RNA–Protein interactions for RNA: ENST00000376709.8

VSX1-202, Transcript of visual system homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VSX1, Length 2,192 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-202ENST00000376709 KIF6Q6ZMV9 814 aa24.28■■□□□ 1.48
VSX1-202ENST00000376709 LARP6Q9BRS8 491 aaKnown RBP24.28■■□□□ 1.48
VSX1-202ENST00000376709 GRPEL1Q9HAV7 217 aa24.28■■□□□ 1.48
VSX1-202ENST00000376709 MED23Q9ULK4 1368 aa24.28■■□□□ 1.48
VSX1-202ENST00000376709 TOM1O60784 492 aa24.27■■□□□ 1.48
VSX1-202ENST00000376709 NCLP19338 710 aaKnown RBP24.27■■□□□ 1.48
VSX1-202ENST00000376709 SLC4A9Q96Q91 983 aa24.27■■□□□ 1.48
VSX1-202ENST00000376709 ZSWIM6Q9HCJ5 1215 aa24.27■■□□□ 1.48
VSX1-202ENST00000376709 PDRG1Q9NUG6 133 aa24.27■■□□□ 1.48
VSX1-202ENST00000376709 TCIRG1Q13488 830 aa24.27■■□□□ 1.48
VSX1-202ENST00000376709 VPS53Q5VIR6 699 aa24.27■■□□□ 1.48
VSX1-202ENST00000376709 ATG9AQ7Z3C6 839 aa24.27■■□□□ 1.48
VSX1-202ENST00000376709 NDUFB9Q9Y6M9 179 aa24.27■■□□□ 1.48
VSX1-202ENST00000376709 IL15P40933 162 aaPredicted RBP24.26■■□□□ 1.47
VSX1-202ENST00000376709 PRIM1P49642 420 aaKnown RBP24.26■■□□□ 1.47
VSX1-202ENST00000376709 RNF20Q5VTR2 975 aa24.26■■□□□ 1.47
VSX1-202ENST00000376709 NEUROD6Q96NK8 337 aa24.26■■□□□ 1.47
VSX1-202ENST00000376709 ISCA1Q9BUE6 129 aa24.26■■□□□ 1.47
VSX1-202ENST00000376709 CCDC9Q9Y3X0 531 aaKnown RBP24.26■■□□□ 1.47
VSX1-202ENST00000376709 ZSCAN21Q9Y5A6 473 aaPredicted RBP24.26■■□□□ 1.47
VSX1-202ENST00000376709 ZNF589Q86UQ0 364 aaPredicted RBP24.25■■□□□ 1.47
VSX1-202ENST00000376709 CHAMP1Q96JM3 812 aa24.25■■□□□ 1.47
VSX1-202ENST00000376709 HAUS7Q99871 368 aa24.25■■□□□ 1.47
VSX1-202ENST00000376709 DOT1LQ8TEK3 1739 aa24.25■■□□□ 1.47
VSX1-202ENST00000376709 SLC27A2O14975 620 aa24.25■■□□□ 1.47
VSX1-202ENST00000376709 CDCA7Q9BWT1 371 aaPredicted RBP24.25■■□□□ 1.47
VSX1-202ENST00000376709 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.24■■□□□ 1.47
VSX1-202ENST00000376709 DDB1Q16531 1140 aa24.24■■□□□ 1.47
VSX1-202ENST00000376709 ZNF594Q96JF6 807 aaPredicted RBP24.24■■□□□ 1.47
VSX1-202ENST00000376709 THRAP3Q9Y2W1 955 aaKnown RBP24.24■■□□□ 1.47
VSX1-202ENST00000376709 WDR33Q9C0J8 1336 aaKnown RBP24.24■■□□□ 1.47
VSX1-202ENST00000376709 EYA2O00167 538 aa24.23■■□□□ 1.47
VSX1-202ENST00000376709 PSMA5P28066 241 aa24.23■■□□□ 1.47
VSX1-202ENST00000376709 GAS2L3Q86XJ1 694 aa24.23■■□□□ 1.47
VSX1-202ENST00000376709 RFX7Q2KHR2 1363 aa24.23■■□□□ 1.47
VSX1-202ENST00000376709 CAVIN1Q6NZI2 390 aaKnown RBP24.23■■□□□ 1.47
VSX1-202ENST00000376709 GPR108Q9NPR9 543 aa24.23■■□□□ 1.47
VSX1-202ENST00000376709 CYP19A1P11511 503 aaPredicted RBP24.22■■□□□ 1.47
VSX1-202ENST00000376709 LRRC24Q50LG9 513 aa24.22■■□□□ 1.47
VSX1-202ENST00000376709 DDX46Q7L014 1031 aaKnown RBP24.22■■□□□ 1.47
VSX1-202ENST00000376709 A0A0G2JS52 829 aa24.22■■□□□ 1.47
VSX1-202ENST00000376709 TIMM10P62072 90 aa24.22■■□□□ 1.47
VSX1-202ENST00000376709 CCDC57Q2TAC2 916 aa24.22■■□□□ 1.47
VSX1-202ENST00000376709 SPATA31A5Q5VU36 1347 aa24.22■■□□□ 1.47
VSX1-202ENST00000376709 SPATA31A7Q8IWB4 1347 aa24.22■■□□□ 1.47
VSX1-202ENST00000376709 RPAP1Q9BWH6 1393 aaPredicted RBP24.22■■□□□ 1.47
VSX1-202ENST00000376709 CIAO1O76071 339 aa24.21■■□□□ 1.47
VSX1-202ENST00000376709 TRIM28Q13263 835 aaKnown RBP24.21■■□□□ 1.47
VSX1-202ENST00000376709 ZSCAN31Q96LW9 406 aaPredicted RBP24.21■■□□□ 1.47
VSX1-202ENST00000376709 SMC3Q9UQE7 1217 aa24.21■■□□□ 1.47
VSX1-202ENST00000376709 JCADQ9P266 1359 aa24.21■■□□□ 1.47
VSX1-202ENST00000376709 TAF5LO75529 589 aa24.2■■□□□ 1.47
VSX1-202ENST00000376709 SH2B1Q9NRF2 756 aaPredicted RBP24.2■■□□□ 1.47
VSX1-202ENST00000376709 HMG20BQ9P0W2 317 aa24.2■■□□□ 1.47
VSX1-202ENST00000376709 LARGE1O95461 756 aa24.2■■□□□ 1.46
VSX1-202ENST00000376709 MAP3K15Q6ZN16 1313 aa24.19■■□□□ 1.46
VSX1-202ENST00000376709 KBTBD3Q8NAB2 608 aa24.19■■□□□ 1.46
VSX1-202ENST00000376709 FAM89AQ96GI7 184 aa24.19■■□□□ 1.46
VSX1-202ENST00000376709 ACSBG1Q96GR2 724 aa24.19■■□□□ 1.46
VSX1-202ENST00000376709 ZBTB1Q9Y2K1 713 aa24.19■■□□□ 1.46
VSX1-202ENST00000376709 SLIT2O94813 1529 aa24.19■■□□□ 1.46
VSX1-202ENST00000376709 ZNF609O15014 1411 aa24.19■■□□□ 1.46
VSX1-202ENST00000376709 PCCAP05165 728 aaPredicted RBP24.19■■□□□ 1.46
VSX1-202ENST00000376709 BLOC1S2Q6QNY1 142 aa24.19■■□□□ 1.46
VSX1-202ENST00000376709 CCDC83Q8IWF9 413 aa24.19■■□□□ 1.46
VSX1-202ENST00000376709 MARCH10Q8NA82 808 aaPredicted RBP24.19■■□□□ 1.46
VSX1-202ENST00000376709 GPT2Q8TD30 523 aa24.19■■□□□ 1.46
VSX1-202ENST00000376709 UBAP1LF5GYI3 381 aa24.18■■□□□ 1.46
VSX1-202ENST00000376709 PUS3Q9BZE2 481 aaKnown RBP24.18■■□□□ 1.46
VSX1-202ENST00000376709 PAG1Q9NWQ8 432 aa24.18■■□□□ 1.46
VSX1-202ENST00000376709 NWD2Q9ULI1 1742 aa24.18■■□□□ 1.46
VSX1-202ENST00000376709 A0A1B0GUL7 405 aa24.18■■□□□ 1.46
VSX1-202ENST00000376709 GOLIM4O00461 696 aa24.18■■□□□ 1.46
VSX1-202ENST00000376709 FOXD4L6Q3SYB3 417 aaPredicted RBP24.18■■□□□ 1.46
VSX1-202ENST00000376709 MCMDC2Q4G0Z9 681 aa24.18■■□□□ 1.46
VSX1-202ENST00000376709 FOXD4L3Q6VB84 417 aaPredicted RBP24.18■■□□□ 1.46
VSX1-202ENST00000376709 GIGYF2Q6Y7W6 1299 aaKnown RBP24.18■■□□□ 1.46
VSX1-202ENST00000376709 ZBTB38Q8NAP3 1195 aaPredicted RBP24.18■■□□□ 1.46
VSX1-202ENST00000376709 CEP126Q9P2H0 1117 aa24.18■■□□□ 1.46
VSX1-202ENST00000376709 HLFQ16534 295 aa24.17■■□□□ 1.46
VSX1-202ENST00000376709 ZSCAN23Q3MJ62 389 aa24.17■■□□□ 1.46
VSX1-202ENST00000376709 CHGBP05060 677 aa24.16■■□□□ 1.46
VSX1-202ENST00000376709 CCDC85AQ96PX6 553 aaPredicted RBP24.16■■□□□ 1.46
VSX1-202ENST00000376709 SEC62Q99442 399 aaKnown RBP24.16■■□□□ 1.46
VSX1-202ENST00000376709 TAF7LQ5H9L4 462 aa24.16■■□□□ 1.46
VSX1-202ENST00000376709 CCDC129Q6ZRS4 1044 aa24.16■■□□□ 1.46
VSX1-202ENST00000376709 STX6O43752 255 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 MBD3O95983 291 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 SYT1P21579 422 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 GPTP24298 496 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 ME3Q16798 604 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 USPL1Q5W0Q7 1092 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 FAM43AQ8N2R8 423 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 TAF6LQ9Y6J9 622 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 PALLDQ8WX93 1383 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 ANKRD1Q15327 319 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 TSGA10IPQ3SY00 556 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 PLA2G12BQ9BX93 195 aa24.15■■□□□ 1.46
VSX1-202ENST00000376709 IFIT1P09914 478 aaKnown RBP24.14■■□□□ 1.45
VSX1-202ENST00000376709 ZSCAN22P10073 491 aaPredicted RBP24.14■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms