RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 LAMB2P55268 1798 aa16.83■□□□□ 0.29
PTPRF-202ENST00000372405 IL15P40933 162 aaPredicted RBP16.83■□□□□ 0.28
PTPRF-202ENST00000372405 CNTROBQ8N137 903 aa16.82■□□□□ 0.28
PTPRF-202ENST00000372405 NIP7Q9Y221 180 aaKnown RBP eCLIP16.82■□□□□ 0.28
PTPRF-202ENST00000372405 FAM177BA6PVY3 158 aa16.82■□□□□ 0.28
PTPRF-202ENST00000372405 PDE8AO60658 829 aa16.82■□□□□ 0.28
PTPRF-202ENST00000372405 RPS6KA4O75676 772 aa16.82■□□□□ 0.28
PTPRF-202ENST00000372405 NTSR2O95665 410 aa16.82■□□□□ 0.28
PTPRF-202ENST00000372405 IFIT5Q13325 482 aaKnown RBP16.82■□□□□ 0.28
PTPRF-202ENST00000372405 KRT27Q7Z3Y8 459 aa16.82■□□□□ 0.28
PTPRF-202ENST00000372405 DBNDD2Q9BQY9 259 aa16.82■□□□□ 0.28
PTPRF-202ENST00000372405 TBC1D2Q9BYX2 928 aa16.82■□□□□ 0.28
PTPRF-202ENST00000372405 BCL2L12Q9HB09 334 aa16.82■□□□□ 0.28
PTPRF-202ENST00000372405 SH3TC1Q8TE82 1336 aa16.82■□□□□ 0.28
PTPRF-202ENST00000372405 C4AP0C0L4 1744 aa16.82■□□□□ 0.28
PTPRF-202ENST00000372405 ZNF609O15014 1411 aa16.81■□□□□ 0.28
PTPRF-202ENST00000372405 EIF5BO60841 1220 aaKnown RBP16.81■□□□□ 0.28
PTPRF-202ENST00000372405 ITGA6P23229 1130 aa16.81■□□□□ 0.28
PTPRF-202ENST00000372405 PARP10Q53GL7 1025 aa16.81■□□□□ 0.28
PTPRF-202ENST00000372405 CLEC4GQ6UXB4 293 aa16.81■□□□□ 0.28
PTPRF-202ENST00000372405 UTP14AQ9BVJ6 771 aaKnown RBP16.81■□□□□ 0.28
PTPRF-202ENST00000372405 LRRC4BQ9NT99 713 aa16.81■□□□□ 0.28
PTPRF-202ENST00000372405 CASZ1Q86V15 1759 aa16.81■□□□□ 0.28
PTPRF-202ENST00000372405 GNPATO15228 680 aa16.8■□□□□ 0.28
PTPRF-202ENST00000372405 REC8O95072 547 aa16.8■□□□□ 0.28
PTPRF-202ENST00000372405 HCLS1P14317 486 aaPredicted RBP16.8■□□□□ 0.28
PTPRF-202ENST00000372405 BOLA2Q9H3K6 86 aa16.8■□□□□ 0.28
PTPRF-202ENST00000372405 GPR108Q9NPR9 543 aa16.8■□□□□ 0.28
PTPRF-202ENST00000372405 LRP5O75197 1615 aa16.8■□□□□ 0.28
PTPRF-202ENST00000372405 FAM196AQ6ZSG2 479 aa16.8■□□□□ 0.28
PTPRF-202ENST00000372405 FBXO3Q9UK99 471 aa16.8■□□□□ 0.28
PTPRF-202ENST00000372405 ZNF652Q9Y2D9 606 aa16.8■□□□□ 0.28
PTPRF-202ENST00000372405 RIC1Q4ADV7 1423 aa16.8■□□□□ 0.28
PTPRF-202ENST00000372405 ATP5JP18859 108 aa16.79■□□□□ 0.28
PTPRF-202ENST00000372405 TIMM10P62072 90 aa16.79■□□□□ 0.28
PTPRF-202ENST00000372405 SRP68Q9UHB9 627 aaKnown RBP16.79■□□□□ 0.28
PTPRF-202ENST00000372405 ERICH6Q7L0X2 663 aa16.78■□□□□ 0.28
PTPRF-202ENST00000372405 EVI5LQ96CN4 794 aa16.78■□□□□ 0.28
PTPRF-202ENST00000372405 AK7Q96M32 723 aa16.78■□□□□ 0.28
PTPRF-202ENST00000372405 NARFQ9UHQ1 456 aa16.78■□□□□ 0.28
PTPRF-202ENST00000372405 RIPOR2Q9Y4F9 1068 aa16.78■□□□□ 0.28
PTPRF-202ENST00000372405 COL24A1Q17RW2 1714 aa16.78■□□□□ 0.28
PTPRF-202ENST00000372405 BECN1Q14457 450 aa16.78■□□□□ 0.28
PTPRF-202ENST00000372405 USPL1Q5W0Q7 1092 aa16.78■□□□□ 0.28
PTPRF-202ENST00000372405 ANKRD18BA2A2Z9 1011 aa16.77■□□□□ 0.28
PTPRF-202ENST00000372405 RGL2O15211 777 aa16.77■□□□□ 0.28
PTPRF-202ENST00000372405 SGSM2O43147 1006 aa16.77■□□□□ 0.28
PTPRF-202ENST00000372405 RBM6P78332 1123 aaKnown RBP16.77■□□□□ 0.28
PTPRF-202ENST00000372405 TBC1D9BQ66K14 1250 aa16.77■□□□□ 0.28
PTPRF-202ENST00000372405 ZNF772Q68DY9 489 aaPredicted RBP16.77■□□□□ 0.28
PTPRF-202ENST00000372405 EDC3Q96F86 508 aaKnown RBP16.77■□□□□ 0.28
PTPRF-202ENST00000372405 DAXXQ9UER7 740 aaPredicted RBP16.77■□□□□ 0.28
PTPRF-202ENST00000372405 COL4A1P02462 1669 aa16.77■□□□□ 0.28
PTPRF-202ENST00000372405 UBR3Q6ZT12 1888 aa16.77■□□□□ 0.28
PTPRF-202ENST00000372405 A0A1B0GUL7 405 aa16.77■□□□□ 0.27
PTPRF-202ENST00000372405 TRIM37O94972 964 aa16.77■□□□□ 0.27
PTPRF-202ENST00000372405 TAF7LQ5H9L4 462 aa16.77■□□□□ 0.27
PTPRF-202ENST00000372405 ARHGEF1Q92888 912 aaKnown RBP16.77■□□□□ 0.27
PTPRF-202ENST00000372405 CEP126Q9P2H0 1117 aa16.77■□□□□ 0.27
PTPRF-202ENST00000372405 RTCBQ9Y3I0 505 aaKnown RBP16.77■□□□□ 0.27
PTPRF-202ENST00000372405 NDUFB9Q9Y6M9 179 aa16.77■□□□□ 0.27
PTPRF-202ENST00000372405 SPEF2Q9C093 1822 aa16.76■□□□□ 0.27
PTPRF-202ENST00000372405 CD2BP2O95400 341 aaKnown RBP16.76■□□□□ 0.27
PTPRF-202ENST00000372405 NEUROD6Q96NK8 337 aa16.76■□□□□ 0.27
PTPRF-202ENST00000372405 CWC27Q6UX04 472 aaKnown RBP16.75■□□□□ 0.27
PTPRF-202ENST00000372405 LDHAL6AQ6ZMR3 332 aa16.75■□□□□ 0.27
PTPRF-202ENST00000372405 ANO2Q9NQ90 1003 aa16.75■□□□□ 0.27
PTPRF-202ENST00000372405 VGLL2Q8N8G2 317 aa16.75■□□□□ 0.27
PTPRF-202ENST00000372405 ERFEQ4G0M1 354 aa16.74■□□□□ 0.27
PTPRF-202ENST00000372405 BICDL1Q6ZP65 573 aa16.74■□□□□ 0.27
PTPRF-202ENST00000372405 SNX21Q969T3 373 aa16.74■□□□□ 0.27
PTPRF-202ENST00000372405 HAUS7Q99871 368 aa16.74■□□□□ 0.27
PTPRF-202ENST00000372405 SEC31BQ9NQW1 1179 aa16.74■□□□□ 0.27
PTPRF-202ENST00000372405 TAF1P21675 1872 aa16.73■□□□□ 0.27
PTPRF-202ENST00000372405 ADORA1P30542 326 aa16.73■□□□□ 0.27
PTPRF-202ENST00000372405 C3orf67Q6ZVT6 689 aa16.73■□□□□ 0.27
PTPRF-202ENST00000372405 RTL9Q8NET4 1388 aa16.73■□□□□ 0.27
PTPRF-202ENST00000372405 FAM227BQ96M60 508 aa16.73■□□□□ 0.27
PTPRF-202ENST00000372405 LSG1Q9H089 658 aaKnown RBP16.73■□□□□ 0.27
PTPRF-202ENST00000372405 DIAPH3Q9NSV4 1193 aa16.73■□□□□ 0.27
PTPRF-202ENST00000372405 PALD1Q9ULE6 856 aa16.73■□□□□ 0.27
PTPRF-202ENST00000372405 ABCC12Q96J65 1359 aa16.73■□□□□ 0.27
PTPRF-202ENST00000372405 ZPR1O75312 459 aa16.72■□□□□ 0.27
PTPRF-202ENST00000372405 PHF14O94880 888 aa16.72■□□□□ 0.27
PTPRF-202ENST00000372405 METTL24Q5JXM2 366 aa16.72■□□□□ 0.27
PTPRF-202ENST00000372405 XAGE2Q96GT9 111 aa16.72■□□□□ 0.27
PTPRF-202ENST00000372405 FSD1Q9BTV5 496 aa16.72■□□□□ 0.27
PTPRF-202ENST00000372405 CNNM1Q9NRU3 951 aa16.72■□□□□ 0.27
PTPRF-202ENST00000372405 NMIQ13287 307 aaPredicted RBP16.71■□□□□ 0.27
PTPRF-202ENST00000372405 PROM2Q8N271 834 aa16.71■□□□□ 0.27
PTPRF-202ENST00000372405 DNAJC2Q99543 621 aaKnown RBP16.71■□□□□ 0.27
PTPRF-202ENST00000372405 AKAP2Q9Y2D5 859 aa16.71■□□□□ 0.27
PTPRF-202ENST00000372405 RAD50Q92878 1312 aa16.71■□□□□ 0.27
PTPRF-202ENST00000372405 RABEP1Q15276 862 aa16.71■□□□□ 0.27
PTPRF-202ENST00000372405 CCDC152Q4G0S7 254 aa16.71■□□□□ 0.27
PTPRF-202ENST00000372405 SLC27A3Q5K4L6 730 aa16.71■□□□□ 0.27
PTPRF-202ENST00000372405 TRAPPC3LQ5T215 181 aa16.71■□□□□ 0.27
PTPRF-202ENST00000372405 ARAP2Q8WZ64 1704 aa16.71■□□□□ 0.26
PTPRF-202ENST00000372405 AKAP11Q9UKA4 1901 aa16.7■□□□□ 0.26
PTPRF-202ENST00000372405 A0A0D9SFI3 127 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms