RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 NBPF5PQ86XG9 351 aaPredicted RBP33.03■■■□□ 2.88
MSX1-201ENST00000382723 CLASRPQ8N2M8 674 aaKnown RBP33.03■■■□□ 2.88
MSX1-201ENST00000382723 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP33.03■■■□□ 2.88
MSX1-201ENST00000382723 GYS1P13807 737 aa33.02■■■□□ 2.88
MSX1-201ENST00000382723 ITGA6P23229 1130 aa33.02■■■□□ 2.88
MSX1-201ENST00000382723 PDE1AP54750 535 aa33.02■■■□□ 2.88
MSX1-201ENST00000382723 TAF7LQ5H9L4 462 aa33.02■■■□□ 2.88
MSX1-201ENST00000382723 HSP90B1P14625 803 aaKnown RBP33.02■■■□□ 2.88
MSX1-201ENST00000382723 MX1P20591 662 aa33.02■■■□□ 2.88
MSX1-201ENST00000382723 TSHZ3Q63HK5 1081 aa33.02■■■□□ 2.88
MSX1-201ENST00000382723 NYXQ9GZU5 481 aa33.02■■■□□ 2.88
MSX1-201ENST00000382723 SALL3Q9BXA9 1300 aa33.01■■■□□ 2.88
MSX1-201ENST00000382723 MSH5O43196 834 aa33■■■□□ 2.87
MSX1-201ENST00000382723 NFIXQ14938 502 aa33■■■□□ 2.87
MSX1-201ENST00000382723 RGPD3A6NKT7 1758 aaPredicted RBP33■■■□□ 2.87
MSX1-201ENST00000382723 RGPD4Q7Z3J3 1758 aa33■■■□□ 2.87
MSX1-201ENST00000382723 TFCP2Q12800 502 aa33■■■□□ 2.87
MSX1-201ENST00000382723 LRRC24Q50LG9 513 aa33■■■□□ 2.87
MSX1-201ENST00000382723 BMP2KLQ5H9B9 411 aa33■■■□□ 2.87
MSX1-201ENST00000382723 ANKRD18BA2A2Z9 1011 aa32.99■■■□□ 2.87
MSX1-201ENST00000382723 TTC22Q5TAA0 569 aa32.99■■■□□ 2.87
MSX1-201ENST00000382723 EYA2O00167 538 aa32.98■■■□□ 2.87
MSX1-201ENST00000382723 ATG9AQ7Z3C6 839 aa32.98■■■□□ 2.87
MSX1-201ENST00000382723 AACSQ86V21 672 aa32.98■■■□□ 2.87
MSX1-201ENST00000382723 PUS3Q9BZE2 481 aaKnown RBP32.98■■■□□ 2.87
MSX1-201ENST00000382723 GSPT1P15170 499 aaKnown RBP32.98■■■□□ 2.87
MSX1-201ENST00000382723 TPTE2Q6XPS3 522 aa32.98■■■□□ 2.87
MSX1-201ENST00000382723 COL23A1Q86Y22 540 aaPredicted RBP32.97■■■□□ 2.87
MSX1-201ENST00000382723 OSBPL3Q9H4L5 887 aa32.97■■■□□ 2.87
MSX1-201ENST00000382723 NPHP1O15259 732 aa32.96■■■□□ 2.87
MSX1-201ENST00000382723 IFIT2P09913 472 aaKnown RBP32.96■■■□□ 2.87
MSX1-201ENST00000382723 BAG6P46379 1132 aa32.96■■■□□ 2.87
MSX1-201ENST00000382723 CCDC24Q8N4L8 307 aa32.96■■■□□ 2.87
MSX1-201ENST00000382723 CARMIL3Q8ND23 1372 aa32.96■■■□□ 2.87
MSX1-201ENST00000382723 IL15P40933 162 aaPredicted RBP32.96■■■□□ 2.87
MSX1-201ENST00000382723 CCDC152Q4G0S7 254 aa32.96■■■□□ 2.87
MSX1-201ENST00000382723 DEFB132Q7Z7B7 95 aa32.96■■■□□ 2.87
MSX1-201ENST00000382723 DDX60Q8IY21 1712 aaKnown RBP32.96■■■□□ 2.87
MSX1-201ENST00000382723 ABCC12Q96J65 1359 aa32.96■■■□□ 2.87
MSX1-201ENST00000382723 EAF2Q96CJ1 260 aaPredicted RBP32.95■■■□□ 2.87
MSX1-201ENST00000382723 STAP2Q9UGK3 403 aa32.95■■■□□ 2.87
MSX1-201ENST00000382723 COL24A1Q17RW2 1714 aa32.95■■■□□ 2.86
MSX1-201ENST00000382723 CIAO1O76071 339 aa32.94■■■□□ 2.86
MSX1-201ENST00000382723 MYH3P11055 1940 aa32.94■■■□□ 2.86
MSX1-201ENST00000382723 C3orf67Q6ZVT6 689 aa32.94■■■□□ 2.86
MSX1-201ENST00000382723 CCDC8Q9H0W5 538 aaPredicted RBP32.94■■■□□ 2.86
MSX1-201ENST00000382723 FLAD1Q8NFF5 587 aa32.93■■■□□ 2.86
MSX1-201ENST00000382723 SLC10A5Q5PT55 438 aa32.92■■■□□ 2.86
MSX1-201ENST00000382723 ANO8Q9HCE9 1232 aaPredicted RBP32.92■■■□□ 2.86
MSX1-201ENST00000382723 SEC31BQ9NQW1 1179 aa32.92■■■□□ 2.86
MSX1-201ENST00000382723 LDHAL6AQ6ZMR3 332 aa32.92■■■□□ 2.86
MSX1-201ENST00000382723 PNPLA7Q6ZV29 1317 aa32.91■■■□□ 2.86
MSX1-201ENST00000382723 TNNI3KQ59H18 835 aa32.91■■■□□ 2.86
MSX1-201ENST00000382723 FPGT-TNNI3KV9GXZ4 949 aa32.91■■■□□ 2.86
MSX1-201ENST00000382723 TLR7Q9NYK1 1049 aaKnown RBP32.9■■■□□ 2.86
MSX1-201ENST00000382723 FBXO3Q9UK99 471 aa32.9■■■□□ 2.86
MSX1-201ENST00000382723 LAMB2P55268 1798 aa32.9■■■□□ 2.86
MSX1-201ENST00000382723 TM4SF1P30408 202 aa32.9■■■□□ 2.86
MSX1-201ENST00000382723 CNNM1Q9NRU3 951 aa32.9■■■□□ 2.86
MSX1-201ENST00000382723 RBM19Q9Y4C8 960 aaKnown RBP32.9■■■□□ 2.86
MSX1-201ENST00000382723 CNBD1Q8NA66 436 aa32.89■■■□□ 2.86
MSX1-201ENST00000382723 SLC15A2Q16348 729 aa32.89■■■□□ 2.85
MSX1-201ENST00000382723 STK32BQ9NY57 414 aa32.89■■■□□ 2.85
MSX1-201ENST00000382723 TUBGCP6Q96RT7 1819 aa32.88■■■□□ 2.85
MSX1-201ENST00000382723 AOX1Q06278 1338 aa32.88■■■□□ 2.85
MSX1-201ENST00000382723 NLRP3Q96P20 1036 aa32.88■■■□□ 2.85
MSX1-201ENST00000382723 CEP126Q9P2H0 1117 aa32.88■■■□□ 2.85
MSX1-201ENST00000382723 SDSP20132 328 aa32.87■■■□□ 2.85
MSX1-201ENST00000382723 SF3B3Q15393 1217 aaKnown RBP32.87■■■□□ 2.85
MSX1-201ENST00000382723 GPATCH3Q96I76 525 aa32.87■■■□□ 2.85
MSX1-201ENST00000382723 SERPINB2P05120 415 aa32.87■■■□□ 2.85
MSX1-201ENST00000382723 PI4K2BQ8TCG2 481 aa32.87■■■□□ 2.85
MSX1-201ENST00000382723 RTL9Q8NET4 1388 aa32.86■■■□□ 2.85
MSX1-201ENST00000382723 ECHDC1Q9NTX5 307 aa32.86■■■□□ 2.85
MSX1-201ENST00000382723 RIPOR2Q9Y4F9 1068 aa32.86■■■□□ 2.85
MSX1-201ENST00000382723 TTC41PQ6P2S7 1318 aa32.86■■■□□ 2.85
MSX1-201ENST00000382723 DDR1Q08345 913 aa32.85■■■□□ 2.85
MSX1-201ENST00000382723 METTL24Q5JXM2 366 aa32.85■■■□□ 2.85
MSX1-201ENST00000382723 PRR5LQ6MZQ0 368 aa32.85■■■□□ 2.85
MSX1-201ENST00000382723 NLGN1Q8N2Q7 840 aa32.85■■■□□ 2.85
MSX1-201ENST00000382723 MPHOSPH8Q99549 860 aa32.84■■■□□ 2.85
MSX1-201ENST00000382723 NEUROD6Q96NK8 337 aa32.83■■■□□ 2.85
MSX1-201ENST00000382723 DBNLQ9UJU6 430 aaKnown RBP32.83■■■□□ 2.85
MSX1-201ENST00000382723 POLRMTO00411 1230 aaKnown RBP32.83■■■□□ 2.85
MSX1-201ENST00000382723 SEC24BO95487 1268 aa32.83■■■□□ 2.85
MSX1-201ENST00000382723 GPR108Q9NPR9 543 aa32.83■■■□□ 2.85
MSX1-201ENST00000382723 TRIM6-TRIM34B2RNG4 842 aa32.82■■■□□ 2.84
MSX1-201ENST00000382723 ERC2O15083 957 aa32.82■■■□□ 2.84
MSX1-201ENST00000382723 IGHMBP2P38935 993 aaKnown RBP32.82■■■□□ 2.84
MSX1-201ENST00000382723 TIMM10P62072 90 aa32.82■■■□□ 2.84
MSX1-201ENST00000382723 MAP4K4O95819 1239 aaPredicted RBP32.81■■■□□ 2.84
MSX1-201ENST00000382723 CDC5LQ99459 802 aaKnown RBP32.81■■■□□ 2.84
MSX1-201ENST00000382723 DBNDD2Q9BQY9 259 aa32.81■■■□□ 2.84
MSX1-201ENST00000382723 RIC1Q4ADV7 1423 aa32.81■■■□□ 2.84
MSX1-201ENST00000382723 GLRX3O76003 335 aaKnown RBP32.81■■■□□ 2.84
MSX1-201ENST00000382723 MSL1Q68DK7 614 aa32.81■■■□□ 2.84
MSX1-201ENST00000382723 RILPL2Q969X0 211 aa32.81■■■□□ 2.84
MSX1-201ENST00000382723 CDC45O75419 566 aa32.8■■■□□ 2.84
MSX1-201ENST00000382723 ST5P78524 1137 aa32.8■■■□□ 2.84
MSX1-201ENST00000382723 A0A1B0GUL7 405 aa32.79■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms