RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 PPP1R1BQ9UD71 204 aaPredicted RBP16.75■□□□□ 0.27
PRPF39-202ENST00000424478 SURF6O75683 361 aaKnown RBP16.75■□□□□ 0.27
PRPF39-202ENST00000424478 ERICH6BQ5W0A0 696 aa16.75■□□□□ 0.27
PRPF39-202ENST00000424478 RPAP2Q8IXW5 612 aaPredicted RBP16.75■□□□□ 0.27
PRPF39-202ENST00000424478 RWDD1Q9H446 243 aaPredicted RBP16.74■□□□□ 0.27
PRPF39-202ENST00000424478 MYH3P11055 1940 aa16.74■□□□□ 0.27
PRPF39-202ENST00000424478 KDM2BQ8NHM5 1336 aa16.74■□□□□ 0.27
PRPF39-202ENST00000424478 CDHR2Q9BYE9 1310 aa16.74■□□□□ 0.27
PRPF39-202ENST00000424478 ITGA6P23229 1130 aa16.74■□□□□ 0.27
PRPF39-202ENST00000424478 RABL6Q3YEC7 729 aaPredicted RBP16.74■□□□□ 0.27
PRPF39-202ENST00000424478 NYXQ9GZU5 481 aa16.74■□□□□ 0.27
PRPF39-202ENST00000424478 QSER1Q2KHR3 1735 aa16.74■□□□□ 0.27
PRPF39-202ENST00000424478 LAMB2P55268 1798 aa16.73■□□□□ 0.27
PRPF39-202ENST00000424478 LRRC24Q50LG9 513 aa16.73■□□□□ 0.27
PRPF39-202ENST00000424478 SSH3Q8TE77 659 aa16.73■□□□□ 0.27
PRPF39-202ENST00000424478 HMGB2P26583 209 aaKnown RBP16.73■□□□□ 0.27
PRPF39-202ENST00000424478 RFX5P48382 616 aaPredicted RBP16.73■□□□□ 0.27
PRPF39-202ENST00000424478 IL1RAPL2Q9NP60 686 aa16.73■□□□□ 0.27
PRPF39-202ENST00000424478 PTPN12Q05209 780 aaKnown RBP16.72■□□□□ 0.27
PRPF39-202ENST00000424478 HDAC1Q13547 482 aaPredicted RBP16.72■□□□□ 0.27
PRPF39-202ENST00000424478 POLA2Q14181 598 aa16.72■□□□□ 0.27
PRPF39-202ENST00000424478 SPEF2Q9C093 1822 aa16.72■□□□□ 0.27
PRPF39-202ENST00000424478 CSF1RP07333 972 aa16.71■□□□□ 0.27
PRPF39-202ENST00000424478 CHRNA5P30532 468 aa16.71■□□□□ 0.27
PRPF39-202ENST00000424478 CCDC57Q2TAC2 916 aa16.71■□□□□ 0.27
PRPF39-202ENST00000424478 ANKRD45Q5TZF3 282 aa16.71■□□□□ 0.27
PRPF39-202ENST00000424478 NLRP3Q96P20 1036 aa16.71■□□□□ 0.27
PRPF39-202ENST00000424478 LNPKQ9C0E8 428 aa16.71■□□□□ 0.27
PRPF39-202ENST00000424478 ST5P78524 1137 aa16.71■□□□□ 0.27
PRPF39-202ENST00000424478 OS9Q13438 667 aaPredicted RBP16.71■□□□□ 0.27
PRPF39-202ENST00000424478 C16orf71Q8IYS4 520 aaPredicted RBP16.71■□□□□ 0.27
PRPF39-202ENST00000424478 CELF1Q92879 486 aaKnown RBP16.71■□□□□ 0.27
PRPF39-202ENST00000424478 ANKRD31Q8N7Z5 1873 aa16.71■□□□□ 0.27
PRPF39-202ENST00000424478 SNAP23O00161 211 aa16.71■□□□□ 0.26
PRPF39-202ENST00000424478 MTX1Q13505 466 aa16.71■□□□□ 0.26
PRPF39-202ENST00000424478 WTIPA6NIX2 430 aaPredicted RBP16.7■□□□□ 0.26
PRPF39-202ENST00000424478 IFIT5Q13325 482 aaKnown RBP16.7■□□□□ 0.26
PRPF39-202ENST00000424478 TAF7LQ5H9L4 462 aa16.7■□□□□ 0.26
PRPF39-202ENST00000424478 HELBQ8NG08 1087 aaPredicted RBP16.7■□□□□ 0.26
PRPF39-202ENST00000424478 PLA2G12BQ9BX93 195 aa16.7■□□□□ 0.26
PRPF39-202ENST00000424478 HMMRO75330 724 aa16.7■□□□□ 0.26
PRPF39-202ENST00000424478 OTUD7AQ8TE49 926 aaPredicted RBP16.69■□□□□ 0.26
PRPF39-202ENST00000424478 PDZRN3Q9UPQ7 1066 aa16.69■□□□□ 0.26
PRPF39-202ENST00000424478 RGS3P49796 1198 aa16.69■□□□□ 0.26
PRPF39-202ENST00000424478 AAMPQ13685 434 aa16.69■□□□□ 0.26
PRPF39-202ENST00000424478 OLFM4Q6UX06 510 aa16.69■□□□□ 0.26
PRPF39-202ENST00000424478 DCTPP1Q9H773 170 aa16.69■□□□□ 0.26
PRPF39-202ENST00000424478 RGL2O15211 777 aa16.69■□□□□ 0.26
PRPF39-202ENST00000424478 SLC10A5Q5PT55 438 aa16.69■□□□□ 0.26
PRPF39-202ENST00000424478 MTFR1LQ9H019 292 aa16.69■□□□□ 0.26
PRPF39-202ENST00000424478 ZNF219Q9P2Y4 722 aaPredicted RBP16.69■□□□□ 0.26
PRPF39-202ENST00000424478 CCDC152Q4G0S7 254 aa16.68■□□□□ 0.26
PRPF39-202ENST00000424478 TSHZ3Q63HK5 1081 aa16.68■□□□□ 0.26
PRPF39-202ENST00000424478 CENPQQ7L2Z9 268 aaPredicted RBP16.68■□□□□ 0.26
PRPF39-202ENST00000424478 ANKRD18BA2A2Z9 1011 aa16.67■□□□□ 0.26
PRPF39-202ENST00000424478 SASH1O94885 1247 aa16.67■□□□□ 0.26
PRPF39-202ENST00000424478 SMC5Q8IY18 1101 aa16.67■□□□□ 0.26
PRPF39-202ENST00000424478 HDAC5Q9UQL6 1122 aa16.67■□□□□ 0.26
PRPF39-202ENST00000424478 LDHAL6AQ6ZMR3 332 aa16.67■□□□□ 0.26
PRPF39-202ENST00000424478 TAF5LO75529 589 aa16.66■□□□□ 0.26
PRPF39-202ENST00000424478 SLC16A10Q8TF71 515 aa16.66■□□□□ 0.26
PRPF39-202ENST00000424478 IBTKQ9P2D0 1353 aaPredicted RBP16.66■□□□□ 0.26
PRPF39-202ENST00000424478 A0A0G2JLW4 131 aa16.66■□□□□ 0.26
PRPF39-202ENST00000424478 PTGER2P43116 358 aa16.66■□□□□ 0.26
PRPF39-202ENST00000424478 TFCP2Q12800 502 aa16.66■□□□□ 0.26
PRPF39-202ENST00000424478 CACNA1SQ13698 1873 aa16.66■□□□□ 0.26
PRPF39-202ENST00000424478 ATG9AQ7Z3C6 839 aa16.66■□□□□ 0.26
PRPF39-202ENST00000424478 RPGRQ92834 1020 aaKnown RBP16.66■□□□□ 0.26
PRPF39-202ENST00000424478 ZNF622Q969S3 477 aaKnown RBP eCLIP16.66■□□□□ 0.261e-6■□□□□ 11.2
PRPF39-202ENST00000424478 CNNM1Q9NRU3 951 aa16.66■□□□□ 0.26
PRPF39-202ENST00000424478 COL11A2P13942 1736 aaPredicted RBP16.65■□□□□ 0.26
PRPF39-202ENST00000424478 NRXN2Q9P2S2 1712 aa16.65■□□□□ 0.26
PRPF39-202ENST00000424478 SF3B3Q15393 1217 aaKnown RBP16.65■□□□□ 0.26
PRPF39-202ENST00000424478 PDE4AP27815 886 aa16.65■□□□□ 0.26
PRPF39-202ENST00000424478 G3BP1Q13283 466 aaKnown RBP eCLIP16.65■□□□□ 0.26
PRPF39-202ENST00000424478 BRIP1Q9BX63 1249 aa16.65■□□□□ 0.26
PRPF39-202ENST00000424478 COPRSQ9NQ92 184 aa16.65■□□□□ 0.26
PRPF39-202ENST00000424478 DDX46Q7L014 1031 aaKnown RBP16.64■□□□□ 0.25
PRPF39-202ENST00000424478 C2CD5Q86YS7 1000 aa16.64■□□□□ 0.25
PRPF39-202ENST00000424478 RHPN1Q8TCX5 695 aa16.64■□□□□ 0.25
PRPF39-202ENST00000424478 POLD1P28340 1107 aa16.64■□□□□ 0.25
PRPF39-202ENST00000424478 TLR7Q9NYK1 1049 aaKnown RBP16.64■□□□□ 0.25
PRPF39-202ENST00000424478 MPHOSPH8Q99549 860 aa16.63■□□□□ 0.25
PRPF39-202ENST00000424478 SGIP1Q9BQI5 828 aa16.63■□□□□ 0.25
PRPF39-202ENST00000424478 EYA2O00167 538 aa16.63■□□□□ 0.25
PRPF39-202ENST00000424478 CHD1LQ86WJ1 897 aa16.63■□□□□ 0.25
PRPF39-202ENST00000424478 CCDC8Q9H0W5 538 aaPredicted RBP16.63■□□□□ 0.25
PRPF39-202ENST00000424478 SOCS7O14512 581 aa16.63■□□□□ 0.25
PRPF39-202ENST00000424478 SRGNP10124 158 aa16.63■□□□□ 0.25
PRPF39-202ENST00000424478 GCC1Q96CN9 775 aa16.63■□□□□ 0.25
PRPF39-202ENST00000424478 LRRCC1Q9C099 1032 aa16.63■□□□□ 0.25
PRPF39-202ENST00000424478 NUCB1Q02818 461 aa16.62■□□□□ 0.25
PRPF39-202ENST00000424478 CRY2Q49AN0 593 aa16.62■□□□□ 0.25
PRPF39-202ENST00000424478 ANKRD18AQ8IVF6 992 aa16.62■□□□□ 0.25
PRPF39-202ENST00000424478 GPR101Q96P66 508 aaPredicted RBP16.62■□□□□ 0.25
PRPF39-202ENST00000424478 TIMM10P62072 90 aa16.62■□□□□ 0.25
PRPF39-202ENST00000424478 NOP58Q9Y2X3 529 aaKnown RBP16.62■□□□□ 0.25
PRPF39-202ENST00000424478 RPS8P62241 208 aaKnown RBP16.61■□□□□ 0.25
PRPF39-202ENST00000424478 DPEP1P16444 411 aa16.61■□□□□ 0.25
PRPF39-202ENST00000424478 IGHMBP2P38935 993 aaKnown RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms