RNA–Protein interactions for RNA: ENST00000430038.5

CPSF4-203, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 735 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-203ENST00000430038 MAP1SQ66K74 1059 aaPredicted RBP22.17■■□□□ 1.14
CPSF4-203ENST00000430038 DDX46Q7L014 1031 aaKnown RBP22.17■■□□□ 1.14
CPSF4-203ENST00000430038 JARID2Q92833 1246 aaPredicted RBP22.17■■□□□ 1.14
CPSF4-203ENST00000430038 FMR1Q06787 632 aaKnown RBP eCLIP22.16■■□□□ 1.14
CPSF4-203ENST00000430038 SF3B3Q15393 1217 aaKnown RBP22.16■■□□□ 1.14
CPSF4-203ENST00000430038 MPNDQ8N594 471 aa22.16■■□□□ 1.14
CPSF4-203ENST00000430038 CXCL9Q07325 125 aa22.15■■□□□ 1.14
CPSF4-203ENST00000430038 RIC3Q7Z5B4 369 aa22.15■■□□□ 1.14
CPSF4-203ENST00000430038 WWC1Q8IX03 1113 aa22.15■■□□□ 1.14
CPSF4-203ENST00000430038 CREBZFQ9NS37 354 aa22.15■■□□□ 1.14
CPSF4-203ENST00000430038 MKRN1Q9UHC7 482 aaKnown RBP22.15■■□□□ 1.14
CPSF4-203ENST00000430038 CLEC11AQ9Y240 323 aa22.15■■□□□ 1.14
CPSF4-203ENST00000430038 DPP8Q6V1X1 898 aaPredicted RBP22.14■■□□□ 1.13
CPSF4-203ENST00000430038 NIM1KQ8IY84 436 aa22.14■■□□□ 1.13
CPSF4-203ENST00000430038 MYD88Q99836 296 aa22.14■■□□□ 1.13
CPSF4-203ENST00000430038 IRS4O14654 1257 aaPredicted RBP22.13■■□□□ 1.13
CPSF4-203ENST00000430038 CALD1Q05682 793 aaKnown RBP22.13■■□□□ 1.13
CPSF4-203ENST00000430038 COL13A1Q5TAT6 717 aaPredicted RBP22.13■■□□□ 1.13
CPSF4-203ENST00000430038 CNTROBQ8N137 903 aa22.13■■□□□ 1.13
CPSF4-203ENST00000430038 YDJCA8MPS7 323 aa22.12■■□□□ 1.13
CPSF4-203ENST00000430038 KIAA2012Q0VF49 1180 aa22.12■■□□□ 1.13
CPSF4-203ENST00000430038 PNMA8AQ86V59 439 aaPredicted RBP22.12■■□□□ 1.13
CPSF4-203ENST00000430038 VPS33BQ9H267 617 aa22.12■■□□□ 1.13
CPSF4-203ENST00000430038 SEC31BQ9NQW1 1179 aa22.12■■□□□ 1.13
CPSF4-203ENST00000430038 ZNRF3Q9ULT6 936 aa22.12■■□□□ 1.13
CPSF4-203ENST00000430038 ZNF316A6NFI3 1004 aaPredicted RBP22.11■■□□□ 1.13
CPSF4-203ENST00000430038 CCDC27Q2M243 656 aa22.11■■□□□ 1.13
CPSF4-203ENST00000430038 G2E3Q7L622 706 aa22.11■■□□□ 1.13
CPSF4-203ENST00000430038 SHTN1A0MZ66 631 aa22.1■■□□□ 1.13
CPSF4-203ENST00000430038 GPSM2P81274 684 aa22.1■■□□□ 1.13
CPSF4-203ENST00000430038 GOLGA2Q08379 1002 aa22.1■■□□□ 1.13
CPSF4-203ENST00000430038 ZBTB38Q8NAP3 1195 aaPredicted RBP22.1■■□□□ 1.13
CPSF4-203ENST00000430038 GPR101Q96P66 508 aaPredicted RBP22.1■■□□□ 1.13
CPSF4-203ENST00000430038 METTL22Q9BUU2 404 aaPredicted RBP22.1■■□□□ 1.13
CPSF4-203ENST00000430038 POLLQ9UGP5 575 aa22.1■■□□□ 1.13
CPSF4-203ENST00000430038 RAD17O75943 681 aa22.09■■□□□ 1.13
CPSF4-203ENST00000430038 CCDC30Q5VVM6 783 aa22.09■■□□□ 1.13
CPSF4-203ENST00000430038 SUPT20HQ8NEM7 779 aa22.09■■□□□ 1.13
CPSF4-203ENST00000430038 TMX4Q9H1E5 349 aaPredicted RBP22.09■■□□□ 1.13
CPSF4-203ENST00000430038 GPRC5DQ9NZD1 345 aa22.09■■□□□ 1.13
CPSF4-203ENST00000430038 IGKV5-2P06315 115 aa22.08■■□□□ 1.13
CPSF4-203ENST00000430038 HSPA1AP0DMV8 641 aaKnown RBP22.08■■□□□ 1.13
CPSF4-203ENST00000430038 HSPA1BP0DMV9 641 aaKnown RBP22.08■■□□□ 1.13
CPSF4-203ENST00000430038 GMPSP49915 693 aaPredicted RBP22.08■■□□□ 1.13
CPSF4-203ENST00000430038 MRS2Q9HD23 443 aa22.08■■□□□ 1.13
CPSF4-203ENST00000430038 KCNQ5Q9NR82 932 aa22.08■■□□□ 1.13
CPSF4-203ENST00000430038 MAP3K2Q9Y2U5 619 aa22.08■■□□□ 1.13
CPSF4-203ENST00000430038 CNTNAP1P78357 1384 aa22.08■■□□□ 1.12
CPSF4-203ENST00000430038 SCN9AQ15858 1988 aa22.07■■□□□ 1.12
CPSF4-203ENST00000430038 TMEM88BA6NKF7 163 aa22.07■■□□□ 1.12
CPSF4-203ENST00000430038 ZEB1P37275 1124 aaPredicted RBP22.07■■□□□ 1.12
CPSF4-203ENST00000430038 CCDC191Q8NCU4 936 aa22.07■■□□□ 1.12
CPSF4-203ENST00000430038 NSFL1CQ9UNZ2 370 aaKnown RBP22.07■■□□□ 1.12
CPSF4-203ENST00000430038 SALL2Q9Y467 1007 aaPredicted RBP22.07■■□□□ 1.12
CPSF4-203ENST00000430038 PI4KAP2A4QPH2 592 aa22.06■■□□□ 1.12
CPSF4-203ENST00000430038 TRAF5O00463 557 aa22.06■■□□□ 1.12
CPSF4-203ENST00000430038 PCCAP05165 728 aaPredicted RBP22.06■■□□□ 1.12
CPSF4-203ENST00000430038 LMOD1P29536 600 aaPredicted RBP22.06■■□□□ 1.12
CPSF4-203ENST00000430038 HIRAP54198 1017 aaPredicted RBP22.06■■□□□ 1.12
CPSF4-203ENST00000430038 RPS8P62241 208 aaKnown RBP22.06■■□□□ 1.12
CPSF4-203ENST00000430038 PI4KAP1Q8N8J0 262 aa22.06■■□□□ 1.12
CPSF4-203ENST00000430038 CCDC85AQ96PX6 553 aaPredicted RBP22.06■■□□□ 1.12
CPSF4-203ENST00000430038 POLR2AP24928 1970 aaKnown RBP22.05■■□□□ 1.12
CPSF4-203ENST00000430038 TRPM7Q96QT4 1865 aa22.05■■□□□ 1.12
CPSF4-203ENST00000430038 RIMBP2O15034 1052 aa22.05■■□□□ 1.12
CPSF4-203ENST00000430038 VEGFBP49765 207 aa22.05■■□□□ 1.12
CPSF4-203ENST00000430038 TWISTNBQ3B726 338 aaPredicted RBP22.05■■□□□ 1.12
CPSF4-203ENST00000430038 CIAPIN1Q6FI81 312 aa22.05■■□□□ 1.12
CPSF4-203ENST00000430038 USP50Q70EL3 339 aaPredicted RBP22.05■■□□□ 1.12
CPSF4-203ENST00000430038 TMC4Q7Z404 712 aa22.05■■□□□ 1.12
CPSF4-203ENST00000430038 SPINK5Q9NQ38 1064 aaPredicted RBP22.05■■□□□ 1.12
CPSF4-203ENST00000430038 WTIPA6NIX2 430 aaPredicted RBP22.04■■□□□ 1.12
CPSF4-203ENST00000430038 KSR2Q6VAB6 950 aa22.04■■□□□ 1.12
CPSF4-203ENST00000430038 DBNDD1Q9H9R9 158 aa22.04■■□□□ 1.12
CPSF4-203ENST00000430038 CWC25Q9NXE8 425 aaPredicted RBP22.04■■□□□ 1.12
CPSF4-203ENST00000430038 ZBTB12Q9Y330 459 aaPredicted RBP22.04■■□□□ 1.12
CPSF4-203ENST00000430038 WASHC4Q2M389 1173 aa22.03■■□□□ 1.12
CPSF4-203ENST00000430038 CWF19L2Q2TBE0 894 aaKnown RBP22.03■■□□□ 1.12
CPSF4-203ENST00000430038 CST9Q5W186 159 aa22.03■■□□□ 1.12
CPSF4-203ENST00000430038 TBC1D16Q8TBP0 767 aa22.03■■□□□ 1.12
CPSF4-203ENST00000430038 IL16Q14005 1332 aa22.03■■□□□ 1.12
CPSF4-203ENST00000430038 MYH3P11055 1940 aa22.02■■□□□ 1.12
CPSF4-203ENST00000430038 SPEF2Q9C093 1822 aa22.02■■□□□ 1.12
CPSF4-203ENST00000430038 PDE8AO60658 829 aa22.02■■□□□ 1.12
CPSF4-203ENST00000430038 SLC4A2P04920 1241 aa22.02■■□□□ 1.12
CPSF4-203ENST00000430038 DOK7Q18PE1 504 aa22.02■■□□□ 1.12
CPSF4-203ENST00000430038 TRPM4Q8TD43 1214 aa22.02■■□□□ 1.12
CPSF4-203ENST00000430038 ADARB2Q9NS39 739 aaKnown RBP22.02■■□□□ 1.12
CPSF4-203ENST00000430038 C6orf229H3BNL8 230 aa22.01■■□□□ 1.11
CPSF4-203ENST00000430038 PSMD14O00487 310 aa22.01■■□□□ 1.11
CPSF4-203ENST00000430038 ANP32CO43423 234 aa22.01■■□□□ 1.11
CPSF4-203ENST00000430038 CACNA1FO60840 1977 aa22.01■■□□□ 1.11
CPSF4-203ENST00000430038 FANCIQ9NVI1 1328 aa22.01■■□□□ 1.11
CPSF4-203ENST00000430038 RTL9Q8NET4 1388 aa22■■□□□ 1.11
CPSF4-203ENST00000430038 VAMP4O75379 141 aa22■■□□□ 1.11
CPSF4-203ENST00000430038 DDX58O95786 925 aaKnown RBP22■■□□□ 1.11
CPSF4-203ENST00000430038 EGFRP00533 1210 aa22■■□□□ 1.11
CPSF4-203ENST00000430038 NCBP3Q53F19 620 aaKnown RBP22■■□□□ 1.11
CPSF4-203ENST00000430038 DLK2Q6UY11 383 aa22■■□□□ 1.11
CPSF4-203ENST00000430038 PGAP2Q9UHJ9 254 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms