RNA–Protein interactions for RNA: ENST00000477461.1

UBR3-209, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 4

Gene UBR3, Length 595 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-209ENST00000477461 MKNK1Q9BUB5 465 aa8.59□□□□□ -1.03
UBR3-209ENST00000477461 SAP130Q9H0E3 1048 aa8.59□□□□□ -1.03
UBR3-209ENST00000477461 SEMA6BQ9H3T3 888 aa8.59□□□□□ -1.03
UBR3-209ENST00000477461 RTCBQ9Y3I0 505 aaKnown RBP8.59□□□□□ -1.03
UBR3-209ENST00000477461 RARAP10276 462 aa8.58□□□□□ -1.04
UBR3-209ENST00000477461 AFF1P51825 1210 aaKnown RBP8.58□□□□□ -1.04
UBR3-209ENST00000477461 NAA30Q147X3 362 aaPredicted RBP8.58□□□□□ -1.04
UBR3-209ENST00000477461 TREML1Q86YW5 311 aa8.58□□□□□ -1.04
UBR3-209ENST00000477461 MYO19Q96H55 970 aa8.58□□□□□ -1.04
UBR3-209ENST00000477461 ACIN1Q9UKV3 1341 aaKnown RBP8.57□□□□□ -1.04
UBR3-209ENST00000477461 PLAURQ03405 335 aa8.57□□□□□ -1.04
UBR3-209ENST00000477461 FAM69CQ0P6D2 419 aa8.57□□□□□ -1.04
UBR3-209ENST00000477461 DHX32Q7L7V1 743 aaKnown RBP8.57□□□□□ -1.04
UBR3-209ENST00000477461 EFCC1Q9HA90 598 aa8.57□□□□□ -1.04
UBR3-209ENST00000477461 A0A0A0MRY4 1105 aa8.56□□□□□ -1.04
UBR3-209ENST00000477461 ARID3CA6NKF2 412 aa8.56□□□□□ -1.04
UBR3-209ENST00000477461 SRPK2P78362 688 aaKnown RBP8.56□□□□□ -1.04
UBR3-209ENST00000477461 XYLBO75191 536 aa8.55□□□□□ -1.04
UBR3-209ENST00000477461 OCLNQ16625 522 aa8.55□□□□□ -1.04
UBR3-209ENST00000477461 SWI5Q1ZZU3 235 aa8.55□□□□□ -1.04
UBR3-209ENST00000477461 PERM1Q5SV97 790 aa8.55□□□□□ -1.04
UBR3-209ENST00000477461 ELMSAN1Q6PJG2 1045 aa8.55□□□□□ -1.04
UBR3-209ENST00000477461 SHISA2Q6UWI4 295 aa8.55□□□□□ -1.04
UBR3-209ENST00000477461 J3QW42 95 aa8.54□□□□□ -1.04
UBR3-209ENST00000477461 MAP3K6O95382 1288 aa8.54□□□□□ -1.04
UBR3-209ENST00000477461 FAM26DQ5JW98 314 aa8.54□□□□□ -1.04
UBR3-209ENST00000477461 TMEM164Q5U3C3 297 aa8.54□□□□□ -1.04
UBR3-209ENST00000477461 ETFBKMTQ8IXQ9 262 aa8.54□□□□□ -1.04
UBR3-209ENST00000477461 TPSG1Q9NRR2 321 aa8.54□□□□□ -1.04
UBR3-209ENST00000477461 SELPP16109 830 aa8.53□□□□□ -1.04
UBR3-209ENST00000477461 RAC1P63000 192 aa8.53□□□□□ -1.04
UBR3-209ENST00000477461 ELOAQ14241 798 aaKnown RBP8.53□□□□□ -1.04
UBR3-209ENST00000477461 NACC1Q96RE7 527 aa8.53□□□□□ -1.04
UBR3-209ENST00000477461 LPIN3Q9BQK8 851 aa8.53□□□□□ -1.04
UBR3-209ENST00000477461 ATG7O95352 703 aa8.52□□□□□ -1.05
UBR3-209ENST00000477461 ITGB7P26010 798 aa8.52□□□□□ -1.05
UBR3-209ENST00000477461 C16orf46Q6P387 395 aa8.52□□□□□ -1.05
UBR3-209ENST00000477461 TRPM4Q8TD43 1214 aa8.52□□□□□ -1.05
UBR3-209ENST00000477461 CCDC97Q96F63 343 aaPredicted RBP8.52□□□□□ -1.05
UBR3-209ENST00000477461 SMG9Q9H0W8 520 aaKnown RBP8.52□□□□□ -1.05
UBR3-209ENST00000477461 KCNMB2Q9Y691 235 aa8.52□□□□□ -1.05
UBR3-209ENST00000477461 EIF2AK2P19525 551 aaKnown RBP8.51□□□□□ -1.05
UBR3-209ENST00000477461 BRD2P25440 801 aaKnown RBP8.51□□□□□ -1.05
UBR3-209ENST00000477461 PCSK7Q16549 785 aa8.51□□□□□ -1.05
UBR3-209ENST00000477461 TLR7Q9NYK1 1049 aaKnown RBP8.51□□□□□ -1.05
UBR3-209ENST00000477461 CXXC1Q9P0U4 656 aaPredicted RBP8.51□□□□□ -1.05
UBR3-209ENST00000477461 C9orf172C9J069 976 aa8.5□□□□□ -1.05
UBR3-209ENST00000477461 MMP20O60882 483 aa8.5□□□□□ -1.05
UBR3-209ENST00000477461 ELNP15502 786 aa8.5□□□□□ -1.05
UBR3-209ENST00000477461 GPLD1P80108 840 aa8.5□□□□□ -1.05
UBR3-209ENST00000477461 RSPO4Q2I0M5 234 aaPredicted RBP8.5□□□□□ -1.05
UBR3-209ENST00000477461 MSL1Q68DK7 614 aa8.5□□□□□ -1.05
UBR3-209ENST00000477461 NSUN5Q96P11 429 aaKnown RBP8.5□□□□□ -1.05
UBR3-209ENST00000477461 USP21Q9UK80 565 aa8.5□□□□□ -1.05
UBR3-209ENST00000477461 GRIK5Q16478 980 aa8.49□□□□□ -1.05
UBR3-209ENST00000477461 WFDC8Q8IUA0 241 aa8.49□□□□□ -1.05
UBR3-209ENST00000477461 FMR1NBQ8N0W7 255 aaPredicted RBP8.49□□□□□ -1.05
UBR3-209ENST00000477461 SLAIN2Q9P270 581 aa8.49□□□□□ -1.05
UBR3-209ENST00000477461 LOC102724428A0A0B4J2F2 783 aa8.48□□□□□ -1.05
UBR3-209ENST00000477461 TNFRSF10BO14763 440 aa8.48□□□□□ -1.05
UBR3-209ENST00000477461 EGFRP00533 1210 aa8.48□□□□□ -1.05
UBR3-209ENST00000477461 PSAPP07602 524 aa8.48□□□□□ -1.05
UBR3-209ENST00000477461 ARID4AP29374 1257 aaPredicted RBP8.48□□□□□ -1.05
UBR3-209ENST00000477461 SIK1P57059 783 aa8.48□□□□□ -1.05
UBR3-209ENST00000477461 MBTPS1Q14703 1052 aa8.48□□□□□ -1.05
UBR3-209ENST00000477461 C11orf16Q9NQ32 467 aa8.48□□□□□ -1.05
UBR3-209ENST00000477461 ZBTB39O15060 712 aa8.47□□□□□ -1.05
UBR3-209ENST00000477461 NRLP54845 237 aa8.47□□□□□ -1.05
UBR3-209ENST00000477461 ADGRE1Q14246 886 aa8.47□□□□□ -1.05
UBR3-209ENST00000477461 TRIP4Q15650 581 aaPredicted RBP8.47□□□□□ -1.05
UBR3-209ENST00000477461 NKAPLQ5M9Q1 402 aa8.47□□□□□ -1.05
UBR3-209ENST00000477461 XP32Q5T750 250 aa8.47□□□□□ -1.05
UBR3-209ENST00000477461 GDF6Q6KF10 455 aaPredicted RBP8.47□□□□□ -1.05
UBR3-209ENST00000477461 GPR152Q8TDT2 470 aa8.47□□□□□ -1.05
UBR3-209ENST00000477461 PBXIP1Q96AQ6 731 aa8.47□□□□□ -1.05
UBR3-209ENST00000477461 PLD4Q96BZ4 506 aa8.47□□□□□ -1.05
UBR3-209ENST00000477461 LENG1Q96BZ8 264 aaPredicted RBP8.47□□□□□ -1.05
UBR3-209ENST00000477461 FRRS1LQ9P0K9 344 aa8.47□□□□□ -1.05
UBR3-209ENST00000477461 SEPT3Q9UH03 358 aa8.47□□□□□ -1.05
UBR3-209ENST00000477461 SERPINA10Q9UK55 444 aa8.47□□□□□ -1.05
UBR3-209ENST00000477461 GTF3C3Q9Y5Q9 886 aa8.47□□□□□ -1.05
UBR3-209ENST00000477461 UBAP1LF5GYI3 381 aa8.46□□□□□ -1.06
UBR3-209ENST00000477461 ILDR2Q71H61 639 aa8.46□□□□□ -1.06
UBR3-209ENST00000477461 GHRHP01286 108 aa8.45□□□□□ -1.06
UBR3-209ENST00000477461 ATP2B4P23634 1241 aa8.45□□□□□ -1.06
UBR3-209ENST00000477461 SCNN1AP37088 669 aa8.45□□□□□ -1.06
UBR3-209ENST00000477461 Q8N3U1 123 aa8.45□□□□□ -1.06
UBR3-209ENST00000477461 PIK3R5Q8WYR1 880 aa8.45□□□□□ -1.06
UBR3-209ENST00000477461 CLP1Q92989 425 aaKnown RBP8.45□□□□□ -1.06
UBR3-209ENST00000477461 DYRK3O43781 588 aa8.44□□□□□ -1.06
UBR3-209ENST00000477461 PTCD1O75127 700 aaKnown RBP8.44□□□□□ -1.06
UBR3-209ENST00000477461 ZAP70P43403 619 aa8.44□□□□□ -1.06
UBR3-209ENST00000477461 NRG1Q02297 640 aaPredicted RBP8.44□□□□□ -1.06
UBR3-209ENST00000477461 TXNRD3Q86VQ6 643 aa8.44□□□□□ -1.06
UBR3-209ENST00000477461 NLRP13Q86W25 1043 aa8.44□□□□□ -1.06
UBR3-209ENST00000477461 FBXO11Q86XK2 927 aa8.44□□□□□ -1.06
UBR3-209ENST00000477461 COL26A1Q96A83 441 aa8.44□□□□□ -1.06
UBR3-209ENST00000477461 STIM2Q9P246 746 aa8.44□□□□□ -1.06
UBR3-209ENST00000477461 IREB2P48200 963 aaKnown RBP8.43□□□□□ -1.06
UBR3-209ENST00000477461 ZMYM1Q5SVZ6 1142 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms