RNA–Protein interactions for RNA: ENST00000368436.1

CKS1B-202, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 2 BASIC

Gene CKS1B, Length 820 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-202ENST00000368436 MPNDQ8N594 471 aa20.84■□□□□ 0.93
CKS1B-202ENST00000368436 HYPKQ9NX55 129 aa20.84■□□□□ 0.93
CKS1B-202ENST00000368436 ZNRF3Q9ULT6 936 aa20.84■□□□□ 0.93
CKS1B-202ENST00000368436 USP50Q70EL3 339 aaPredicted RBP20.83■□□□□ 0.93
CKS1B-202ENST00000368436 TMC4Q7Z404 712 aa20.83■□□□□ 0.93
CKS1B-202ENST00000368436 VEGFBP49765 207 aa20.82■□□□□ 0.92
CKS1B-202ENST00000368436 CXCL9Q07325 125 aa20.82■□□□□ 0.92
CKS1B-202ENST00000368436 KIAA2012Q0VF49 1180 aa20.82■□□□□ 0.92
CKS1B-202ENST00000368436 TRIM28Q13263 835 aaKnown RBP20.82■□□□□ 0.92
CKS1B-202ENST00000368436 TNS4Q8IZW8 715 aa20.82■□□□□ 0.92
CKS1B-202ENST00000368436 DUOX1Q9NRD9 1551 aa20.81■□□□□ 0.92
CKS1B-202ENST00000368436 APAF1O14727 1248 aa20.81■□□□□ 0.92
CKS1B-202ENST00000368436 SF3B3Q15393 1217 aaKnown RBP20.81■□□□□ 0.92
CKS1B-202ENST00000368436 IFT57Q9NWB7 429 aa20.81■□□□□ 0.92
CKS1B-202ENST00000368436 GPRC5DQ9NZD1 345 aa20.81■□□□□ 0.92
CKS1B-202ENST00000368436 TRPM7Q96QT4 1865 aa20.81■□□□□ 0.92
CKS1B-202ENST00000368436 RASSF10A6NK89 507 aa20.8■□□□□ 0.92
CKS1B-202ENST00000368436 ATP5J2-PTCD1G3V325 749 aa20.8■□□□□ 0.92
CKS1B-202ENST00000368436 ZNF428Q96B54 188 aa20.8■□□□□ 0.92
CKS1B-202ENST00000368436 FAM89AQ96GI7 184 aa20.8■□□□□ 0.92
CKS1B-202ENST00000368436 GNAI1P63096 354 aa20.79■□□□□ 0.92
CKS1B-202ENST00000368436 DEFB115Q30KQ5 88 aa20.79■□□□□ 0.92
CKS1B-202ENST00000368436 ADARB2Q9NS39 739 aaKnown RBP20.79■□□□□ 0.92
CKS1B-202ENST00000368436 CALD1Q05682 793 aaKnown RBP20.78■□□□□ 0.92
CKS1B-202ENST00000368436 COL4A1P02462 1669 aa20.77■□□□□ 0.92
CKS1B-202ENST00000368436 FOXN1O15353 648 aa20.77■□□□□ 0.92
CKS1B-202ENST00000368436 CIAPIN1Q6FI81 312 aa20.77■□□□□ 0.92
CKS1B-202ENST00000368436 CELF1Q92879 486 aaKnown RBP20.77■□□□□ 0.92
CKS1B-202ENST00000368436 CDHR2Q9BYE9 1310 aa20.77■□□□□ 0.91
CKS1B-202ENST00000368436 GMPSP49915 693 aaPredicted RBP20.76■□□□□ 0.91
CKS1B-202ENST00000368436 TNIP1Q15025 636 aa20.76■□□□□ 0.91
CKS1B-202ENST00000368436 RIC3Q7Z5B4 369 aa20.76■□□□□ 0.91
CKS1B-202ENST00000368436 PHAXQ9H814 394 aaKnown RBP20.76■□□□□ 0.91
CKS1B-202ENST00000368436 YDJCA8MPS7 323 aa20.75■□□□□ 0.91
CKS1B-202ENST00000368436 FMR1Q06787 632 aaKnown RBP eCLIP20.75■□□□□ 0.91
CKS1B-202ENST00000368436 WBP1LQ9NX94 342 aa20.75■□□□□ 0.91
CKS1B-202ENST00000368436 PGAP2Q9UHJ9 254 aa20.75■□□□□ 0.91
CKS1B-202ENST00000368436 ABT1Q9ULW3 272 aaKnown RBP20.75■□□□□ 0.91
CKS1B-202ENST00000368436 ELL2O00472 640 aaPredicted RBP20.74■□□□□ 0.91
CKS1B-202ENST00000368436 IRS4O14654 1257 aaPredicted RBP20.74■□□□□ 0.91
CKS1B-202ENST00000368436 RAD17O75943 681 aa20.74■□□□□ 0.91
CKS1B-202ENST00000368436 GOLGA2Q08379 1002 aa20.74■□□□□ 0.91
CKS1B-202ENST00000368436 RTL5Q5HYW3 569 aaPredicted RBP20.74■□□□□ 0.91
CKS1B-202ENST00000368436 CST9Q5W186 159 aa20.74■□□□□ 0.91
CKS1B-202ENST00000368436 ZBTB38Q8NAP3 1195 aaPredicted RBP20.74■□□□□ 0.91
CKS1B-202ENST00000368436 C8orf58Q8NAV2 365 aa20.74■□□□□ 0.91
CKS1B-202ENST00000368436 WDR33Q9C0J8 1336 aaKnown RBP20.74■□□□□ 0.91
CKS1B-202ENST00000368436 TRAF5O00463 557 aa20.73■□□□□ 0.91
CKS1B-202ENST00000368436 WASHC4Q2M389 1173 aa20.73■□□□□ 0.91
CKS1B-202ENST00000368436 PRDM10Q9NQV6 1147 aa20.73■□□□□ 0.91
CKS1B-202ENST00000368436 NSFL1CQ9UNZ2 370 aaKnown RBP20.73■□□□□ 0.91
CKS1B-202ENST00000368436 THSD7BQ9C0I4 1608 aa20.72■□□□□ 0.91
CKS1B-202ENST00000368436 CTCFP49711 727 aaPredicted RBP20.72■□□□□ 0.91
CKS1B-202ENST00000368436 GPSM2P81274 684 aa20.72■□□□□ 0.91
CKS1B-202ENST00000368436 AIDAQ96BJ3 306 aa20.72■□□□□ 0.91
CKS1B-202ENST00000368436 BCL2L13Q9BXK5 485 aa20.72■□□□□ 0.91
CKS1B-202ENST00000368436 HIRAP54198 1017 aaPredicted RBP20.71■□□□□ 0.91
CKS1B-202ENST00000368436 RPS8P62241 208 aaKnown RBP20.71■□□□□ 0.91
CKS1B-202ENST00000368436 CCDC191Q8NCU4 936 aa20.71■□□□□ 0.91
CKS1B-202ENST00000368436 ZC3H15Q8WU90 426 aaKnown RBP20.71■□□□□ 0.91
CKS1B-202ENST00000368436 MYD88Q99836 296 aa20.71■□□□□ 0.91
CKS1B-202ENST00000368436 CHMP4AQ9BY43 222 aa20.71■□□□□ 0.91
CKS1B-202ENST00000368436 POLLQ9UGP5 575 aa20.71■□□□□ 0.91
CKS1B-202ENST00000368436 CNOT7Q9UIV1 285 aaKnown RBP20.71■□□□□ 0.91
CKS1B-202ENST00000368436 CAPN15O75808 1086 aa20.7■□□□□ 0.9
CKS1B-202ENST00000368436 HSP90B1P14625 803 aaKnown RBP20.7■□□□□ 0.9
CKS1B-202ENST00000368436 TLL2Q9Y6L7 1015 aa20.7■□□□□ 0.9
CKS1B-202ENST00000368436 PCCAP05165 728 aaPredicted RBP20.69■□□□□ 0.9
CKS1B-202ENST00000368436 CCDC30Q5VVM6 783 aa20.69■□□□□ 0.9
CKS1B-202ENST00000368436 METTL22Q9BUU2 404 aaPredicted RBP20.69■□□□□ 0.9
CKS1B-202ENST00000368436 C6orf229H3BNL8 230 aa20.68■□□□□ 0.9
CKS1B-202ENST00000368436 RIMBP2O15034 1052 aa20.68■□□□□ 0.9
CKS1B-202ENST00000368436 ECE1P42892 770 aa20.68■□□□□ 0.9
CKS1B-202ENST00000368436 MAP2K1Q02750 393 aaPredicted RBP20.68■□□□□ 0.9
CKS1B-202ENST00000368436 TBC1D16Q8TBP0 767 aa20.68■□□□□ 0.9
CKS1B-202ENST00000368436 TRPM4Q8TD43 1214 aa20.68■□□□□ 0.9
CKS1B-202ENST00000368436 DPF2Q92785 391 aa20.68■□□□□ 0.9
CKS1B-202ENST00000368436 CAPNS2Q96L46 248 aa20.68■□□□□ 0.9
CKS1B-202ENST00000368436 EYA3Q99504 573 aa20.68■□□□□ 0.9
CKS1B-202ENST00000368436 DBNDD1Q9H9R9 158 aa20.68■□□□□ 0.9
CKS1B-202ENST00000368436 SEC31BQ9NQW1 1179 aa20.68■□□□□ 0.9
CKS1B-202ENST00000368436 CWC25Q9NXE8 425 aaPredicted RBP20.68■□□□□ 0.9
CKS1B-202ENST00000368436 PODXL2Q9NZ53 605 aa20.68■□□□□ 0.9
CKS1B-202ENST00000368436 SHTN1A0MZ66 631 aa20.67■□□□□ 0.9
CKS1B-202ENST00000368436 H7C1D1 291 aa20.67■□□□□ 0.9
CKS1B-202ENST00000368436 PSMD14O00487 310 aa20.67■□□□□ 0.9
CKS1B-202ENST00000368436 PDE8AO60658 829 aa20.67■□□□□ 0.9
CKS1B-202ENST00000368436 DDX58O95786 925 aaKnown RBP20.67■□□□□ 0.9
CKS1B-202ENST00000368436 CCDC27Q2M243 656 aa20.67■□□□□ 0.9
CKS1B-202ENST00000368436 CCDC184Q52MB2 194 aa20.67■□□□□ 0.9
CKS1B-202ENST00000368436 TSPYL6Q8N831 410 aa20.67■□□□□ 0.9
CKS1B-202ENST00000368436 GLIS2Q9BZE0 524 aaPredicted RBP20.67■□□□□ 0.9
CKS1B-202ENST00000368436 ZBTB12Q9Y330 459 aaPredicted RBP20.67■□□□□ 0.9
CKS1B-202ENST00000368436 MICALL2Q8IY33 904 aa20.66■□□□□ 0.9
CKS1B-202ENST00000368436 SCN9AQ15858 1988 aa20.66■□□□□ 0.9
CKS1B-202ENST00000368436 ECE2O60344 883 aa20.65■□□□□ 0.9
CKS1B-202ENST00000368436 CELF2O95319 508 aaKnown RBP20.65■□□□□ 0.9
CKS1B-202ENST00000368436 LBX1P52954 281 aa20.65■□□□□ 0.9
CKS1B-202ENST00000368436 CCDC152Q4G0S7 254 aa20.65■□□□□ 0.9
CKS1B-202ENST00000368436 CYP4F22Q6NT55 531 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms