RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 IRS4O14654 1257 aaPredicted RBP21.55■■□□□ 1.04
USP40-212ENST00000473191 TRIM28Q13263 835 aaKnown RBP21.55■■□□□ 1.04
USP40-212ENST00000473191 RTFDC1Q9BY42 306 aaPredicted RBP21.55■■□□□ 1.04
USP40-212ENST00000473191 LRRC37AA6NMS7 1700 aa21.55■■□□□ 1.04
USP40-212ENST00000473191 SCNN1DP51172 638 aa21.54■■□□□ 1.04
USP40-212ENST00000473191 EIF6P56537 245 aaKnown RBP21.54■■□□□ 1.04
USP40-212ENST00000473191 SF3B3Q15393 1217 aaKnown RBP21.54■■□□□ 1.04
USP40-212ENST00000473191 GRIPAP1Q4V328 841 aa21.54■■□□□ 1.04
USP40-212ENST00000473191 CCDC30Q5VVM6 783 aa21.54■■□□□ 1.04
USP40-212ENST00000473191 DPP8Q6V1X1 898 aaPredicted RBP21.54■■□□□ 1.04
USP40-212ENST00000473191 G2E3Q7L622 706 aa21.54■■□□□ 1.04
USP40-212ENST00000473191 LDHDQ86WU2 507 aa21.54■■□□□ 1.04
USP40-212ENST00000473191 MPNDQ8N594 471 aa21.54■■□□□ 1.04
USP40-212ENST00000473191 EPS15P42566 896 aa21.53■■□□□ 1.04
USP40-212ENST00000473191 NIM1KQ8IY84 436 aa21.53■■□□□ 1.04
USP40-212ENST00000473191 JMYQ8N9B5 988 aa21.53■■□□□ 1.04
USP40-212ENST00000473191 PASKQ96RG2 1323 aa21.53■■□□□ 1.04
USP40-212ENST00000473191 ITGBL1O95965 494 aaPredicted RBP21.52■■□□□ 1.04
USP40-212ENST00000473191 TWISTNBQ3B726 338 aaPredicted RBP21.52■■□□□ 1.04
USP40-212ENST00000473191 MAP1SQ66K74 1059 aaPredicted RBP21.52■■□□□ 1.04
USP40-212ENST00000473191 ZBTB38Q8NAP3 1195 aaPredicted RBP21.52■■□□□ 1.04
USP40-212ENST00000473191 METTL22Q9BUU2 404 aaPredicted RBP21.52■■□□□ 1.04
USP40-212ENST00000473191 SEC31BQ9NQW1 1179 aa21.52■■□□□ 1.04
USP40-212ENST00000473191 MAP3K2Q9Y2U5 619 aa21.52■■□□□ 1.04
USP40-212ENST00000473191 CXCL9Q07325 125 aa21.51■■□□□ 1.03
USP40-212ENST00000473191 CCDC85AQ96PX6 553 aaPredicted RBP21.51■■□□□ 1.03
USP40-212ENST00000473191 SPINK5Q9NQ38 1064 aaPredicted RBP21.51■■□□□ 1.03
USP40-212ENST00000473191 CLEC11AQ9Y240 323 aa21.51■■□□□ 1.03
USP40-212ENST00000473191 PCNTO95613 3336 aa21.51■■□□□ 1.03
USP40-212ENST00000473191 YDJCA8MPS7 323 aa21.5■■□□□ 1.03
USP40-212ENST00000473191 IGKV5-2P06315 115 aa21.5■■□□□ 1.03
USP40-212ENST00000473191 GPR101Q96P66 508 aaPredicted RBP21.5■■□□□ 1.03
USP40-212ENST00000473191 TMX4Q9H1E5 349 aaPredicted RBP21.5■■□□□ 1.03
USP40-212ENST00000473191 FANCIQ9NVI1 1328 aa21.5■■□□□ 1.03
USP40-212ENST00000473191 PI4KAP2A4QPH2 592 aa21.49■■□□□ 1.03
USP40-212ENST00000473191 GPSM2P81274 684 aa21.49■■□□□ 1.03
USP40-212ENST00000473191 FMR1Q06787 632 aaKnown RBP eCLIP21.49■■□□□ 1.03
USP40-212ENST00000473191 KIAA2012Q0VF49 1180 aa21.49■■□□□ 1.03
USP40-212ENST00000473191 PI4KAP1Q8N8J0 262 aa21.49■■□□□ 1.03
USP40-212ENST00000473191 CCDC191Q8NCU4 936 aa21.49■■□□□ 1.03
USP40-212ENST00000473191 SUPT20HQ8NEM7 779 aa21.48■■□□□ 1.03
USP40-212ENST00000473191 CWC25Q9NXE8 425 aaPredicted RBP21.48■■□□□ 1.03
USP40-212ENST00000473191 POLLQ9UGP5 575 aa21.48■■□□□ 1.03
USP40-212ENST00000473191 MKRN1Q9UHC7 482 aaKnown RBP21.48■■□□□ 1.03
USP40-212ENST00000473191 ZNRF3Q9ULT6 936 aa21.48■■□□□ 1.03
USP40-212ENST00000473191 IL16Q14005 1332 aa21.48■■□□□ 1.03
USP40-212ENST00000473191 RAD17O75943 681 aa21.47■■□□□ 1.03
USP40-212ENST00000473191 PCCAP05165 728 aaPredicted RBP21.47■■□□□ 1.03
USP40-212ENST00000473191 CWF19L2Q2TBE0 894 aaKnown RBP21.47■■□□□ 1.03
USP40-212ENST00000473191 KSR2Q6VAB6 950 aa21.47■■□□□ 1.03
USP40-212ENST00000473191 FAM9BQ8IZU0 186 aa21.47■■□□□ 1.03
USP40-212ENST00000473191 CREBZFQ9NS37 354 aa21.47■■□□□ 1.03
USP40-212ENST00000473191 NSFL1CQ9UNZ2 370 aaKnown RBP21.47■■□□□ 1.03
USP40-212ENST00000473191 SHTN1A0MZ66 631 aa21.46■■□□□ 1.03
USP40-212ENST00000473191 SLC4A2P04920 1241 aa21.46■■□□□ 1.03
USP40-212ENST00000473191 PNMA8AQ86V59 439 aaPredicted RBP21.46■■□□□ 1.03
USP40-212ENST00000473191 CNTROBQ8N137 903 aa21.46■■□□□ 1.03
USP40-212ENST00000473191 VPS33BQ9H267 617 aa21.46■■□□□ 1.03
USP40-212ENST00000473191 RIMBP2O15034 1052 aa21.45■■□□□ 1.02
USP40-212ENST00000473191 DDX58O95786 925 aaKnown RBP21.45■■□□□ 1.02
USP40-212ENST00000473191 LMOD1P29536 600 aaPredicted RBP21.45■■□□□ 1.02
USP40-212ENST00000473191 RPS8P62241 208 aaKnown RBP21.45■■□□□ 1.02
USP40-212ENST00000473191 GMPSP49915 693 aaPredicted RBP21.44■■□□□ 1.02
USP40-212ENST00000473191 EXOSC9Q06265 439 aaKnown RBP21.44■■□□□ 1.02
USP40-212ENST00000473191 NCBP3Q53F19 620 aaKnown RBP21.44■■□□□ 1.02
USP40-212ENST00000473191 TMC4Q7Z404 712 aa21.44■■□□□ 1.02
USP40-212ENST00000473191 STK31Q9BXU1 1019 aa21.44■■□□□ 1.02
USP40-212ENST00000473191 DBNDD1Q9H9R9 158 aa21.44■■□□□ 1.02
USP40-212ENST00000473191 KCNQ5Q9NR82 932 aa21.44■■□□□ 1.02
USP40-212ENST00000473191 GPRC5DQ9NZD1 345 aa21.44■■□□□ 1.02
USP40-212ENST00000473191 PDE8AO60658 829 aa21.43■■□□□ 1.02
USP40-212ENST00000473191 VAMP4O75379 141 aa21.43■■□□□ 1.02
USP40-212ENST00000473191 CIAPIN1Q6FI81 312 aa21.43■■□□□ 1.02
USP40-212ENST00000473191 WTIPA6NIX2 430 aaPredicted RBP21.42■■□□□ 1.02
USP40-212ENST00000473191 NEURL1BA8MQ27 555 aa21.42■■□□□ 1.02
USP40-212ENST00000473191 C6orf229H3BNL8 230 aa21.42■■□□□ 1.02
USP40-212ENST00000473191 DOK7Q18PE1 504 aa21.42■■□□□ 1.02
USP40-212ENST00000473191 WASHC4Q2M389 1173 aa21.42■■□□□ 1.02
USP40-212ENST00000473191 WDR63Q8IWG1 891 aa21.42■■□□□ 1.02
USP40-212ENST00000473191 TBC1D16Q8TBP0 767 aa21.42■■□□□ 1.02
USP40-212ENST00000473191 ZBTB12Q9Y330 459 aaPredicted RBP21.42■■□□□ 1.02
USP40-212ENST00000473191 TRAF5O00463 557 aa21.41■■□□□ 1.02
USP40-212ENST00000473191 FLIIQ13045 1269 aa21.41■■□□□ 1.02
USP40-212ENST00000473191 CDHR2Q9BYE9 1310 aa21.4■■□□□ 1.02
USP40-212ENST00000473191 TMEM88BA6NKF7 163 aa21.4■■□□□ 1.02
USP40-212ENST00000473191 HIRAP54198 1017 aaPredicted RBP21.4■■□□□ 1.02
USP40-212ENST00000473191 CCDC152Q4G0S7 254 aa21.4■■□□□ 1.02
USP40-212ENST00000473191 IFFO2Q5TF58 517 aa21.4■■□□□ 1.02
USP40-212ENST00000473191 CNTNAP1P78357 1384 aa21.39■■□□□ 1.02
USP40-212ENST00000473191 SPEF2Q9C093 1822 aa21.39■■□□□ 1.02
USP40-212ENST00000473191 PSMD14O00487 310 aa21.39■■□□□ 1.01
USP40-212ENST00000473191 HSPA1AP0DMV8 641 aaKnown RBP21.39■■□□□ 1.01
USP40-212ENST00000473191 HSPA1BP0DMV9 641 aaKnown RBP21.39■■□□□ 1.01
USP40-212ENST00000473191 CTSWP56202 376 aa21.39■■□□□ 1.01
USP40-212ENST00000473191 COL13A1Q5TAT6 717 aaPredicted RBP21.39■■□□□ 1.01
USP40-212ENST00000473191 USP50Q70EL3 339 aaPredicted RBP21.39■■□□□ 1.01
USP40-212ENST00000473191 TTLL11Q8NHH1 800 aa21.39■■□□□ 1.01
USP40-212ENST00000473191 TRPM4Q8TD43 1214 aa21.39■■□□□ 1.01
USP40-212ENST00000473191 ADARB2Q9NS39 739 aaKnown RBP21.39■■□□□ 1.01
USP40-212ENST00000473191 RTL9Q8NET4 1388 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms