RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 VEGFBP49765 207 aa18.85■□□□□ 0.61
SDC1-204ENST00000429035 MBIPQ9NS73 344 aa18.85■□□□□ 0.61
SDC1-204ENST00000429035 BBOX1O75936 387 aa18.84■□□□□ 0.61
SDC1-204ENST00000429035 ANKRD13DQ6ZTN6 518 aa18.84■□□□□ 0.61
SDC1-204ENST00000429035 CFAP44Q96MT7 982 aa18.84■□□□□ 0.61
SDC1-204ENST00000429035 PRKRIP1Q9H875 184 aaPredicted RBP18.84■□□□□ 0.61
SDC1-204ENST00000429035 DUOX1Q9NRD9 1551 aa18.84■□□□□ 0.61
SDC1-204ENST00000429035 FOXN1O15353 648 aa18.83■□□□□ 0.6
SDC1-204ENST00000429035 FMR1Q06787 632 aaKnown RBP eCLIP18.83■□□□□ 0.6
SDC1-204ENST00000429035 GRM1Q13255 1194 aa18.83■□□□□ 0.6
SDC1-204ENST00000429035 SP8Q8IXZ3 490 aa18.83■□□□□ 0.6
SDC1-204ENST00000429035 FAM89AQ96GI7 184 aa18.83■□□□□ 0.6
SDC1-204ENST00000429035 BCL2L13Q9BXK5 485 aa18.83■□□□□ 0.6
SDC1-204ENST00000429035 ZNRF3Q9ULT6 936 aa18.83■□□□□ 0.6
SDC1-204ENST00000429035 APAF1O14727 1248 aa18.82■□□□□ 0.6
SDC1-204ENST00000429035 RAD17O75943 681 aa18.82■□□□□ 0.6
SDC1-204ENST00000429035 GMPSP49915 693 aaPredicted RBP18.82■□□□□ 0.6
SDC1-204ENST00000429035 CXCL9Q07325 125 aa18.82■□□□□ 0.6
SDC1-204ENST00000429035 GOLGA2Q08379 1002 aa18.82■□□□□ 0.6
SDC1-204ENST00000429035 CIAPIN1Q6FI81 312 aa18.82■□□□□ 0.6
SDC1-204ENST00000429035 USP50Q70EL3 339 aaPredicted RBP18.82■□□□□ 0.6
SDC1-204ENST00000429035 RIC3Q7Z5B4 369 aa18.82■□□□□ 0.6
SDC1-204ENST00000429035 HYPKQ9NX55 129 aa18.82■□□□□ 0.6
SDC1-204ENST00000429035 COL4A1P02462 1669 aa18.82■□□□□ 0.6
SDC1-204ENST00000429035 ELL2O00472 640 aaPredicted RBP18.81■□□□□ 0.6
SDC1-204ENST00000429035 KIAA2012Q0VF49 1180 aa18.81■□□□□ 0.6
SDC1-204ENST00000429035 DEFB115Q30KQ5 88 aa18.81■□□□□ 0.6
SDC1-204ENST00000429035 ISCA1Q9BUE6 129 aa18.81■□□□□ 0.6
SDC1-204ENST00000429035 RTFDC1Q9BY42 306 aaPredicted RBP18.81■□□□□ 0.6
SDC1-204ENST00000429035 VPS33BQ9H267 617 aa18.81■□□□□ 0.6
SDC1-204ENST00000429035 ADARB2Q9NS39 739 aaKnown RBP18.81■□□□□ 0.6
SDC1-204ENST00000429035 GPRC5DQ9NZD1 345 aa18.81■□□□□ 0.6
SDC1-204ENST00000429035 TRAF5O00463 557 aa18.8■□□□□ 0.6
SDC1-204ENST00000429035 RASSF10A6NK89 507 aa18.79■□□□□ 0.6
SDC1-204ENST00000429035 CALD1Q05682 793 aaKnown RBP18.79■□□□□ 0.6
SDC1-204ENST00000429035 TMC4Q7Z404 712 aa18.79■□□□□ 0.6
SDC1-204ENST00000429035 CELF1Q92879 486 aaKnown RBP18.79■□□□□ 0.6
SDC1-204ENST00000429035 IFT57Q9NWB7 429 aa18.79■□□□□ 0.6
SDC1-204ENST00000429035 WDR33Q9C0J8 1336 aaKnown RBP18.78■□□□□ 0.6
SDC1-204ENST00000429035 IRS4O14654 1257 aaPredicted RBP18.78■□□□□ 0.6
SDC1-204ENST00000429035 GNAI1P63096 354 aa18.78■□□□□ 0.6
SDC1-204ENST00000429035 TNIP1Q15025 636 aa18.78■□□□□ 0.6
SDC1-204ENST00000429035 MYD88Q99836 296 aa18.78■□□□□ 0.6
SDC1-204ENST00000429035 PHAXQ9H814 394 aaKnown RBP18.78■□□□□ 0.6
SDC1-204ENST00000429035 NSFL1CQ9UNZ2 370 aaKnown RBP18.78■□□□□ 0.6
SDC1-204ENST00000429035 SPEF2Q9C093 1822 aa18.78■□□□□ 0.6
SDC1-204ENST00000429035 C6orf229H3BNL8 230 aa18.77■□□□□ 0.6
SDC1-204ENST00000429035 RIMBP2O15034 1052 aa18.77■□□□□ 0.6
SDC1-204ENST00000429035 CTCFP49711 727 aaPredicted RBP18.77■□□□□ 0.6
SDC1-204ENST00000429035 ZNF408Q9H9D4 720 aa18.77■□□□□ 0.6
SDC1-204ENST00000429035 DBNDD1Q9H9R9 158 aa18.77■□□□□ 0.6
SDC1-204ENST00000429035 THSD7BQ9C0I4 1608 aa18.77■□□□□ 0.6
SDC1-204ENST00000429035 YDJCA8MPS7 323 aa18.76■□□□□ 0.59
SDC1-204ENST00000429035 CDHR2Q9BYE9 1310 aa18.75■□□□□ 0.59
SDC1-204ENST00000429035 SHTN1A0MZ66 631 aa18.75■□□□□ 0.59
SDC1-204ENST00000429035 ZNF853P0CG23 659 aa18.75■□□□□ 0.59
SDC1-204ENST00000429035 GPSM2P81274 684 aa18.75■□□□□ 0.59
SDC1-204ENST00000429035 SF3B3Q15393 1217 aaKnown RBP18.75■□□□□ 0.59
SDC1-204ENST00000429035 WASHC4Q2M389 1173 aa18.75■□□□□ 0.59
SDC1-204ENST00000429035 CYP4F22Q6NT55 531 aa18.75■□□□□ 0.59
SDC1-204ENST00000429035 TRPM4Q8TD43 1214 aa18.75■□□□□ 0.59
SDC1-204ENST00000429035 GPR101Q96P66 508 aaPredicted RBP18.75■□□□□ 0.59
SDC1-204ENST00000429035 GLIS2Q9BZE0 524 aaPredicted RBP18.75■□□□□ 0.59
SDC1-204ENST00000429035 MYH3P11055 1940 aa18.74■□□□□ 0.59
SDC1-204ENST00000429035 CELF2O95319 508 aaKnown RBP18.74■□□□□ 0.59
SDC1-204ENST00000429035 LBX1P52954 281 aa18.74■□□□□ 0.59
SDC1-204ENST00000429035 MICALL2Q8IY33 904 aa18.74■□□□□ 0.59
SDC1-204ENST00000429035 CAPNS2Q96L46 248 aa18.74■□□□□ 0.59
SDC1-204ENST00000429035 CCDC85AQ96PX6 553 aaPredicted RBP18.74■□□□□ 0.59
SDC1-204ENST00000429035 ZBTB12Q9Y330 459 aaPredicted RBP18.74■□□□□ 0.59
SDC1-204ENST00000429035 H7C1D1 291 aa18.73■□□□□ 0.59
SDC1-204ENST00000429035 ECE1P42892 770 aa18.73■□□□□ 0.59
SDC1-204ENST00000429035 ZBTB38Q8NAP3 1195 aaPredicted RBP18.73■□□□□ 0.59
SDC1-204ENST00000429035 C8orf58Q8NAV2 365 aa18.73■□□□□ 0.59
SDC1-204ENST00000429035 JARID2Q92833 1246 aaPredicted RBP18.73■□□□□ 0.59
SDC1-204ENST00000429035 EYA3Q99504 573 aa18.73■□□□□ 0.59
SDC1-204ENST00000429035 WBP1LQ9NX94 342 aa18.73■□□□□ 0.59
SDC1-204ENST00000429035 CNOT7Q9UIV1 285 aaKnown RBP18.73■□□□□ 0.59
SDC1-204ENST00000429035 SCN9AQ15858 1988 aa18.72■□□□□ 0.59
SDC1-204ENST00000429035 PSMD14O00487 310 aa18.72■□□□□ 0.59
SDC1-204ENST00000429035 ECE2O60344 883 aa18.72■□□□□ 0.59
SDC1-204ENST00000429035 DDX58O95786 925 aaKnown RBP18.72■□□□□ 0.59
SDC1-204ENST00000429035 MAP2K1Q02750 393 aaPredicted RBP18.72■□□□□ 0.59
SDC1-204ENST00000429035 DOK7Q18PE1 504 aa18.72■□□□□ 0.59
SDC1-204ENST00000429035 PRDM10Q9NQV6 1147 aa18.72■□□□□ 0.59
SDC1-204ENST00000429035 SEC31BQ9NQW1 1179 aa18.72■□□□□ 0.59
SDC1-204ENST00000429035 POLLQ9UGP5 575 aa18.72■□□□□ 0.59
SDC1-204ENST00000429035 POLR2AP24928 1970 aaKnown RBP18.72■□□□□ 0.59
SDC1-204ENST00000429035 G3V3G9 751 aa18.71■□□□□ 0.59
SDC1-204ENST00000429035 TRIM28Q13263 835 aaKnown RBP18.71■□□□□ 0.59
SDC1-204ENST00000429035 DCAF8Q5TAQ9 597 aa18.71■□□□□ 0.59
SDC1-204ENST00000429035 CCDC30Q5VVM6 783 aa18.71■□□□□ 0.59
SDC1-204ENST00000429035 CST9Q5W186 159 aa18.71■□□□□ 0.59
SDC1-204ENST00000429035 TSR2Q969E8 191 aaKnown RBP18.71■□□□□ 0.59
SDC1-204ENST00000429035 BEGAINQ9BUH8 593 aa18.71■□□□□ 0.59
SDC1-204ENST00000429035 CWC25Q9NXE8 425 aaPredicted RBP18.71■□□□□ 0.59
SDC1-204ENST00000429035 TLL2Q9Y6L7 1015 aa18.71■□□□□ 0.59
SDC1-204ENST00000429035 UFL1O94874 794 aa18.7■□□□□ 0.58
SDC1-204ENST00000429035 HSPA8P11142 646 aaKnown RBP18.7■□□□□ 0.58
SDC1-204ENST00000429035 HSP90B1P14625 803 aaKnown RBP18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms