RNA–Protein interactions for RNA: ENST00000361198.9

LDB1-201, Transcript of LIM domain binding 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDB1, Length 2,285 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-201ENST00000361198 BRD1O95696 1058 aa27.13■■□□□ 1.93
LDB1-201ENST00000361198 LRRC24Q50LG9 513 aa27.13■■□□□ 1.93
LDB1-201ENST00000361198 CREB3L3Q68CJ9 461 aa27.13■■□□□ 1.93
LDB1-201ENST00000361198 CAVIN1Q6NZI2 390 aaKnown RBP27.13■■□□□ 1.93
LDB1-201ENST00000361198 KIF6Q6ZMV9 814 aa27.13■■□□□ 1.93
LDB1-201ENST00000361198 ZNF589Q86UQ0 364 aaPredicted RBP27.13■■□□□ 1.93
LDB1-201ENST00000361198 IL15P40933 162 aaPredicted RBP27.13■■□□□ 1.93
LDB1-201ENST00000361198 KCNJ4P48050 445 aa27.13■■□□□ 1.93
LDB1-201ENST00000361198 TRIM28Q13263 835 aaKnown RBP27.13■■□□□ 1.93
LDB1-201ENST00000361198 CHAMP1Q96JM3 812 aa27.13■■□□□ 1.93
LDB1-201ENST00000361198 DNAJC2Q99543 621 aaKnown RBP27.13■■□□□ 1.93
LDB1-201ENST00000361198 HAUS7Q99871 368 aa27.12■■□□□ 1.93
LDB1-201ENST00000361198 TM6SF1Q9BZW5 370 aa27.12■■□□□ 1.93
LDB1-201ENST00000361198 ZSWIM6Q9HCJ5 1215 aa27.12■■□□□ 1.93
LDB1-201ENST00000361198 LIMCH1Q9UPQ0 1083 aa27.12■■□□□ 1.93
LDB1-201ENST00000361198 CCDC9Q9Y3X0 531 aaKnown RBP27.12■■□□□ 1.93
LDB1-201ENST00000361198 PLCH1Q4KWH8 1693 aa27.12■■□□□ 1.93
LDB1-201ENST00000361198 EYA2O00167 538 aa27.11■■□□□ 1.93
LDB1-201ENST00000361198 PRPF40AO75400 957 aaKnown RBP27.11■■□□□ 1.93
LDB1-201ENST00000361198 ZKSCAN1P17029 563 aaPredicted RBP27.11■■□□□ 1.93
LDB1-201ENST00000361198 TIMM10P62072 90 aa27.11■■□□□ 1.93
LDB1-201ENST00000361198 SYTL4Q96C24 671 aaPredicted RBP27.11■■□□□ 1.93
LDB1-201ENST00000361198 NEUROD6Q96NK8 337 aa27.11■■□□□ 1.93
LDB1-201ENST00000361198 GPT2Q8TD30 523 aa27.1■■□□□ 1.93
LDB1-201ENST00000361198 GPR108Q9NPR9 543 aa27.1■■□□□ 1.93
LDB1-201ENST00000361198 FAM89AQ96GI7 184 aa27.1■■□□□ 1.93
LDB1-201ENST00000361198 PUS3Q9BZE2 481 aaKnown RBP27.1■■□□□ 1.93
LDB1-201ENST00000361198 SLC27A2O14975 620 aa27.09■■□□□ 1.93
LDB1-201ENST00000361198 VPS53Q5VIR6 699 aa27.09■■□□□ 1.93
LDB1-201ENST00000361198 CYP46A1Q9Y6A2 500 aa27.09■■□□□ 1.93
LDB1-201ENST00000361198 MAP3K15Q6ZN16 1313 aa27.09■■□□□ 1.93
LDB1-201ENST00000361198 LRP6O75581 1613 aa27.09■■□□□ 1.93
LDB1-201ENST00000361198 CHGBP05060 677 aa27.09■■□□□ 1.93
LDB1-201ENST00000361198 CYP19A1P11511 503 aaPredicted RBP27.09■■□□□ 1.93
LDB1-201ENST00000361198 PDRG1Q9NUG6 133 aa27.09■■□□□ 1.93
LDB1-201ENST00000361198 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.08■■□□□ 1.93
LDB1-201ENST00000361198 HLFQ16534 295 aa27.08■■□□□ 1.93
LDB1-201ENST00000361198 GIGYF2Q6Y7W6 1299 aaKnown RBP27.08■■□□□ 1.93
LDB1-201ENST00000361198 DDX46Q7L014 1031 aaKnown RBP27.08■■□□□ 1.93
LDB1-201ENST00000361198 JCADQ9P266 1359 aa27.08■■□□□ 1.92
LDB1-201ENST00000361198 CIAO1O76071 339 aa27.07■■□□□ 1.92
LDB1-201ENST00000361198 PCCAP05165 728 aaPredicted RBP27.07■■□□□ 1.92
LDB1-201ENST00000361198 NCLP19338 710 aaKnown RBP27.07■■□□□ 1.92
LDB1-201ENST00000361198 TAF5LO75529 589 aa27.07■■□□□ 1.92
LDB1-201ENST00000361198 ADAMTS2O95450 1211 aa27.07■■□□□ 1.92
LDB1-201ENST00000361198 LARGE1O95461 756 aa27.06■■□□□ 1.92
LDB1-201ENST00000361198 CCDC57Q2TAC2 916 aa27.06■■□□□ 1.92
LDB1-201ENST00000361198 ANP32BQ92688 251 aaKnown RBP27.06■■□□□ 1.92
LDB1-201ENST00000361198 ZBTB1Q9Y2K1 713 aa27.06■■□□□ 1.92
LDB1-201ENST00000361198 RFX7Q2KHR2 1363 aa27.06■■□□□ 1.92
LDB1-201ENST00000361198 PRIM1P49642 420 aaKnown RBP27.06■■□□□ 1.92
LDB1-201ENST00000361198 COL9A3Q14050 684 aaPredicted RBP27.06■■□□□ 1.92
LDB1-201ENST00000361198 ZBTB38Q8NAP3 1195 aaPredicted RBP27.06■■□□□ 1.92
LDB1-201ENST00000361198 WNK3Q9BYP7 1800 aa27.06■■□□□ 1.92
LDB1-201ENST00000361198 RPAP1Q9BWH6 1393 aaPredicted RBP27.05■■□□□ 1.92
LDB1-201ENST00000361198 ZNF609O15014 1411 aa27.05■■□□□ 1.92
LDB1-201ENST00000361198 CCDC85AQ96PX6 553 aaPredicted RBP27.05■■□□□ 1.92
LDB1-201ENST00000361198 SEC62Q99442 399 aaKnown RBP27.05■■□□□ 1.92
LDB1-201ENST00000361198 TAF6LQ9Y6J9 622 aa27.05■■□□□ 1.92
LDB1-201ENST00000361198 A0A1B0GUL7 405 aa27.04■■□□□ 1.92
LDB1-201ENST00000361198 GPTP24298 496 aa27.04■■□□□ 1.92
LDB1-201ENST00000361198 RNF20Q5VTR2 975 aa27.04■■□□□ 1.92
LDB1-201ENST00000361198 SYNE4Q8N205 404 aa27.04■■□□□ 1.92
LDB1-201ENST00000361198 KBTBD3Q8NAB2 608 aa27.04■■□□□ 1.92
LDB1-201ENST00000361198 PLA2G12BQ9BX93 195 aa27.04■■□□□ 1.92
LDB1-201ENST00000361198 CSF1RP07333 972 aa27.02■■□□□ 1.92
LDB1-201ENST00000361198 CCDC129Q6ZRS4 1044 aa27.02■■□□□ 1.92
LDB1-201ENST00000361198 ZSCAN21Q9Y5A6 473 aaPredicted RBP27.02■■□□□ 1.92
LDB1-201ENST00000361198 LTBP4Q8N2S1 1624 aa27.02■■□□□ 1.92
LDB1-201ENST00000361198 GOLIM4O00461 696 aa27.02■■□□□ 1.92
LDB1-201ENST00000361198 PSMA5P28066 241 aa27.02■■□□□ 1.92
LDB1-201ENST00000361198 NLRP10Q86W26 655 aa27.02■■□□□ 1.92
LDB1-201ENST00000361198 PAG1Q9NWQ8 432 aa27.02■■□□□ 1.92
LDB1-201ENST00000361198 CEP126Q9P2H0 1117 aa27.02■■□□□ 1.92
LDB1-201ENST00000361198 MBD3O95983 291 aa27.01■■□□□ 1.91
LDB1-201ENST00000361198 USPL1Q5W0Q7 1092 aa27.01■■□□□ 1.91
LDB1-201ENST00000361198 RBSNQ9H1K0 784 aa27.01■■□□□ 1.91
LDB1-201ENST00000361198 SPATA31A1Q5TZJ5 1347 aa27.01■■□□□ 1.91
LDB1-201ENST00000361198 MCMDC2Q4G0Z9 681 aa27.01■■□□□ 1.91
LDB1-201ENST00000361198 TMEM63CQ9P1W3 806 aa27.01■■□□□ 1.91
LDB1-201ENST00000361198 DOT1LQ8TEK3 1739 aa27■■□□□ 1.91
LDB1-201ENST00000361198 WDR33Q9C0J8 1336 aaKnown RBP27■■□□□ 1.91
LDB1-201ENST00000361198 HMG20BQ9P0W2 317 aa27■■□□□ 1.91
LDB1-201ENST00000361198 CCDC83Q8IWF9 413 aa27■■□□□ 1.91
LDB1-201ENST00000361198 ZSCAN31Q96LW9 406 aaPredicted RBP27■■□□□ 1.91
LDB1-201ENST00000361198 RBM27Q9P2N5 1060 aaKnown RBP27■■□□□ 1.91
LDB1-201ENST00000361198 PALLDQ8WX93 1383 aa26.99■■□□□ 1.91
LDB1-201ENST00000361198 ME3Q16798 604 aa26.99■■□□□ 1.91
LDB1-201ENST00000361198 TSGA10IPQ3SY00 556 aa26.99■■□□□ 1.91
LDB1-201ENST00000361198 HSP90AB3PQ58FF7 597 aa26.99■■□□□ 1.91
LDB1-201ENST00000361198 CDCA7Q9BWT1 371 aaPredicted RBP26.99■■□□□ 1.91
LDB1-201ENST00000361198 FBXO3Q9UK99 471 aa26.99■■□□□ 1.91
LDB1-201ENST00000361198 CDHR2Q9BYE9 1310 aa26.99■■□□□ 1.91
LDB1-201ENST00000361198 IFIT5Q13325 482 aaKnown RBP26.99■■□□□ 1.91
LDB1-201ENST00000361198 DDB1Q16531 1140 aa26.99■■□□□ 1.91
LDB1-201ENST00000361198 BLOC1S2Q6QNY1 142 aa26.99■■□□□ 1.91
LDB1-201ENST00000361198 SH2B1Q9NRF2 756 aaPredicted RBP26.99■■□□□ 1.91
LDB1-201ENST00000361198 SMC3Q9UQE7 1217 aa26.99■■□□□ 1.91
LDB1-201ENST00000361198 IFIT1P09914 478 aaKnown RBP26.98■■□□□ 1.91
LDB1-201ENST00000361198 SLFNL1Q499Z3 407 aa26.98■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms