RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 PDE8AO60658 829 aa31.54■■■□□ 2.64
RAPGEF1-206ENST00000438647 IARSP41252 1262 aaKnown RBP31.54■■■□□ 2.64
RAPGEF1-206ENST00000438647 SP8Q8IXZ3 490 aa31.54■■■□□ 2.64
RAPGEF1-206ENST00000438647 CDHR2Q9BYE9 1310 aa31.53■■■□□ 2.64
RAPGEF1-206ENST00000438647 CWF19L2Q2TBE0 894 aaKnown RBP31.53■■■□□ 2.64
RAPGEF1-206ENST00000438647 LINS1Q8NG48 757 aa31.52■■■□□ 2.64
RAPGEF1-206ENST00000438647 CCDC152Q4G0S7 254 aa31.51■■■□□ 2.63
RAPGEF1-206ENST00000438647 C16orf71Q8IYS4 520 aaPredicted RBP31.5■■■□□ 2.63
RAPGEF1-206ENST00000438647 RRAGCQ9HB90 399 aa31.5■■■□□ 2.63
RAPGEF1-206ENST00000438647 TOMM70O94826 608 aa31.49■■■□□ 2.63
RAPGEF1-206ENST00000438647 SUPT20HQ8NEM7 779 aa31.49■■■□□ 2.63
RAPGEF1-206ENST00000438647 JDP2Q8WYK2 163 aa31.49■■■□□ 2.63
RAPGEF1-206ENST00000438647 JARID2Q92833 1246 aaPredicted RBP31.49■■■□□ 2.63
RAPGEF1-206ENST00000438647 CDCA7LQ96GN5 454 aa31.49■■■□□ 2.63
RAPGEF1-206ENST00000438647 GCKRQ14397 625 aa31.48■■■□□ 2.63
RAPGEF1-206ENST00000438647 DPP8Q6V1X1 898 aaPredicted RBP31.47■■■□□ 2.63
RAPGEF1-206ENST00000438647 CELF1Q92879 486 aaKnown RBP31.47■■■□□ 2.63
RAPGEF1-206ENST00000438647 VPS33BQ9H267 617 aa31.47■■■□□ 2.63
RAPGEF1-206ENST00000438647 VEGFAP15692 232 aaPredicted RBP31.46■■■□□ 2.63
RAPGEF1-206ENST00000438647 TRMT2AQ8IZ69 625 aaKnown RBP31.46■■■□□ 2.63
RAPGEF1-206ENST00000438647 MPNDQ8N594 471 aa31.46■■■□□ 2.63
RAPGEF1-206ENST00000438647 H7C1W4 665 aa31.45■■■□□ 2.63
RAPGEF1-206ENST00000438647 RPS8P62241 208 aaKnown RBP31.45■■■□□ 2.63
RAPGEF1-206ENST00000438647 UBE3BQ7Z3V4 1068 aa31.45■■■□□ 2.63
RAPGEF1-206ENST00000438647 SLC51AQ86UW1 340 aa31.45■■■□□ 2.63
RAPGEF1-206ENST00000438647 LARGE2Q8N3Y3 721 aa31.45■■■□□ 2.63
RAPGEF1-206ENST00000438647 RTFDC1Q9BY42 306 aaPredicted RBP31.45■■■□□ 2.63
RAPGEF1-206ENST00000438647 F6X3S4 739 aa31.44■■■□□ 2.62
RAPGEF1-206ENST00000438647 CTSWP56202 376 aa31.44■■■□□ 2.62
RAPGEF1-206ENST00000438647 FZD9O00144 591 aa31.43■■■□□ 2.62
RAPGEF1-206ENST00000438647 CT47B1P0C2W7 299 aaPredicted RBP31.43■■■□□ 2.62
RAPGEF1-206ENST00000438647 TAF1P21675 1872 aa31.43■■■□□ 2.62
RAPGEF1-206ENST00000438647 PPIP5K2O43314 1243 aa31.42■■■□□ 2.62
RAPGEF1-206ENST00000438647 BEND3Q5T5X7 828 aa31.42■■■□□ 2.62
RAPGEF1-206ENST00000438647 WDR90Q96KV7 1748 aa31.41■■■□□ 2.62
RAPGEF1-206ENST00000438647 DDNO94850 711 aaPredicted RBP31.41■■■□□ 2.62
RAPGEF1-206ENST00000438647 MRPL50Q8N5N7 158 aaKnown RBP31.41■■■□□ 2.62
RAPGEF1-206ENST00000438647 RBM46Q8TBY0 533 aaKnown RBP31.41■■■□□ 2.62
RAPGEF1-206ENST00000438647 SEC31BQ9NQW1 1179 aa31.41■■■□□ 2.62
RAPGEF1-206ENST00000438647 LRRC37AA6NMS7 1700 aa31.41■■■□□ 2.62
RAPGEF1-206ENST00000438647 ALDH1L2Q3SY69 923 aa31.4■■■□□ 2.62
RAPGEF1-206ENST00000438647 NIM1KQ8IY84 436 aa31.4■■■□□ 2.62
RAPGEF1-206ENST00000438647 CCDC85AQ96PX6 553 aaPredicted RBP31.4■■■□□ 2.62
RAPGEF1-206ENST00000438647 PLA2G12BQ9BX93 195 aa31.4■■■□□ 2.62
RAPGEF1-206ENST00000438647 EIF6P56537 245 aaKnown RBP31.39■■■□□ 2.62
RAPGEF1-206ENST00000438647 TTLL11Q8NHH1 800 aa31.39■■■□□ 2.62
RAPGEF1-206ENST00000438647 SSH1Q8WYL5 1049 aa31.39■■■□□ 2.62
RAPGEF1-206ENST00000438647 CDC5LQ99459 802 aaKnown RBP31.39■■■□□ 2.62
RAPGEF1-206ENST00000438647 PTPRCP08575 1304 aa31.39■■■□□ 2.62
RAPGEF1-206ENST00000438647 AOC3Q16853 763 aa31.38■■■□□ 2.61
RAPGEF1-206ENST00000438647 SLC4A10Q6U841 1118 aa31.38■■■□□ 2.61
RAPGEF1-206ENST00000438647 ANKRD18AQ8IVF6 992 aa31.38■■■□□ 2.61
RAPGEF1-206ENST00000438647 NSFL1CQ9UNZ2 370 aaKnown RBP31.38■■■□□ 2.61
RAPGEF1-206ENST00000438647 ZNF541Q9H0D2 1346 aa31.38■■■□□ 2.61
RAPGEF1-206ENST00000438647 RTL9Q8NET4 1388 aa31.38■■■□□ 2.61
RAPGEF1-206ENST00000438647 IQCA1LA6NCM1 817 aa31.37■■■□□ 2.61
RAPGEF1-206ENST00000438647 CASP7P55210 303 aa31.37■■■□□ 2.61
RAPGEF1-206ENST00000438647 L3MBTL3Q96JM7 780 aaPredicted RBP31.37■■■□□ 2.61
RAPGEF1-206ENST00000438647 MYH3P11055 1940 aa31.37■■■□□ 2.61
RAPGEF1-206ENST00000438647 ALDH1L1O75891 902 aa31.36■■■□□ 2.61
RAPGEF1-206ENST00000438647 KIAA2012Q0VF49 1180 aa31.36■■■□□ 2.61
RAPGEF1-206ENST00000438647 SRCIN1Q9C0H9 1055 aa31.36■■■□□ 2.61
RAPGEF1-206ENST00000438647 POTECB2RU33 542 aa31.35■■■□□ 2.61
RAPGEF1-206ENST00000438647 GPC2Q8N158 579 aa31.35■■■□□ 2.61
RAPGEF1-206ENST00000438647 HNRNPUQ00839 825 aaKnown RBP eCLIP31.34■■■□□ 2.61
RAPGEF1-206ENST00000438647 GREM2Q9H772 168 aa31.34■■■□□ 2.61
RAPGEF1-206ENST00000438647 SMC4Q9NTJ3 1288 aa31.34■■■□□ 2.61
RAPGEF1-206ENST00000438647 COL4A5P29400 1685 aa31.34■■■□□ 2.61
RAPGEF1-206ENST00000438647 COL4A1P02462 1669 aa31.33■■■□□ 2.61
RAPGEF1-206ENST00000438647 GRM8O00222 908 aa31.33■■■□□ 2.61
RAPGEF1-206ENST00000438647 FSTL1Q12841 308 aa31.33■■■□□ 2.61
RAPGEF1-206ENST00000438647 BCL2L13Q9BXK5 485 aa31.33■■■□□ 2.61
RAPGEF1-206ENST00000438647 C9orf78Q9NZ63 289 aaPredicted RBP31.33■■■□□ 2.61
RAPGEF1-206ENST00000438647 GPSM2P81274 684 aa31.32■■■□□ 2.6
RAPGEF1-206ENST00000438647 EYA3Q99504 573 aa31.32■■■□□ 2.6
RAPGEF1-206ENST00000438647 PODXL2Q9NZ53 605 aa31.32■■■□□ 2.6
RAPGEF1-206ENST00000438647 ZNRF3Q9ULT6 936 aa31.32■■■□□ 2.6
RAPGEF1-206ENST00000438647 DUOX1Q9NRD9 1551 aa31.31■■■□□ 2.6
RAPGEF1-206ENST00000438647 C6orf229H3BNL8 230 aa31.31■■■□□ 2.6
RAPGEF1-206ENST00000438647 HSPA6P17066 643 aa31.31■■■□□ 2.6
RAPGEF1-206ENST00000438647 WASHC4Q2M389 1173 aa31.31■■■□□ 2.6
RAPGEF1-206ENST00000438647 SMC1BQ8NDV3 1235 aa31.31■■■□□ 2.6
RAPGEF1-206ENST00000438647 ANKIB1Q9P2G1 1089 aa31.31■■■□□ 2.6
RAPGEF1-206ENST00000438647 CSF1RP07333 972 aa31.3■■■□□ 2.6
RAPGEF1-206ENST00000438647 BSDC1Q9NW68 430 aaPredicted RBP31.29■■■□□ 2.6
RAPGEF1-206ENST00000438647 GJA3Q9Y6H8 435 aa31.29■■■□□ 2.6
RAPGEF1-206ENST00000438647 SCN4AP35499 1836 aa31.28■■■□□ 2.6
RAPGEF1-206ENST00000438647 ITGA6P23229 1130 aa31.28■■■□□ 2.6
RAPGEF1-206ENST00000438647 IGHMBP2P38935 993 aaKnown RBP31.28■■■□□ 2.6
RAPGEF1-206ENST00000438647 TBC1D16Q8TBP0 767 aa31.28■■■□□ 2.6
RAPGEF1-206ENST00000438647 POLLQ9UGP5 575 aa31.28■■■□□ 2.6
RAPGEF1-206ENST00000438647 HACL1Q9UJ83 578 aa31.28■■■□□ 2.6
RAPGEF1-206ENST00000438647 FAM161AQ3B820 660 aa31.27■■■□□ 2.6
RAPGEF1-206ENST00000438647 GGA1Q9UJY5 639 aa31.27■■■□□ 2.6
RAPGEF1-206ENST00000438647 XDHP47989 1333 aa31.26■■■□□ 2.6
RAPGEF1-206ENST00000438647 LTBP1Q14766 1721 aa31.26■■■□□ 2.59
RAPGEF1-206ENST00000438647 UFL1O94874 794 aa31.25■■■□□ 2.59
RAPGEF1-206ENST00000438647 TAF1DQ9H5J8 278 aaPredicted RBP31.25■■■□□ 2.59
RAPGEF1-206ENST00000438647 ANKRD18BA2A2Z9 1011 aa31.24■■■□□ 2.59
RAPGEF1-206ENST00000438647 LMOD1P29536 600 aaPredicted RBP31.24■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms