RNA–Protein interactions for RNA: ENST00000376709.8

VSX1-202, Transcript of visual system homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VSX1, Length 2,192 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-202ENST00000376709 KIF6Q6ZMV9 814 aa24.28■■□□□ 1.48
VSX1-202ENST00000376709 LARP6Q9BRS8 491 aaKnown RBP24.28■■□□□ 1.48
VSX1-202ENST00000376709 GRPEL1Q9HAV7 217 aa24.28■■□□□ 1.48
VSX1-202ENST00000376709 MED23Q9ULK4 1368 aa24.28■■□□□ 1.48
VSX1-202ENST00000376709 TOM1O60784 492 aa24.27■■□□□ 1.48
VSX1-202ENST00000376709 NCLP19338 710 aaKnown RBP24.27■■□□□ 1.48
VSX1-202ENST00000376709 SLC4A9Q96Q91 983 aa24.27■■□□□ 1.48
VSX1-202ENST00000376709 ZSWIM6Q9HCJ5 1215 aa24.27■■□□□ 1.48
VSX1-202ENST00000376709 PDRG1Q9NUG6 133 aa24.27■■□□□ 1.48
VSX1-202ENST00000376709 TCIRG1Q13488 830 aa24.27■■□□□ 1.48
VSX1-202ENST00000376709 VPS53Q5VIR6 699 aa24.27■■□□□ 1.48
VSX1-202ENST00000376709 ATG9AQ7Z3C6 839 aa24.27■■□□□ 1.48
VSX1-202ENST00000376709 NDUFB9Q9Y6M9 179 aa24.27■■□□□ 1.48
VSX1-202ENST00000376709 IL15P40933 162 aaPredicted RBP24.26■■□□□ 1.47
VSX1-202ENST00000376709 PRIM1P49642 420 aaKnown RBP24.26■■□□□ 1.47
VSX1-202ENST00000376709 RNF20Q5VTR2 975 aa24.26■■□□□ 1.47
VSX1-202ENST00000376709 NEUROD6Q96NK8 337 aa24.26■■□□□ 1.47
VSX1-202ENST00000376709 ISCA1Q9BUE6 129 aa24.26■■□□□ 1.47
VSX1-202ENST00000376709 CCDC9Q9Y3X0 531 aaKnown RBP24.26■■□□□ 1.47
VSX1-202ENST00000376709 ZSCAN21Q9Y5A6 473 aaPredicted RBP24.26■■□□□ 1.47
VSX1-202ENST00000376709 ZNF589Q86UQ0 364 aaPredicted RBP24.25■■□□□ 1.47
VSX1-202ENST00000376709 CHAMP1Q96JM3 812 aa24.25■■□□□ 1.47
VSX1-202ENST00000376709 HAUS7Q99871 368 aa24.25■■□□□ 1.47
VSX1-202ENST00000376709 DOT1LQ8TEK3 1739 aa24.25■■□□□ 1.47
VSX1-202ENST00000376709 SLC27A2O14975 620 aa24.25■■□□□ 1.47
VSX1-202ENST00000376709 CDCA7Q9BWT1 371 aaPredicted RBP24.25■■□□□ 1.47
VSX1-202ENST00000376709 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.24■■□□□ 1.47
VSX1-202ENST00000376709 DDB1Q16531 1140 aa24.24■■□□□ 1.47
VSX1-202ENST00000376709 ZNF594Q96JF6 807 aaPredicted RBP24.24■■□□□ 1.47
VSX1-202ENST00000376709 THRAP3Q9Y2W1 955 aaKnown RBP24.24■■□□□ 1.47
VSX1-202ENST00000376709 WDR33Q9C0J8 1336 aaKnown RBP24.24■■□□□ 1.47
VSX1-202ENST00000376709 EYA2O00167 538 aa24.23■■□□□ 1.47
VSX1-202ENST00000376709 PSMA5P28066 241 aa24.23■■□□□ 1.47
VSX1-202ENST00000376709 GAS2L3Q86XJ1 694 aa24.23■■□□□ 1.47
VSX1-202ENST00000376709 RFX7Q2KHR2 1363 aa24.23■■□□□ 1.47
VSX1-202ENST00000376709 CAVIN1Q6NZI2 390 aaKnown RBP24.23■■□□□ 1.47
VSX1-202ENST00000376709 GPR108Q9NPR9 543 aa24.23■■□□□ 1.47
VSX1-202ENST00000376709 CYP19A1P11511 503 aaPredicted RBP24.22■■□□□ 1.47
VSX1-202ENST00000376709 LRRC24Q50LG9 513 aa24.22■■□□□ 1.47
VSX1-202ENST00000376709 DDX46Q7L014 1031 aaKnown RBP24.22■■□□□ 1.47
VSX1-202ENST00000376709 A0A0G2JS52 829 aa24.22■■□□□ 1.47
VSX1-202ENST00000376709 TIMM10P62072 90 aa24.22■■□□□ 1.47
VSX1-202ENST00000376709 CCDC57Q2TAC2 916 aa24.22■■□□□ 1.47
VSX1-202ENST00000376709 SPATA31A5Q5VU36 1347 aa24.22■■□□□ 1.47
VSX1-202ENST00000376709 SPATA31A7Q8IWB4 1347 aa24.22■■□□□ 1.47
VSX1-202ENST00000376709 RPAP1Q9BWH6 1393 aaPredicted RBP24.22■■□□□ 1.47
VSX1-202ENST00000376709 CIAO1O76071 339 aa24.21■■□□□ 1.47
VSX1-202ENST00000376709 TRIM28Q13263 835 aaKnown RBP24.21■■□□□ 1.47
VSX1-202ENST00000376709 ZSCAN31Q96LW9 406 aaPredicted RBP24.21■■□□□ 1.47
VSX1-202ENST00000376709 SMC3Q9UQE7 1217 aa24.21■■□□□ 1.47
VSX1-202ENST00000376709 JCADQ9P266 1359 aa24.21■■□□□ 1.47
VSX1-202ENST00000376709 TAF5LO75529 589 aa24.2■■□□□ 1.47
VSX1-202ENST00000376709 SH2B1Q9NRF2 756 aaPredicted RBP24.2■■□□□ 1.47
VSX1-202ENST00000376709 HMG20BQ9P0W2 317 aa24.2■■□□□ 1.47
VSX1-202ENST00000376709 LARGE1O95461 756 aa24.2■■□□□ 1.46
VSX1-202ENST00000376709 MAP3K15Q6ZN16 1313 aa24.19■■□□□ 1.46
VSX1-202ENST00000376709 KBTBD3Q8NAB2 608 aa24.19■■□□□ 1.46
VSX1-202ENST00000376709 FAM89AQ96GI7 184 aa24.19■■□□□ 1.46
VSX1-202ENST00000376709 ACSBG1Q96GR2 724 aa24.19■■□□□ 1.46
VSX1-202ENST00000376709 ZBTB1Q9Y2K1 713 aa24.19■■□□□ 1.46
VSX1-202ENST00000376709 SLIT2O94813 1529 aa24.19■■□□□ 1.46
VSX1-202ENST00000376709 ZNF609O15014 1411 aa24.19■■□□□ 1.46
VSX1-202ENST00000376709 PCCAP05165 728 aaPredicted RBP24.19■■□□□ 1.46
VSX1-202ENST00000376709 BLOC1S2Q6QNY1 142 aa24.19■■□□□ 1.46
VSX1-202ENST00000376709 CCDC83Q8IWF9 413 aa24.19■■□□□ 1.46
VSX1-202ENST00000376709 MARCH10Q8NA82 808 aaPredicted RBP24.19■■□□□ 1.46
VSX1-202ENST00000376709 GPT2Q8TD30 523 aa24.19■■□□□ 1.46
VSX1-202ENST00000376709 UBAP1LF5GYI3 381 aa24.18■■□□□ 1.46
VSX1-202ENST00000376709 PUS3Q9BZE2 481 aaKnown RBP24.18■■□□□ 1.46
VSX1-202ENST00000376709 PAG1Q9NWQ8 432 aa24.18■■□□□ 1.46
VSX1-202ENST00000376709 NWD2Q9ULI1 1742 aa24.18■■□□□ 1.46
VSX1-202ENST00000376709 A0A1B0GUL7 405 aa24.18■■□□□ 1.46
VSX1-202ENST00000376709 GOLIM4O00461 696 aa24.18■■□□□ 1.46
VSX1-202ENST00000376709 FOXD4L6Q3SYB3 417 aaPredicted RBP24.18■■□□□ 1.46
VSX1-202ENST00000376709 MCMDC2Q4G0Z9 681 aa24.18■■□□□ 1.46
VSX1-202ENST00000376709 FOXD4L3Q6VB84 417 aaPredicted RBP24.18■■□□□ 1.46
VSX1-202ENST00000376709 GIGYF2Q6Y7W6 1299 aaKnown RBP24.18■■□□□ 1.46
VSX1-202ENST00000376709 ZBTB38Q8NAP3 1195 aaPredicted RBP24.18■■□□□ 1.46
VSX1-202ENST00000376709 CEP126Q9P2H0 1117 aa24.18■■□□□ 1.46
VSX1-202ENST00000376709 HLFQ16534 295 aa24.17■■□□□ 1.46
VSX1-202ENST00000376709 ZSCAN23Q3MJ62 389 aa24.17■■□□□ 1.46
VSX1-202ENST00000376709 CHGBP05060 677 aa24.16■■□□□ 1.46
VSX1-202ENST00000376709 CCDC85AQ96PX6 553 aaPredicted RBP24.16■■□□□ 1.46
VSX1-202ENST00000376709 SEC62Q99442 399 aaKnown RBP24.16■■□□□ 1.46
VSX1-202ENST00000376709 TAF7LQ5H9L4 462 aa24.16■■□□□ 1.46
VSX1-202ENST00000376709 CCDC129Q6ZRS4 1044 aa24.16■■□□□ 1.46
VSX1-202ENST00000376709 STX6O43752 255 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 MBD3O95983 291 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 SYT1P21579 422 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 GPTP24298 496 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 ME3Q16798 604 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 USPL1Q5W0Q7 1092 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 FAM43AQ8N2R8 423 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 TAF6LQ9Y6J9 622 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 PALLDQ8WX93 1383 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 ANKRD1Q15327 319 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 TSGA10IPQ3SY00 556 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 PLA2G12BQ9BX93 195 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 IFIT1P09914 478 aaKnown RBP24.14■■□□□ 1.45
VSX1-202ENST00000376709 ZSCAN22P10073 491 aaPredicted RBP24.14■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms