RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 ZNF853P0CG23 659 aa18.8■□□□□ 0.6
PRPF40A-201ENST00000354363 DPP8Q6V1X1 898 aaPredicted RBP18.8■□□□□ 0.6
PRPF40A-201ENST00000354363 MPNDQ8N594 471 aa18.8■□□□□ 0.6
PRPF40A-201ENST00000354363 HYPKQ9NX55 129 aa18.8■□□□□ 0.6
PRPF40A-201ENST00000354363 ATP5J2-PTCD1G3V325 749 aa18.79■□□□□ 0.6
PRPF40A-201ENST00000354363 APAF1O14727 1248 aa18.79■□□□□ 0.6
PRPF40A-201ENST00000354363 TNS4Q8IZW8 715 aa18.78■□□□□ 0.6
PRPF40A-201ENST00000354363 ZNRF3Q9ULT6 936 aa18.78■□□□□ 0.6
PRPF40A-201ENST00000354363 DUOX1Q9NRD9 1551 aa18.78■□□□□ 0.6
PRPF40A-201ENST00000354363 VEGFBP49765 207 aa18.78■□□□□ 0.6
PRPF40A-201ENST00000354363 CXCL9Q07325 125 aa18.78■□□□□ 0.6
PRPF40A-201ENST00000354363 KIAA2012Q0VF49 1180 aa18.78■□□□□ 0.6
PRPF40A-201ENST00000354363 USP50Q70EL3 339 aaPredicted RBP18.78■□□□□ 0.6
PRPF40A-201ENST00000354363 FAM89AQ96GI7 184 aa18.78■□□□□ 0.6
PRPF40A-201ENST00000354363 IFT57Q9NWB7 429 aa18.78■□□□□ 0.6
PRPF40A-201ENST00000354363 COL4A1P02462 1669 aa18.77■□□□□ 0.59
PRPF40A-201ENST00000354363 GNAI1P63096 354 aa18.76■□□□□ 0.59
PRPF40A-201ENST00000354363 SF3B3Q15393 1217 aaKnown RBP18.76■□□□□ 0.59
PRPF40A-201ENST00000354363 TMC4Q7Z404 712 aa18.76■□□□□ 0.59
PRPF40A-201ENST00000354363 GPRC5DQ9NZD1 345 aa18.76■□□□□ 0.59
PRPF40A-201ENST00000354363 RASSF10A6NK89 507 aa18.75■□□□□ 0.59
PRPF40A-201ENST00000354363 TRIM28Q13263 835 aaKnown RBP18.75■□□□□ 0.59
PRPF40A-201ENST00000354363 CALD1Q05682 793 aaKnown RBP18.74■□□□□ 0.59
PRPF40A-201ENST00000354363 FMR1Q06787 632 aaKnown RBP eCLIP18.74■□□□□ 0.593e-7■■■■□ 19.7
PRPF40A-201ENST00000354363 CIAPIN1Q6FI81 312 aa18.74■□□□□ 0.59
PRPF40A-201ENST00000354363 CELF1Q92879 486 aaKnown RBP18.74■□□□□ 0.59
PRPF40A-201ENST00000354363 ADARB2Q9NS39 739 aaKnown RBP18.74■□□□□ 0.59
PRPF40A-201ENST00000354363 ELL2O00472 640 aaPredicted RBP18.74■□□□□ 0.59
PRPF40A-201ENST00000354363 GMPSP49915 693 aaPredicted RBP18.74■□□□□ 0.59
PRPF40A-201ENST00000354363 DEFB115Q30KQ5 88 aa18.74■□□□□ 0.59
PRPF40A-201ENST00000354363 RTL5Q5HYW3 569 aaPredicted RBP18.74■□□□□ 0.59
PRPF40A-201ENST00000354363 PHAXQ9H814 394 aaKnown RBP18.74■□□□□ 0.59
PRPF40A-201ENST00000354363 IRS4O14654 1257 aaPredicted RBP18.73■□□□□ 0.59
PRPF40A-201ENST00000354363 FOXN1O15353 648 aa18.73■□□□□ 0.59
PRPF40A-201ENST00000354363 RAD17O75943 681 aa18.73■□□□□ 0.59
PRPF40A-201ENST00000354363 GOLGA2Q08379 1002 aa18.73■□□□□ 0.59
PRPF40A-201ENST00000354363 RIC3Q7Z5B4 369 aa18.73■□□□□ 0.59
PRPF40A-201ENST00000354363 POLR2AP24928 1970 aaKnown RBP18.72■□□□□ 0.59
PRPF40A-201ENST00000354363 YDJCA8MPS7 323 aa18.72■□□□□ 0.59
PRPF40A-201ENST00000354363 C8orf58Q8NAV2 365 aa18.72■□□□□ 0.59
PRPF40A-201ENST00000354363 ABT1Q9ULW3 272 aaKnown RBP18.72■□□□□ 0.59
PRPF40A-201ENST00000354363 TNIP1Q15025 636 aa18.71■□□□□ 0.59
PRPF40A-201ENST00000354363 CDHR2Q9BYE9 1310 aa18.71■□□□□ 0.59
PRPF40A-201ENST00000354363 TRAF5O00463 557 aa18.71■□□□□ 0.58
PRPF40A-201ENST00000354363 ZBTB38Q8NAP3 1195 aaPredicted RBP18.71■□□□□ 0.58
PRPF40A-201ENST00000354363 BCL2L13Q9BXK5 485 aa18.71■□□□□ 0.58
PRPF40A-201ENST00000354363 NSFL1CQ9UNZ2 370 aaKnown RBP18.71■□□□□ 0.58
PRPF40A-201ENST00000354363 WDR33Q9C0J8 1336 aaKnown RBP18.7■□□□□ 0.58
PRPF40A-201ENST00000354363 CAPN15O75808 1086 aa18.7■□□□□ 0.58
PRPF40A-201ENST00000354363 MYD88Q99836 296 aa18.7■□□□□ 0.58
PRPF40A-201ENST00000354363 WBP1LQ9NX94 342 aa18.7■□□□□ 0.58
PRPF40A-201ENST00000354363 MYH3P11055 1940 aa18.69■□□□□ 0.58
PRPF40A-201ENST00000354363 SCN9AQ15858 1988 aa18.69■□□□□ 0.58
PRPF40A-201ENST00000354363 THSD7BQ9C0I4 1608 aa18.69■□□□□ 0.58
PRPF40A-201ENST00000354363 GPSM2P81274 684 aa18.69■□□□□ 0.58
PRPF40A-201ENST00000354363 WASHC4Q2M389 1173 aa18.69■□□□□ 0.58
PRPF40A-201ENST00000354363 CST9Q5W186 159 aa18.69■□□□□ 0.58
PRPF40A-201ENST00000354363 AIDAQ96BJ3 306 aa18.69■□□□□ 0.58
PRPF40A-201ENST00000354363 POLLQ9UGP5 575 aa18.69■□□□□ 0.58
PRPF40A-201ENST00000354363 RPS8P62241 208 aaKnown RBP18.68■□□□□ 0.58
PRPF40A-201ENST00000354363 CCDC184Q52MB2 194 aa18.68■□□□□ 0.58
PRPF40A-201ENST00000354363 PGAP2Q9UHJ9 254 aa18.68■□□□□ 0.58
PRPF40A-201ENST00000354363 SHTN1A0MZ66 631 aa18.67■□□□□ 0.58
PRPF40A-201ENST00000354363 CTCFP49711 727 aaPredicted RBP18.67■□□□□ 0.58
PRPF40A-201ENST00000354363 HIRAP54198 1017 aaPredicted RBP18.67■□□□□ 0.58
PRPF40A-201ENST00000354363 CCDC191Q8NCU4 936 aa18.67■□□□□ 0.58
PRPF40A-201ENST00000354363 TRPM4Q8TD43 1214 aa18.67■□□□□ 0.58
PRPF40A-201ENST00000354363 DBNDD1Q9H9R9 158 aa18.67■□□□□ 0.58
PRPF40A-201ENST00000354363 PRDM10Q9NQV6 1147 aa18.67■□□□□ 0.58
PRPF40A-201ENST00000354363 CNOT7Q9UIV1 285 aaKnown RBP18.67■□□□□ 0.58
PRPF40A-201ENST00000354363 C6orf229H3BNL8 230 aa18.67■□□□□ 0.58
PRPF40A-201ENST00000354363 RIMBP2O15034 1052 aa18.67■□□□□ 0.58
PRPF40A-201ENST00000354363 PCCAP05165 728 aaPredicted RBP18.67■□□□□ 0.58
PRPF40A-201ENST00000354363 CCDC30Q5VVM6 783 aa18.67■□□□□ 0.58
PRPF40A-201ENST00000354363 TSPYL6Q8N831 410 aa18.67■□□□□ 0.58
PRPF40A-201ENST00000354363 GLIS2Q9BZE0 524 aaPredicted RBP18.67■□□□□ 0.58
PRPF40A-201ENST00000354363 SEC31BQ9NQW1 1179 aa18.67■□□□□ 0.58
PRPF40A-201ENST00000354363 PSMD14O00487 310 aa18.66■□□□□ 0.58
PRPF40A-201ENST00000354363 HSP90B1P14625 803 aaKnown RBP18.66■□□□□ 0.58
PRPF40A-201ENST00000354363 METTL22Q9BUU2 404 aaPredicted RBP18.66■□□□□ 0.58
PRPF40A-201ENST00000354363 TLL2Q9Y6L7 1015 aa18.66■□□□□ 0.58
PRPF40A-201ENST00000354363 CACNA1FO60840 1977 aa18.66■□□□□ 0.58
PRPF40A-201ENST00000354363 PSME4Q14997 1843 aa18.65■□□□□ 0.58
PRPF40A-201ENST00000354363 DDX58O95786 925 aaKnown RBP18.65■□□□□ 0.58
PRPF40A-201ENST00000354363 MICALL2Q8IY33 904 aa18.65■□□□□ 0.58
PRPF40A-201ENST00000354363 TBC1D16Q8TBP0 767 aa18.65■□□□□ 0.58
PRPF40A-201ENST00000354363 ZC3H15Q8WU90 426 aaKnown RBP18.65■□□□□ 0.58
PRPF40A-201ENST00000354363 JARID2Q92833 1246 aaPredicted RBP18.65■□□□□ 0.58
PRPF40A-201ENST00000354363 CAPNS2Q96L46 248 aa18.65■□□□□ 0.58
PRPF40A-201ENST00000354363 EYA3Q99504 573 aa18.65■□□□□ 0.58
PRPF40A-201ENST00000354363 CHMP4AQ9BY43 222 aa18.65■□□□□ 0.58
PRPF40A-201ENST00000354363 CWC25Q9NXE8 425 aaPredicted RBP18.65■□□□□ 0.58
PRPF40A-201ENST00000354363 ZBTB12Q9Y330 459 aaPredicted RBP18.65■□□□□ 0.58
PRPF40A-201ENST00000354363 SPEF2Q9C093 1822 aa18.65■□□□□ 0.58
PRPF40A-201ENST00000354363 H7C1D1 291 aa18.64■□□□□ 0.57
PRPF40A-201ENST00000354363 ECE2O60344 883 aa18.64■□□□□ 0.57
PRPF40A-201ENST00000354363 PDE8AO60658 829 aa18.64■□□□□ 0.57
PRPF40A-201ENST00000354363 ECE1P42892 770 aa18.64■□□□□ 0.57
PRPF40A-201ENST00000354363 MAP2K1Q02750 393 aaPredicted RBP18.64■□□□□ 0.57
PRPF40A-201ENST00000354363 PAXIP1Q6ZW49 1069 aaPredicted RBP18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms