RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 ZNF219Q9P2Y4 722 aaPredicted RBP35.39■■■■□ 3.26
SMARCC1-203ENST00000454240 UTYO14607 1347 aa35.38■■■■□ 3.25
SMARCC1-203ENST00000454240 TRIM27P14373 513 aa35.38■■■■□ 3.25
SMARCC1-203ENST00000454240 CCT4P50991 539 aaKnown RBP35.38■■■■□ 3.25
SMARCC1-203ENST00000454240 CTSWP56202 376 aa35.37■■■■□ 3.25
SMARCC1-203ENST00000454240 GRAPQ13588 217 aa35.36■■■■□ 3.25
SMARCC1-203ENST00000454240 CCDC152Q4G0S7 254 aa35.36■■■■□ 3.25
SMARCC1-203ENST00000454240 ZKSCAN2Q63HK3 967 aa35.36■■■■□ 3.25
SMARCC1-203ENST00000454240 TTLL11Q8NHH1 800 aa35.36■■■■□ 3.25
SMARCC1-203ENST00000454240 GRAPLQ8TC17 118 aaPredicted RBP35.36■■■■□ 3.25
SMARCC1-203ENST00000454240 SBF1O95248 1867 aa35.35■■■■□ 3.25
SMARCC1-203ENST00000454240 BBOX1O75936 387 aa35.35■■■■□ 3.25
SMARCC1-203ENST00000454240 SOGA3Q5TF21 947 aa35.35■■■■□ 3.25
SMARCC1-203ENST00000454240 RCAN3Q9UKA8 241 aa35.34■■■■□ 3.25
SMARCC1-203ENST00000454240 TNNQ9UQP3 1299 aa35.34■■■■□ 3.25
SMARCC1-203ENST00000454240 PPEF1O14829 653 aaPredicted RBP35.33■■■■□ 3.25
SMARCC1-203ENST00000454240 NBPF7P0C2Y1 421 aaPredicted RBP35.33■■■■□ 3.25
SMARCC1-203ENST00000454240 INTS3Q68E01 1043 aaKnown RBP35.33■■■■□ 3.25
SMARCC1-203ENST00000454240 USP44Q9H0E7 712 aa35.33■■■■□ 3.25
SMARCC1-203ENST00000454240 COL4A1P02462 1669 aa35.33■■■■□ 3.25
SMARCC1-203ENST00000454240 CSF1RP07333 972 aa35.32■■■■□ 3.24
SMARCC1-203ENST00000454240 FOXO4P98177 505 aa35.32■■■■□ 3.24
SMARCC1-203ENST00000454240 OLFM4Q6UX06 510 aa35.32■■■■□ 3.24
SMARCC1-203ENST00000454240 CCDC93Q567U6 631 aa35.31■■■■□ 3.24
SMARCC1-203ENST00000454240 CELF1Q92879 486 aaKnown RBP35.31■■■■□ 3.24
SMARCC1-203ENST00000454240 CCDC85AQ96PX6 553 aaPredicted RBP35.31■■■■□ 3.24
SMARCC1-203ENST00000454240 SEC31BQ9NQW1 1179 aa35.31■■■■□ 3.24
SMARCC1-203ENST00000454240 CCDC88AQ3V6T2 1871 aa35.31■■■■□ 3.24
SMARCC1-203ENST00000454240 RTL9Q8NET4 1388 aa35.3■■■■□ 3.24
SMARCC1-203ENST00000454240 NFKBIEO00221 500 aa35.3■■■■□ 3.24
SMARCC1-203ENST00000454240 CC2D2BQ6DHV5 1058 aa35.3■■■■□ 3.24
SMARCC1-203ENST00000454240 ATP6V0A2Q9Y487 856 aa35.3■■■■□ 3.24
SMARCC1-203ENST00000454240 SNED1Q8TER0 1413 aa35.3■■■■□ 3.24
SMARCC1-203ENST00000454240 GREM2Q9H772 168 aa35.29■■■■□ 3.24
SMARCC1-203ENST00000454240 CLUAP1Q96AJ1 413 aa35.28■■■■□ 3.24
SMARCC1-203ENST00000454240 KAZALD1Q96I82 304 aa35.28■■■■□ 3.24
SMARCC1-203ENST00000454240 SUCLG2Q96I99 432 aa35.28■■■■□ 3.24
SMARCC1-203ENST00000454240 RPS8P62241 208 aaKnown RBP35.27■■■■□ 3.24
SMARCC1-203ENST00000454240 RASSF7Q02833 373 aa35.27■■■■□ 3.24
SMARCC1-203ENST00000454240 EPHA10Q5JZY3 1008 aa35.27■■■■□ 3.24
SMARCC1-203ENST00000454240 TMC4Q7Z404 712 aa35.27■■■■□ 3.24
SMARCC1-203ENST00000454240 SP8Q8IXZ3 490 aa35.27■■■■□ 3.24
SMARCC1-203ENST00000454240 RTKN2Q8IZC4 609 aa35.27■■■■□ 3.24
SMARCC1-203ENST00000454240 LRRC37AA6NMS7 1700 aa35.26■■■■□ 3.24
SMARCC1-203ENST00000454240 SLC51AQ86UW1 340 aa35.26■■■■□ 3.24
SMARCC1-203ENST00000454240 LTBP3Q9NS15 1303 aa35.26■■■■□ 3.23
SMARCC1-203ENST00000454240 GRIPAP1Q4V328 841 aa35.25■■■■□ 3.23
SMARCC1-203ENST00000454240 PRELPP51888 382 aa35.23■■■■□ 3.23
SMARCC1-203ENST00000454240 LMBR1LQ6UX01 489 aa35.23■■■■□ 3.23
SMARCC1-203ENST00000454240 TAOK3Q9H2K8 898 aa35.23■■■■□ 3.23
SMARCC1-203ENST00000454240 FAM161AQ3B820 660 aa35.22■■■■□ 3.23
SMARCC1-203ENST00000454240 DZIP1LQ8IYY4 767 aaKnown RBP35.22■■■■□ 3.23
SMARCC1-203ENST00000454240 CDC5LQ99459 802 aaKnown RBP35.22■■■■□ 3.23
SMARCC1-203ENST00000454240 TMX4Q9H1E5 349 aaPredicted RBP35.22■■■■□ 3.23
SMARCC1-203ENST00000454240 SPEF2Q9C093 1822 aa35.22■■■■□ 3.23
SMARCC1-203ENST00000454240 ITGA6P23229 1130 aa35.21■■■■□ 3.23
SMARCC1-203ENST00000454240 FKBP4Q02790 459 aaKnown RBP eCLIP35.21■■■■□ 3.23
SMARCC1-203ENST00000454240 TMEM57Q8N5G2 664 aa35.21■■■■□ 3.23
SMARCC1-203ENST00000454240 DICER1Q9UPY3 1922 aaKnown RBP35.21■■■■□ 3.23
SMARCC1-203ENST00000454240 RABL6Q3YEC7 729 aaPredicted RBP35.2■■■■□ 3.23
SMARCC1-203ENST00000454240 ANKRD18AQ8IVF6 992 aa35.2■■■■□ 3.23
SMARCC1-203ENST00000454240 RLBP1P12271 317 aa35.19■■■■□ 3.22
SMARCC1-203ENST00000454240 LMNB1P20700 586 aa35.19■■■■□ 3.22
SMARCC1-203ENST00000454240 FTSJ3Q8IY81 847 aaKnown RBP35.19■■■■□ 3.22
SMARCC1-203ENST00000454240 PSMD1Q99460 953 aa35.19■■■■□ 3.22
SMARCC1-203ENST00000454240 MEIS3Q99687 375 aa35.19■■■■□ 3.22
SMARCC1-203ENST00000454240 BICC1Q9H694 974 aaKnown RBP35.19■■■■□ 3.22
SMARCC1-203ENST00000454240 UBTFL1P0CB47 393 aaPredicted RBP35.18■■■■□ 3.22
SMARCC1-203ENST00000454240 C9orf131Q5VYM1 1079 aa35.18■■■■□ 3.22
SMARCC1-203ENST00000454240 YY1P25490 414 aa35.17■■■■□ 3.22
SMARCC1-203ENST00000454240 ANKRD44Q8N8A2 993 aa35.17■■■■□ 3.22
SMARCC1-203ENST00000454240 ANKRD18BA2A2Z9 1011 aa35.16■■■■□ 3.22
SMARCC1-203ENST00000454240 IFIT5Q13325 482 aaKnown RBP35.16■■■■□ 3.22
SMARCC1-203ENST00000454240 CHMP3Q9Y3E7 222 aa35.16■■■■□ 3.22
SMARCC1-203ENST00000454240 BSDC1Q9NW68 430 aaPredicted RBP35.15■■■■□ 3.22
SMARCC1-203ENST00000454240 RNF181Q9P0P0 153 aa35.15■■■■□ 3.22
SMARCC1-203ENST00000454240 GNAI3P08754 354 aa35.14■■■■□ 3.22
SMARCC1-203ENST00000454240 MS4A1P11836 297 aa35.14■■■■□ 3.22
SMARCC1-203ENST00000454240 MPNDQ8N594 471 aa35.14■■■■□ 3.22
SMARCC1-203ENST00000454240 HDAC5Q9UQL6 1122 aa35.14■■■■□ 3.22
SMARCC1-203ENST00000454240 LTBP1Q14766 1721 aa35.14■■■■□ 3.22
SMARCC1-203ENST00000454240 PLIN1O60240 522 aa35.13■■■■□ 3.21
SMARCC1-203ENST00000454240 IGHMBP2P38935 993 aaKnown RBP35.13■■■■□ 3.21
SMARCC1-203ENST00000454240 CCDC57Q2TAC2 916 aa35.13■■■■□ 3.21
SMARCC1-203ENST00000454240 RTFDC1Q9BY42 306 aaPredicted RBP35.13■■■■□ 3.21
SMARCC1-203ENST00000454240 DPP8Q6V1X1 898 aaPredicted RBP35.12■■■■□ 3.21
SMARCC1-203ENST00000454240 ZNF277Q9NRM2 450 aaPredicted RBP35.12■■■■□ 3.21
SMARCC1-203ENST00000454240 PANK1Q8TE04 598 aa35.11■■■■□ 3.21
SMARCC1-203ENST00000454240 DUOX1Q9NRD9 1551 aa35.1■■■■□ 3.21
SMARCC1-203ENST00000454240 GPSM2P81274 684 aa35.1■■■■□ 3.21
SMARCC1-203ENST00000454240 NSFL1CQ9UNZ2 370 aaKnown RBP35.1■■■■□ 3.21
SMARCC1-203ENST00000454240 LRRFIP2Q9Y608 721 aaKnown RBP35.1■■■■□ 3.21
SMARCC1-203ENST00000454240 TIAM2Q8IVF5 1701 aa35.09■■■■□ 3.21
SMARCC1-203ENST00000454240 ITPRIPQ8IWB1 547 aa35.09■■■■□ 3.21
SMARCC1-203ENST00000454240 GOLGA6L2Q8N9W4 650 aaPredicted RBP35.09■■■■□ 3.21
SMARCC1-203ENST00000454240 MPHOSPH8Q99549 860 aa35.09■■■■□ 3.21
SMARCC1-203ENST00000454240 PODXL2Q9NZ53 605 aa35.09■■■■□ 3.21
SMARCC1-203ENST00000454240 MINPP1Q9UNW1 487 aa35.09■■■■□ 3.21
SMARCC1-203ENST00000454240 IARSP41252 1262 aaKnown RBP35.08■■■■□ 3.21
SMARCC1-203ENST00000454240 SUPT20HQ8NEM7 779 aa35.08■■■■□ 3.21
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms