RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 WDR17Q8IZU2 1322 aa16.38■□□□□ 0.21
CCDC88A-211ENST00000471947 DDB1Q16531 1140 aa16.37■□□□□ 0.21
CCDC88A-211ENST00000471947 DZIP3Q86Y13 1208 aaKnown RBP16.37■□□□□ 0.21
CCDC88A-211ENST00000471947 REREQ9P2R6 1566 aa16.37■□□□□ 0.21
CCDC88A-211ENST00000471947 GOLGB1Q14789 3259 aaKnown RBP16.37■□□□□ 0.21
CCDC88A-211ENST00000471947 GNL2Q13823 731 aaKnown RBP16.37■□□□□ 0.21
CCDC88A-211ENST00000471947 RUFY3Q7L099 469 aa16.37■□□□□ 0.21
CCDC88A-211ENST00000471947 CCDC171Q6TFL3 1326 aa16.37■□□□□ 0.21
CCDC88A-211ENST00000471947 VPS37DQ86XT2 251 aa16.37■□□□□ 0.21
CCDC88A-211ENST00000471947 BABAM1Q9NWV8 329 aa16.37■□□□□ 0.21
CCDC88A-211ENST00000471947 MEGF6O75095 1541 aa16.37■□□□□ 0.21
CCDC88A-211ENST00000471947 JAK2O60674 1132 aa16.36■□□□□ 0.21
CCDC88A-211ENST00000471947 USP48Q86UV5 1035 aa16.36■□□□□ 0.21
CCDC88A-211ENST00000471947 CWC22Q9HCG8 908 aaKnown RBP16.36■□□□□ 0.21
CCDC88A-211ENST00000471947 SLIT1O75093 1534 aa16.36■□□□□ 0.21
CCDC88A-211ENST00000471947 MEX3CQ5U5Q3 659 aaKnown RBP16.36■□□□□ 0.21
CCDC88A-211ENST00000471947 OTUD7BQ6GQQ9 843 aa16.36■□□□□ 0.21
CCDC88A-211ENST00000471947 LSG1Q9H089 658 aaKnown RBP16.36■□□□□ 0.21
CCDC88A-211ENST00000471947 OSBPL3Q9H4L5 887 aa16.36■□□□□ 0.21
CCDC88A-211ENST00000471947 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.36■□□□□ 0.21
CCDC88A-211ENST00000471947 SYT1P21579 422 aa16.36■□□□□ 0.21
CCDC88A-211ENST00000471947 HSPA4P34932 840 aa16.36■□□□□ 0.21
CCDC88A-211ENST00000471947 CKAP2LQ8IYA6 745 aa16.36■□□□□ 0.21
CCDC88A-211ENST00000471947 KCNQ2O43526 872 aa16.35■□□□□ 0.21
CCDC88A-211ENST00000471947 STX6O43752 255 aa16.35■□□□□ 0.21
CCDC88A-211ENST00000471947 GPHNQ9NQX3 736 aaPredicted RBP16.35■□□□□ 0.21
CCDC88A-211ENST00000471947 RAD50Q92878 1312 aa16.35■□□□□ 0.21
CCDC88A-211ENST00000471947 KIF24Q5T7B8 1368 aa16.35■□□□□ 0.21
CCDC88A-211ENST00000471947 IRS4O14654 1257 aaPredicted RBP16.35■□□□□ 0.21
CCDC88A-211ENST00000471947 APOBRQ0VD83 1088 aa16.35■□□□□ 0.21
CCDC88A-211ENST00000471947 ZSCAN23Q3MJ62 389 aa16.35■□□□□ 0.21
CCDC88A-211ENST00000471947 PAG1Q9NWQ8 432 aa16.35■□□□□ 0.21
CCDC88A-211ENST00000471947 STAP2Q9UGK3 403 aa16.35■□□□□ 0.21
CCDC88A-211ENST00000471947 KDM4FA0A1W2PPD8 638 aa16.35■□□□□ 0.21
CCDC88A-211ENST00000471947 UBAP1LF5GYI3 381 aa16.35■□□□□ 0.21
CCDC88A-211ENST00000471947 SLC27A2O14975 620 aa16.35■□□□□ 0.21
CCDC88A-211ENST00000471947 ZDHHC9Q9Y397 364 aa16.35■□□□□ 0.21
CCDC88A-211ENST00000471947 CPLX1O14810 134 aa16.34■□□□□ 0.21
CCDC88A-211ENST00000471947 ME3Q16798 604 aa16.34■□□□□ 0.21
CCDC88A-211ENST00000471947 GIMAP6Q6P9H5 292 aa16.34■□□□□ 0.21
CCDC88A-211ENST00000471947 NFXL1Q6ZNB6 911 aa16.34■□□□□ 0.21
CCDC88A-211ENST00000471947 Q6ZUG5 572 aa16.34■□□□□ 0.21
CCDC88A-211ENST00000471947 DRC7Q8IY82 874 aa16.34■□□□□ 0.21
CCDC88A-211ENST00000471947 ISY1Q9ULR0 285 aaKnown RBP16.34■□□□□ 0.21
CCDC88A-211ENST00000471947 LMTK3Q96Q04 1460 aa16.34■□□□□ 0.21
CCDC88A-211ENST00000471947 MSNP26038 577 aaKnown RBP16.34■□□□□ 0.21
CCDC88A-211ENST00000471947 GREM2Q9H772 168 aa16.34■□□□□ 0.21
CCDC88A-211ENST00000471947 WWC3Q9ULE0 1092 aa16.34■□□□□ 0.21
CCDC88A-211ENST00000471947 ITGA6P23229 1130 aa16.34■□□□□ 0.21
CCDC88A-211ENST00000471947 PSMA5P28066 241 aa16.34■□□□□ 0.21
CCDC88A-211ENST00000471947 CHAF1AQ13111 956 aaPredicted RBP16.34■□□□□ 0.21
CCDC88A-211ENST00000471947 RALYLQ86SE5 291 aaKnown RBP16.34■□□□□ 0.21
CCDC88A-211ENST00000471947 MCM2P49736 904 aa16.33■□□□□ 0.21
CCDC88A-211ENST00000471947 MIGA1Q8NAN2 632 aa16.33■□□□□ 0.21
CCDC88A-211ENST00000471947 SPC24Q8NBT2 197 aa16.33■□□□□ 0.21
CCDC88A-211ENST00000471947 NIP7Q9Y221 180 aaKnown RBP eCLIP16.33■□□□□ 0.21
CCDC88A-211ENST00000471947 WDR33Q9C0J8 1336 aaKnown RBP16.33■□□□□ 0.21
CCDC88A-211ENST00000471947 ZAP70P43403 619 aa16.33■□□□□ 0.2
CCDC88A-211ENST00000471947 TMEM63CQ9P1W3 806 aa16.33■□□□□ 0.2
CCDC88A-211ENST00000471947 TPCN1Q9ULQ1 816 aa16.33■□□□□ 0.2
CCDC88A-211ENST00000471947 PIK3C2AO00443 1686 aa16.33■□□□□ 0.2
CCDC88A-211ENST00000471947 NEK1Q96PY6 1258 aa16.32■□□□□ 0.2
CCDC88A-211ENST00000471947 SEC31BQ9NQW1 1179 aa16.32■□□□□ 0.2
CCDC88A-211ENST00000471947 LMBRD1Q9NUN5 540 aa16.32■□□□□ 0.2
CCDC88A-211ENST00000471947 TTC41PQ6P2S7 1318 aa16.32■□□□□ 0.2
CCDC88A-211ENST00000471947 EYA2O00167 538 aa16.32■□□□□ 0.2
CCDC88A-211ENST00000471947 ATP2B3Q16720 1220 aa16.32■□□□□ 0.2
CCDC88A-211ENST00000471947 GPT2Q8TD30 523 aa16.32■□□□□ 0.2
CCDC88A-211ENST00000471947 ZNF830Q96NB3 372 aaPredicted RBP16.32■□□□□ 0.2
CCDC88A-211ENST00000471947 SF3A1Q15459 793 aaKnown RBP16.32■□□□□ 0.2
CCDC88A-211ENST00000471947 XAGE2Q96GT9 111 aa16.32■□□□□ 0.2
CCDC88A-211ENST00000471947 ERCC4Q92889 916 aaPredicted RBP16.31■□□□□ 0.2
CCDC88A-211ENST00000471947 RRAGDQ9NQL2 400 aaPredicted RBP16.31■□□□□ 0.2
CCDC88A-211ENST00000471947 MINDY4BA8MYZ0 360 aa16.31■□□□□ 0.2
CCDC88A-211ENST00000471947 POLR3DP05423 398 aaPredicted RBP16.31■□□□□ 0.2
CCDC88A-211ENST00000471947 SLC9C2Q5TAH2 1124 aa16.31■□□□□ 0.2
CCDC88A-211ENST00000471947 ZKSCAN3Q9BRR0 538 aa16.3■□□□□ 0.2
CCDC88A-211ENST00000471947 INCENPQ9NQS7 918 aa16.3■□□□□ 0.2
CCDC88A-211ENST00000471947 KDM6AO15550 1401 aaPredicted RBP16.3■□□□□ 0.2
CCDC88A-211ENST00000471947 A0A087WWV3 80 aa16.3■□□□□ 0.2
CCDC88A-211ENST00000471947 ANKRD18BA2A2Z9 1011 aa16.3■□□□□ 0.2
CCDC88A-211ENST00000471947 SCARF1Q14162 830 aa16.3■□□□□ 0.2
CCDC88A-211ENST00000471947 RBSNQ9H1K0 784 aa16.3■□□□□ 0.2
CCDC88A-211ENST00000471947 ATG3Q9NT62 314 aa16.3■□□□□ 0.2
CCDC88A-211ENST00000471947 CARD10Q9BWT7 1032 aa16.3■□□□□ 0.2
CCDC88A-211ENST00000471947 HIP1O00291 1037 aa16.29■□□□□ 0.2
CCDC88A-211ENST00000471947 MCMDC2Q4G0Z9 681 aa16.29■□□□□ 0.2
CCDC88A-211ENST00000471947 LRP2BPQ9P2M1 347 aa16.29■□□□□ 0.2
CCDC88A-211ENST00000471947 MON2Q7Z3U7 1717 aa16.29■□□□□ 0.2
CCDC88A-211ENST00000471947 ANKRD26Q9UPS8 1709 aa16.29■□□□□ 0.2
CCDC88A-211ENST00000471947 TCIRG1Q13488 830 aa16.29■□□□□ 0.2
CCDC88A-211ENST00000471947 MYL10Q9BUA6 226 aa16.29■□□□□ 0.2
CCDC88A-211ENST00000471947 SETD1AO15047 1707 aaKnown RBP16.29■□□□□ 0.2
CCDC88A-211ENST00000471947 IL15P40933 162 aaPredicted RBP16.29■□□□□ 0.2
CCDC88A-211ENST00000471947 TRDNQ13061 729 aa16.29■□□□□ 0.2
CCDC88A-211ENST00000471947 KLHL40Q2TBA0 621 aa16.29■□□□□ 0.2
CCDC88A-211ENST00000471947 CDC37L1Q7L3B6 337 aa16.29■□□□□ 0.2
CCDC88A-211ENST00000471947 NUP133Q8WUM0 1156 aa16.29■□□□□ 0.2
CCDC88A-211ENST00000471947 GJB4Q9NTQ9 266 aa16.28■□□□□ 0.2
CCDC88A-211ENST00000471947 RAI14Q9P0K7 980 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms