RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 CCDC88AQ3V6T2 1871 aa7.89□□□□□ -1.15
HMGB1-207ENST00000468384 ANKRD36BQ8N2N9 1353 aa7.89□□□□□ -1.15
HMGB1-207ENST00000468384 USP47Q96K76 1375 aa7.89□□□□□ -1.15
HMGB1-207ENST00000468384 KMT2BQ9UMN6 2715 aaPredicted RBP7.89□□□□□ -1.15
HMGB1-207ENST00000468384 ZFHX4Q86UP3 3567 aa7.88□□□□□ -1.15
HMGB1-207ENST00000468384 NBR1Q14596 966 aa7.88□□□□□ -1.15
HMGB1-207ENST00000468384 NLGN1Q8N2Q7 840 aa7.88□□□□□ -1.15
HMGB1-207ENST00000468384 ZNF296Q8WUU4 475 aaPredicted RBP7.88□□□□□ -1.15
HMGB1-207ENST00000468384 PARP3Q9Y6F1 533 aa7.88□□□□□ -1.15
HMGB1-207ENST00000468384 SPTBN4Q9H254 2564 aa7.88□□□□□ -1.15
HMGB1-207ENST00000468384 RBBP6Q7Z6E9 1792 aaKnown RBP7.87□□□□□ -1.15
HMGB1-207ENST00000468384 RIOK3O14730 519 aaKnown RBP7.87□□□□□ -1.15
HMGB1-207ENST00000468384 AVPP01185 164 aa7.87□□□□□ -1.15
HMGB1-207ENST00000468384 TMF1P82094 1093 aa7.87□□□□□ -1.15
HMGB1-207ENST00000468384 KIF23Q02241 960 aaPredicted RBP7.87□□□□□ -1.15
HMGB1-207ENST00000468384 MAP3K11Q16584 847 aa7.87□□□□□ -1.15
HMGB1-207ENST00000468384 GPAT2Q6NUI2 795 aa7.87□□□□□ -1.15
HMGB1-207ENST00000468384 ABTB2Q8N961 1025 aa7.87□□□□□ -1.15
HMGB1-207ENST00000468384 DPF3Q92784 378 aa7.87□□□□□ -1.15
HMGB1-207ENST00000468384 SIRT1Q96EB6 747 aa7.87□□□□□ -1.15
HMGB1-207ENST00000468384 C1QTNF1Q9BXJ1 281 aa7.87□□□□□ -1.15
HMGB1-207ENST00000468384 INSRP06213 1382 aa7.86□□□□□ -1.15
HMGB1-207ENST00000468384 ANKRD30AQ9BXX3 1397 aa7.86□□□□□ -1.15
HMGB1-207ENST00000468384 UBR3Q6ZT12 1888 aa7.86□□□□□ -1.15
HMGB1-207ENST00000468384 PPP1R37O75864 691 aa7.86□□□□□ -1.15
HMGB1-207ENST00000468384 CELF2O95319 508 aaKnown RBP7.86□□□□□ -1.15
HMGB1-207ENST00000468384 TMEM132EQ6IEE7 984 aa7.86□□□□□ -1.15
HMGB1-207ENST00000468384 GUCD1Q96NT3 240 aa7.86□□□□□ -1.15
HMGB1-207ENST00000468384 FASNP49327 2511 aaKnown RBP7.86□□□□□ -1.15
HMGB1-207ENST00000468384 C4AP0C0L4 1744 aa7.86□□□□□ -1.15
HMGB1-207ENST00000468384 C4BP0C0L5 1744 aa7.86□□□□□ -1.15
HMGB1-207ENST00000468384 SAFB2Q14151 953 aaKnown RBP eCLIP7.85□□□□□ -1.15
HMGB1-207ENST00000468384 NKX1-1Q15270 411 aaPredicted RBP7.85□□□□□ -1.15
HMGB1-207ENST00000468384 FLNBO75369 2602 aaKnown RBP7.85□□□□□ -1.15
HMGB1-207ENST00000468384 SCN11AQ9UI33 1791 aa7.84□□□□□ -1.15
HMGB1-207ENST00000468384 TRPM7Q96QT4 1865 aa7.84□□□□□ -1.15
HMGB1-207ENST00000468384 IL2RBP14784 551 aa7.84□□□□□ -1.15
HMGB1-207ENST00000468384 COL9A2Q14055 689 aaPredicted RBP7.84□□□□□ -1.15
HMGB1-207ENST00000468384 NLRP13Q86W25 1043 aa7.84□□□□□ -1.15
HMGB1-207ENST00000468384 DDX54Q8TDD1 881 aaKnown RBP7.84□□□□□ -1.15
HMGB1-207ENST00000468384 CHIC2Q9UKJ5 165 aa7.84□□□□□ -1.15
HMGB1-207ENST00000468384 FAM155AB1AL88 458 aaPredicted RBP7.83□□□□□ -1.16
HMGB1-207ENST00000468384 COPS2P61201 443 aa7.83□□□□□ -1.16
HMGB1-207ENST00000468384 MAFAQ8NHW3 353 aaPredicted RBP7.83□□□□□ -1.16
HMGB1-207ENST00000468384 LRFN3Q9BTN0 628 aa7.83□□□□□ -1.16
HMGB1-207ENST00000468384 DICER1Q9UPY3 1922 aaKnown RBP7.83□□□□□ -1.16
HMGB1-207ENST00000468384 RNF123Q5XPI4 1314 aa7.82□□□□□ -1.16
HMGB1-207ENST00000468384 TTC21AQ8NDW8 1320 aa7.82□□□□□ -1.16
HMGB1-207ENST00000468384 BTBD11A6QL63 1104 aa7.82□□□□□ -1.16
HMGB1-207ENST00000468384 BICDL1Q6ZP65 573 aa7.82□□□□□ -1.16
HMGB1-207ENST00000468384 TRIM47Q96LD4 638 aa7.82□□□□□ -1.16
HMGB1-207ENST00000468384 CSRNP1Q96S65 589 aa7.82□□□□□ -1.16
HMGB1-207ENST00000468384 PKD2L1Q9P0L9 805 aa7.82□□□□□ -1.16
HMGB1-207ENST00000468384 TAF1LQ8IZX4 1826 aa7.82□□□□□ -1.16
HMGB1-207ENST00000468384 GPR179Q6PRD1 2367 aa7.82□□□□□ -1.16
HMGB1-207ENST00000468384 CFAP54Q96N23 3096 aa7.81□□□□□ -1.16
HMGB1-207ENST00000468384 FOXC1Q12948 553 aa7.81□□□□□ -1.16
HMGB1-207ENST00000468384 TTLL6Q8N841 843 aa7.81□□□□□ -1.16
HMGB1-207ENST00000468384 ATP13A2Q9NQ11 1180 aa7.81□□□□□ -1.16
HMGB1-207ENST00000468384 GPHNQ9NQX3 736 aaPredicted RBP7.81□□□□□ -1.16
HMGB1-207ENST00000468384 KIF7Q2M1P5 1343 aa7.8□□□□□ -1.16
HMGB1-207ENST00000468384 YTHDC2Q9H6S0 1430 aaKnown RBP7.8□□□□□ -1.16
HMGB1-207ENST00000468384 PPLO60437 1756 aa7.8□□□□□ -1.16
HMGB1-207ENST00000468384 ZBTB7BO15156 539 aaPredicted RBP7.8□□□□□ -1.16
HMGB1-207ENST00000468384 GNPATO15228 680 aa7.8□□□□□ -1.16
HMGB1-207ENST00000468384 GTPBP6O43824 516 aaPredicted RBP7.8□□□□□ -1.16
HMGB1-207ENST00000468384 HUNKP57058 714 aa7.8□□□□□ -1.16
HMGB1-207ENST00000468384 LRIT3Q3SXY7 679 aa7.8□□□□□ -1.16
HMGB1-207ENST00000468384 ARMC5Q96C12 935 aa7.8□□□□□ -1.16
HMGB1-207ENST00000468384 STAP2Q9UGK3 403 aa7.8□□□□□ -1.16
HMGB1-207ENST00000468384 EIF3AQ14152 1382 aaKnown RBP7.8□□□□□ -1.16
HMGB1-207ENST00000468384 ZNF541Q9H0D2 1346 aa7.79□□□□□ -1.16
HMGB1-207ENST00000468384 IRS2Q9Y4H2 1338 aa7.79□□□□□ -1.16
HMGB1-207ENST00000468384 TBC1D8O95759 1140 aa7.79□□□□□ -1.16
HMGB1-207ENST00000468384 GYS1P13807 737 aa7.79□□□□□ -1.16
HMGB1-207ENST00000468384 SRPK2P78362 688 aaKnown RBP7.79□□□□□ -1.16
HMGB1-207ENST00000468384 PRAM1Q96QH2 718 aa7.79□□□□□ -1.16
HMGB1-207ENST00000468384 KRTAP4-7Q9BYR0 210 aa7.79□□□□□ -1.16
HMGB1-207ENST00000468384 NR2E3Q9Y5X4 410 aa7.79□□□□□ -1.16
HMGB1-207ENST00000468384 POLR3AO14802 1390 aaPredicted RBP7.79□□□□□ -1.16
HMGB1-207ENST00000468384 PALLDQ8WX93 1383 aa7.79□□□□□ -1.16
HMGB1-207ENST00000468384 AKAP11Q9UKA4 1901 aa7.79□□□□□ -1.16
HMGB1-207ENST00000468384 RPGRIP1LQ68CZ1 1315 aa7.78□□□□□ -1.16
HMGB1-207ENST00000468384 LTBP3Q9NS15 1303 aa7.78□□□□□ -1.16
HMGB1-207ENST00000468384 ANKRD50Q9ULJ7 1429 aa7.78□□□□□ -1.16
HMGB1-207ENST00000468384 GPR25O00155 361 aa7.78□□□□□ -1.16
HMGB1-207ENST00000468384 RGMBQ6NW40 437 aa7.78□□□□□ -1.16
HMGB1-207ENST00000468384 SAMD7Q7Z3H4 446 aa7.78□□□□□ -1.16
HMGB1-207ENST00000468384 IRF7Q92985 503 aa7.78□□□□□ -1.16
HMGB1-207ENST00000468384 CCDC102AQ96A19 550 aa7.78□□□□□ -1.16
HMGB1-207ENST00000468384 DOT1LQ8TEK3 1739 aa7.78□□□□□ -1.16
HMGB1-207ENST00000468384 DAPK1P53355 1430 aa7.78□□□□□ -1.16
HMGB1-207ENST00000468384 ZNF292O60281 2723 aa7.77□□□□□ -1.17
HMGB1-207ENST00000468384 WTIPA6NIX2 430 aaPredicted RBP7.77□□□□□ -1.17
HMGB1-207ENST00000468384 SMCPP49901 116 aaPredicted RBP7.77□□□□□ -1.17
HMGB1-207ENST00000468384 CTC1Q2NKJ3 1217 aa7.77□□□□□ -1.17
HMGB1-207ENST00000468384 NOM1Q5C9Z4 860 aaKnown RBP7.77□□□□□ -1.17
HMGB1-207ENST00000468384 LINC00116Q8NCU8 138 aa7.77□□□□□ -1.17
HMGB1-207ENST00000468384 TAOK3Q9H2K8 898 aa7.77□□□□□ -1.17
HMGB1-207ENST00000468384 ZNF408Q9H9D4 720 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms