RNA–Protein interactions for RNA: ENST00000345851.7

TRIM3-201, Transcript of tripartite motif containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM3, Length 2,879 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-201ENST00000345851 PXDNQ92626 1479 aa25.25■■□□□ 1.63
TRIM3-201ENST00000345851 NR1I2O75469 434 aa25.24■■□□□ 1.63
TRIM3-201ENST00000345851 PTPN14Q15678 1187 aa25.24■■□□□ 1.63
TRIM3-201ENST00000345851 ARHGAP30Q7Z6I6 1101 aaPredicted RBP25.24■■□□□ 1.63
TRIM3-201ENST00000345851 BICD2Q8TD16 824 aa25.24■■□□□ 1.63
TRIM3-201ENST00000345851 TCEANC2Q96MN5 208 aa25.24■■□□□ 1.63
TRIM3-201ENST00000345851 SH2B1Q9NRF2 756 aaPredicted RBP25.24■■□□□ 1.63
TRIM3-201ENST00000345851 NAP1L2Q9ULW6 460 aaPredicted RBP25.24■■□□□ 1.63
TRIM3-201ENST00000345851 TEFQ10587 303 aa25.24■■□□□ 1.63
TRIM3-201ENST00000345851 COL9A3Q14050 684 aaPredicted RBP25.24■■□□□ 1.63
TRIM3-201ENST00000345851 PLEKHO1Q53GL0 409 aaPredicted RBP25.24■■□□□ 1.63
TRIM3-201ENST00000345851 ZSCAN31Q96LW9 406 aaPredicted RBP25.24■■□□□ 1.63
TRIM3-201ENST00000345851 TPCN1Q9ULQ1 816 aa25.24■■□□□ 1.63
TRIM3-201ENST00000345851 MED1Q15648 1581 aaPredicted RBP25.24■■□□□ 1.63
TRIM3-201ENST00000345851 ERBB3P21860 1342 aa25.24■■□□□ 1.63
TRIM3-201ENST00000345851 SLIT3O75094 1523 aa25.23■■□□□ 1.63
TRIM3-201ENST00000345851 RBM6P78332 1123 aaKnown RBP25.23■■□□□ 1.63
TRIM3-201ENST00000345851 BRINP3Q76B58 766 aa25.23■■□□□ 1.63
TRIM3-201ENST00000345851 LRRC8AQ8IWT6 810 aa25.23■■□□□ 1.63
TRIM3-201ENST00000345851 PHAXQ9H814 394 aaKnown RBP25.23■■□□□ 1.63
TRIM3-201ENST00000345851 NPHP3Q7Z494 1330 aa25.23■■□□□ 1.63
TRIM3-201ENST00000345851 C1orf141Q5JVX7 400 aa25.22■■□□□ 1.63
TRIM3-201ENST00000345851 LMTK3Q96Q04 1460 aa25.22■■□□□ 1.63
TRIM3-201ENST00000345851 FILIP1Q7Z7B0 1213 aa25.22■■□□□ 1.63
TRIM3-201ENST00000345851 TIGD1Q96MW7 591 aa25.22■■□□□ 1.63
TRIM3-201ENST00000345851 TRERF1Q96PN7 1200 aa25.22■■□□□ 1.63
TRIM3-201ENST00000345851 CLSTN2Q9H4D0 955 aa25.22■■□□□ 1.63
TRIM3-201ENST00000345851 HDGFL1Q5TGJ6 251 aa25.21■■□□□ 1.63
TRIM3-201ENST00000345851 SSH3Q8TE77 659 aa25.21■■□□□ 1.63
TRIM3-201ENST00000345851 DDX19AQ9NUU7 478 aaKnown RBP25.21■■□□□ 1.63
TRIM3-201ENST00000345851 BTBD11A6QL63 1104 aa25.21■■□□□ 1.63
TRIM3-201ENST00000345851 SKILP12757 684 aa25.21■■□□□ 1.63
TRIM3-201ENST00000345851 ELP1O95163 1332 aa25.2■■□□□ 1.63
TRIM3-201ENST00000345851 SRGAP3O43295 1099 aa25.2■■□□□ 1.63
TRIM3-201ENST00000345851 CCDC30Q5VVM6 783 aa25.2■■□□□ 1.63
TRIM3-201ENST00000345851 ZSWIM6Q9HCJ5 1215 aa25.2■■□□□ 1.63
TRIM3-201ENST00000345851 PRAMEF22A3QJZ6 481 aa25.2■■□□□ 1.62
TRIM3-201ENST00000345851 AKAP4Q5JQC9 854 aa25.2■■□□□ 1.62
TRIM3-201ENST00000345851 LEO1Q8WVC0 666 aaPredicted RBP25.2■■□□□ 1.62
TRIM3-201ENST00000345851 USP16Q9Y5T5 823 aa25.2■■□□□ 1.62
TRIM3-201ENST00000345851 GOLGA6L19H0YKK7 550 aa25.19■■□□□ 1.62
TRIM3-201ENST00000345851 RAB11FIP3O75154 756 aa25.19■■□□□ 1.62
TRIM3-201ENST00000345851 CCDC171Q6TFL3 1326 aa25.19■■□□□ 1.62
TRIM3-201ENST00000345851 SCAND2PQ9GZW5 306 aaPredicted RBP25.19■■□□□ 1.62
TRIM3-201ENST00000345851 CEMIPQ8WUJ3 1361 aa25.18■■□□□ 1.62
TRIM3-201ENST00000345851 STK3Q13188 491 aa25.18■■□□□ 1.62
TRIM3-201ENST00000345851 LARP1Q6PKG0 1096 aaKnown RBP25.18■■□□□ 1.62
TRIM3-201ENST00000345851 A0A087WWV3 80 aa25.18■■□□□ 1.62
TRIM3-201ENST00000345851 RNMTO43148 476 aaKnown RBP25.18■■□□□ 1.62
TRIM3-201ENST00000345851 KIF1AQ12756 1690 aa25.18■■□□□ 1.62
TRIM3-201ENST00000345851 EIF4A1P60842 406 aaKnown RBP25.17■■□□□ 1.62
TRIM3-201ENST00000345851 KIF1BPQ96EK5 621 aa25.17■■□□□ 1.62
TRIM3-201ENST00000345851 PGBD1Q96JS3 809 aa25.17■■□□□ 1.62
TRIM3-201ENST00000345851 NYAP1Q6ZVC0 841 aa25.17■■□□□ 1.62
TRIM3-201ENST00000345851 SYTL4Q96C24 671 aaPredicted RBP25.17■■□□□ 1.62
TRIM3-201ENST00000345851 OS9Q13438 667 aaPredicted RBP25.16■■□□□ 1.62
TRIM3-201ENST00000345851 C11orf57Q6ZUT1 292 aaPredicted RBP25.16■■□□□ 1.62
TRIM3-201ENST00000345851 GTF3C6Q969F1 213 aa25.16■■□□□ 1.62
TRIM3-201ENST00000345851 ERO1AQ96HE7 468 aa25.16■■□□□ 1.62
TRIM3-201ENST00000345851 ZNF446Q9NWS9 450 aa25.16■■□□□ 1.62
TRIM3-201ENST00000345851 STRCQ7RTU9 1775 aa25.16■■□□□ 1.62
TRIM3-201ENST00000345851 ALS2Q96Q42 1657 aa25.16■■□□□ 1.62
TRIM3-201ENST00000345851 CCDC69A6NI79 296 aa25.16■■□□□ 1.62
TRIM3-201ENST00000345851 SLAIN2Q9P270 581 aa25.16■■□□□ 1.62
TRIM3-201ENST00000345851 LRRC37A3O60309 1634 aa25.16■■□□□ 1.62
TRIM3-201ENST00000345851 SPATA31A3Q5VYP0 1347 aa25.16■■□□□ 1.62
TRIM3-201ENST00000345851 ZKSCAN1P17029 563 aaPredicted RBP25.15■■□□□ 1.62
TRIM3-201ENST00000345851 RBM43Q6ZSC3 357 aaKnown RBP25.15■■□□□ 1.62
TRIM3-201ENST00000345851 RAPGEF4Q8WZA2 1011 aa25.15■■□□□ 1.62
TRIM3-201ENST00000345851 RUFY2Q8WXA3 655 aa25.15■■□□□ 1.62
TRIM3-201ENST00000345851 CHPF2Q9P2E5 772 aa25.15■■□□□ 1.62
TRIM3-201ENST00000345851 CEBPZQ03701 1054 aaKnown RBP25.15■■□□□ 1.62
TRIM3-201ENST00000345851 SLC39A6Q13433 755 aa25.15■■□□□ 1.62
TRIM3-201ENST00000345851 AMOTQ4VCS5 1084 aa25.15■■□□□ 1.62
TRIM3-201ENST00000345851 SLU7O95391 586 aaKnown RBP25.14■■□□□ 1.62
TRIM3-201ENST00000345851 PDCP20941 246 aa25.14■■□□□ 1.62
TRIM3-201ENST00000345851 PLCD3Q8N3E9 789 aa25.14■■□□□ 1.62
TRIM3-201ENST00000345851 RBM8AQ9Y5S9 174 aaKnown RBP25.14■■□□□ 1.62
TRIM3-201ENST00000345851 XIRP1Q702N8 1843 aaKnown RBP25.14■■□□□ 1.61
TRIM3-201ENST00000345851 FBXW7Q969H0 707 aa25.13■■□□□ 1.61
TRIM3-201ENST00000345851 TM6SF1Q9BZW5 370 aa25.13■■□□□ 1.61
TRIM3-201ENST00000345851 ERCC6LQ2NKX8 1250 aa25.13■■□□□ 1.61
TRIM3-201ENST00000345851 FAM53CQ9NYF3 392 aa25.13■■□□□ 1.61
TRIM3-201ENST00000345851 TNS3Q68CZ2 1445 aa25.13■■□□□ 1.61
TRIM3-201ENST00000345851 CREB3L3Q68CJ9 461 aa25.12■■□□□ 1.61
TRIM3-201ENST00000345851 DDX11Q96FC9 970 aa25.12■■□□□ 1.61
TRIM3-201ENST00000345851 CALCOCO1Q9P1Z2 691 aa25.12■■□□□ 1.61
TRIM3-201ENST00000345851 DCCP43146 1447 aa25.12■■□□□ 1.61
TRIM3-201ENST00000345851 NBPF7P0C2Y1 421 aaPredicted RBP25.12■■□□□ 1.61
TRIM3-201ENST00000345851 CDC25BP30305 580 aa25.12■■□□□ 1.61
TRIM3-201ENST00000345851 IQCB1Q15051 598 aa25.12■■□□□ 1.61
TRIM3-201ENST00000345851 NOL10Q9BSC4 688 aaKnown RBP25.12■■□□□ 1.61
TRIM3-201ENST00000345851 CCZ1BP86790 482 aa25.11■■□□□ 1.61
TRIM3-201ENST00000345851 CCZ1P86791 482 aaPredicted RBP25.11■■□□□ 1.61
TRIM3-201ENST00000345851 NECTIN1Q15223 517 aa25.11■■□□□ 1.61
TRIM3-201ENST00000345851 CCAR2Q8N163 923 aaKnown RBP25.11■■□□□ 1.61
TRIM3-201ENST00000345851 BECN2A8MW95 431 aa25.11■■□□□ 1.61
TRIM3-201ENST00000345851 GLRX3O76003 335 aaKnown RBP25.11■■□□□ 1.61
TRIM3-201ENST00000345851 POLA2Q14181 598 aa25.11■■□□□ 1.61
TRIM3-201ENST00000345851 LRRN4CLQ8ND94 238 aa25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms