■■□□□ 1.56
LIME1-205ENST00000480139 CHD4Q14839 1912 aa24.78■■□□□ 1.56
LIME1-205ENST00000480139 SPEF2Q9C093 1822 aa24.77■■□□□ 1.56
LIME1-205ENST00000480139 ITGA6P23229 1130 aa24.77■■□□□ 1.56
LIME1-205ENST00000480139 ANKRD44Q8N8A2 993 aa24.77■■□□□ 1.56
LIME1-205ENST00000480139 UTRNP46939 3433 aa24.76■■□□□ 1.55
LIME1-205ENST00000480139 RRP1P56182 461 aaKnown RBP24.76■■□□□ 1.55
LIME1-205ENST00000480139 ARHGAP27Q6ZUM4 889 aa24.76■■□□□ 1.55
LIME1-205ENST00000480139 ANKRD18AQ8IVF6 992 aa24.76■■□□□ 1.55
LIME1-205ENST00000480139 RTKN2Q8IZC4 609 aa24.76■■□□□ 1.55
LIME1-205ENST00000480139 TMX4Q9H1E5 349 aaPredicted RBP24.76■■□□□ 1.55
LIME1-205ENST00000480139 ZNF219Q9P2Y4 722 aaPredicted RBP24.76■■□□□ 1.55
LIME1-205ENST00000480139 LTBP3Q9NS15 1303 aa24.76■■□□□ 1.55
LIME1-205ENST00000480139 ANKRD18BA2A2Z9 1011 aa24.75■■□□□ 1.55
LIME1-205ENST00000480139 IFIT5Q13325 482 aaKnown RBP24.75■■□□□ 1.55
LIME1-205ENST00000480139 MVPQ14764 893 aaKnown RBP24.75■■□□□ 1.55
LIME1-205ENST00000480139 LTBP1Q14766 1721 aa24.75■■□□□ 1.55
LIME1-205ENST00000480139 SBF1O95248 1867 aa24.75■■□□□ 1.55
LIME1-205ENST00000480139 ZBTB7BO15156 539 aaPredicted RBP24.74■■□□□ 1.55
LIME1-205ENST00000480139 CCDC57Q2TAC2 916 aa24.74■■□□□ 1.55
LIME1-205ENST00000480139 LRRFIP2Q9Y608 721 aaKnown RBP24.74■■□□□ 1.55
LIME1-205ENST00000480139 NFKBIEO00221 500 aa24.73■■□□□ 1.55
LIME1-205ENST00000480139 GNAI2P04899 355 aa24.73■■□□□ 1.55
LIME1-205ENST00000480139 OLFM4Q6UX06 510 aa24.73■■□□□ 1.55
LIME1-205ENST00000480139 BSDC1Q9NW68 430 aaPredicted RBP24.73■■□□□ 1.55
LIME1-205ENST00000480139 DDX19BQ9UMR2 479 aa24.73■■□□□ 1.55
LIME1-205ENST00000480139 CHMP3Q9Y3E7 222 aa24.73■■□□□ 1.55
LIME1-205ENST00000480139 IGHMBP2P38935 993 aaKnown RBP24.72■■□□□ 1.55
LIME1-205ENST00000480139 PSMD1Q99460 953 aa24.72■■□□□ 1.55
LIME1-205ENST00000480139 TAOK3Q9H2K8 898 aa24.72■■□□□ 1.55
LIME1-205ENST00000480139 FKBP4Q02790 459 aaKnown RBP eCLIP24.71■■□□□ 1.551e-6■■□□□ 11.7
LIME1-205ENST00000480139 C20orf194Q5TEA3 1177 aa24.71■■□□□ 1.55
LIME1-205ENST00000480139 CHMP4BQ9H444 224 aaKnown RBP24.71■■□□□ 1.55
LIME1-205ENST00000480139 COG6Q9Y2V7 657 aa24.71■■□□□ 1.55
LIME1-205ENST00000480139 MTX1Q13505 466 aa24.7■■□□□ 1.54
LIME1-205ENST00000480139 DUOX1Q9NRD9 1551 aa24.7■■□□□ 1.54
LIME1-205ENST00000480139 DICER1Q9UPY3 1922 aaKnown RBP24.69■■□□□ 1.54
LIME1-205ENST00000480139 CCDC88AQ3V6T2 1871 aa24.69■■□□□ 1.54
LIME1-205ENST00000480139 SLC51AQ86UW1 340 aa24.69■■□□□ 1.54
LIME1-205ENST00000480139 MPHOSPH8Q99549 860 aa24.69■■□□□ 1.54
LIME1-205ENST00000480139 RTFDC1Q9BY42 306 aaPredicted RBP24.69■■□□□ 1.54
LIME1-205ENST00000480139 A0A1B0GUL6 1792 aa24.69■■□□□ 1.54
LIME1-205ENST00000480139 RASSF7Q02833 373 aa24.68■■□□□ 1.54
LIME1-205ENST00000480139 MPNDQ8N594 471 aa24.68■■□□□ 1.54
LIME1-205ENST00000480139 PODXL2Q9NZ53 605 aa24.68■■□□□ 1.54
LIME1-205ENST00000480139 LMNB1P20700 586 aa24.67■■□□□ 1.54
LIME1-205ENST00000480139 TAF7LQ5H9L4 462 aa24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 103.7 ms