RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 ALDH1L1O75891 902 aa17.03■□□□□ 0.32
CPSF7-201ENST00000340437 GCP02774 474 aa17.03■□□□□ 0.32
CPSF7-201ENST00000340437 RPS6KB1P23443 525 aa17.03■□□□□ 0.32
CPSF7-201ENST00000340437 RAB11FIP4Q86YS3 637 aa17.03■□□□□ 0.32
CPSF7-201ENST00000340437 BABAM1Q9NWV8 329 aa17.03■□□□□ 0.32
CPSF7-201ENST00000340437 HMGN5P82970 282 aaKnown RBP17.03■□□□□ 0.32
CPSF7-201ENST00000340437 CHMP4AQ9BY43 222 aa17.03■□□□□ 0.32
CPSF7-201ENST00000340437 ZNF165P49910 485 aa17.02■□□□□ 0.32
CPSF7-201ENST00000340437 LEO1Q8WVC0 666 aaPredicted RBP17.02■□□□□ 0.32
CPSF7-201ENST00000340437 TOB2Q14106 344 aaPredicted RBP17.02■□□□□ 0.32
CPSF7-201ENST00000340437 HDAC5Q9UQL6 1122 aa17.02■□□□□ 0.32
CPSF7-201ENST00000340437 AXIN2Q9Y2T1 843 aa17.02■□□□□ 0.32
CPSF7-201ENST00000340437 HIP1O00291 1037 aa17.02■□□□□ 0.31
CPSF7-201ENST00000340437 IGKV5-2P06315 115 aa17.02■□□□□ 0.31
CPSF7-201ENST00000340437 DDX17Q92841 729 aaKnown RBP17.02■□□□□ 0.31
CPSF7-201ENST00000340437 CCDC85AQ96PX6 553 aaPredicted RBP17.02■□□□□ 0.31
CPSF7-201ENST00000340437 NEK1Q96PY6 1258 aa17.02■□□□□ 0.31
CPSF7-201ENST00000340437 DBNDD2Q9BQY9 259 aa17.02■□□□□ 0.31
CPSF7-201ENST00000340437 FUCA2Q9BTY2 467 aa17.02■□□□□ 0.31
CPSF7-201ENST00000340437 BCL2L12Q9HB09 334 aa17.02■□□□□ 0.31
CPSF7-201ENST00000340437 FILIP1Q7Z7B0 1213 aa17.01■□□□□ 0.31
CPSF7-201ENST00000340437 TM6SF1Q9BZW5 370 aa17.01■□□□□ 0.31
CPSF7-201ENST00000340437 GOLGA6L19H0YKK7 550 aa17.01■□□□□ 0.31
CPSF7-201ENST00000340437 NCOA5Q9HCD5 579 aaKnown RBP17.01■□□□□ 0.31
CPSF7-201ENST00000340437 RGPD8O14715 1765 aaPredicted RBP17.01■□□□□ 0.31
CPSF7-201ENST00000340437 ZNF710Q8N1W2 664 aa17.01■□□□□ 0.31
CPSF7-201ENST00000340437 KIAA1524Q8TCG1 905 aa17.01■□□□□ 0.31
CPSF7-201ENST00000340437 SCAND2PQ9GZW5 306 aaPredicted RBP17.01■□□□□ 0.31
CPSF7-201ENST00000340437 NPHP1O15259 732 aa17■□□□□ 0.31
CPSF7-201ENST00000340437 EPB41L2O43491 1005 aaKnown RBP17■□□□□ 0.31
CPSF7-201ENST00000340437 ANKRD1Q15327 319 aa17■□□□□ 0.31
CPSF7-201ENST00000340437 PRIMPOLQ96LW4 560 aa17■□□□□ 0.31
CPSF7-201ENST00000340437 TPD52L1Q16890 204 aaPredicted RBP17■□□□□ 0.31
CPSF7-201ENST00000340437 RAPGEF4Q8WZA2 1011 aa17■□□□□ 0.31
CPSF7-201ENST00000340437 USP16Q9Y5T5 823 aa17■□□□□ 0.31
CPSF7-201ENST00000340437 FMNL2Q96PY5 1086 aa17■□□□□ 0.31
CPSF7-201ENST00000340437 DIP2BQ9P265 1576 aa16.99■□□□□ 0.31
CPSF7-201ENST00000340437 BECN2A8MW95 431 aa16.99■□□□□ 0.31
CPSF7-201ENST00000340437 GOLIM4O00461 696 aa16.99■□□□□ 0.31
CPSF7-201ENST00000340437 APOBRQ0VD83 1088 aa16.99■□□□□ 0.31
CPSF7-201ENST00000340437 AMOTQ4VCS5 1084 aa16.99■□□□□ 0.31
CPSF7-201ENST00000340437 CLIP2Q9UDT6 1046 aa16.99■□□□□ 0.31
CPSF7-201ENST00000340437 DBNLQ9UJU6 430 aaKnown RBP16.99■□□□□ 0.31
CPSF7-201ENST00000340437 A0A087WZG4 1122 aa16.99■□□□□ 0.31
CPSF7-201ENST00000340437 NAA30Q147X3 362 aaPredicted RBP16.99■□□□□ 0.31
CPSF7-201ENST00000340437 DDX21Q9NR30 783 aaKnown RBP eCLIP16.99■□□□□ 0.31
CPSF7-201ENST00000340437 TAF5LO75529 589 aa16.99■□□□□ 0.31
CPSF7-201ENST00000340437 HOXB7P09629 217 aa16.99■□□□□ 0.31
CPSF7-201ENST00000340437 ARID5BQ14865 1188 aa16.99■□□□□ 0.31
CPSF7-201ENST00000340437 TTC5Q8N0Z6 440 aa16.99■□□□□ 0.31
CPSF7-201ENST00000340437 PDCL2Q8N4E4 241 aa16.99■□□□□ 0.31
CPSF7-201ENST00000340437 KCNH5Q8NCM2 988 aa16.99■□□□□ 0.31
CPSF7-201ENST00000340437 CABLES1Q8TDN4 633 aa16.99■□□□□ 0.31
CPSF7-201ENST00000340437 CEMIPQ8WUJ3 1361 aa16.99■□□□□ 0.31
CPSF7-201ENST00000340437 PGBD1Q96JS3 809 aa16.99■□□□□ 0.31
CPSF7-201ENST00000340437 TRMT1Q9NXH9 659 aaKnown RBP16.99■□□□□ 0.31
CPSF7-201ENST00000340437 TIMM10P62072 90 aa16.98■□□□□ 0.31
CPSF7-201ENST00000340437 A0A0G2JLW4 131 aa16.98■□□□□ 0.31
CPSF7-201ENST00000340437 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.98■□□□□ 0.31
CPSF7-201ENST00000340437 V9GYY5 206 aaPredicted RBP16.98■□□□□ 0.31
CPSF7-201ENST00000340437 U2AF2P26368 475 aaKnown RBP eCLIP16.98■□□□□ 0.311e-6■■■□□ 18.8
CPSF7-201ENST00000340437 MTX1Q13505 466 aa16.98■□□□□ 0.31
CPSF7-201ENST00000340437 OTUD7BQ6GQQ9 843 aa16.98■□□□□ 0.31
CPSF7-201ENST00000340437 ANKRD13DQ6ZTN6 518 aa16.98■□□□□ 0.31
CPSF7-201ENST00000340437 MTERF4Q7Z6M4 381 aaKnown RBP16.98■□□□□ 0.31
CPSF7-201ENST00000340437 KAT6BQ8WYB5 2073 aa16.98■□□□□ 0.31
CPSF7-201ENST00000340437 RGPD1P0DJD0 1748 aa16.97■□□□□ 0.31
CPSF7-201ENST00000340437 NEURL1BA8MQ27 555 aa16.97■□□□□ 0.31
CPSF7-201ENST00000340437 ME1P48163 572 aa16.97■□□□□ 0.31
CPSF7-201ENST00000340437 GCKRQ14397 625 aa16.97■□□□□ 0.31
CPSF7-201ENST00000340437 ZNF496Q96IT1 587 aaPredicted RBP16.97■□□□□ 0.31
CPSF7-201ENST00000340437 CCDC94Q9BW85 323 aaPredicted RBP16.97■□□□□ 0.31
CPSF7-201ENST00000340437 SNRKQ9NRH2 765 aa16.97■□□□□ 0.31
CPSF7-201ENST00000340437 DIP2AQ14689 1571 aa16.97■□□□□ 0.31
CPSF7-201ENST00000340437 HSP90AB3PQ58FF7 597 aa16.97■□□□□ 0.31
CPSF7-201ENST00000340437 IL17RAQ96F46 866 aa16.97■□□□□ 0.31
CPSF7-201ENST00000340437 TNNT1P13805 278 aa16.97■□□□□ 0.31
CPSF7-201ENST00000340437 ZNF790Q6PG37 636 aa16.97■□□□□ 0.31
CPSF7-201ENST00000340437 CYP21A2P08686 494 aa16.96■□□□□ 0.31
CPSF7-201ENST00000340437 HAND2P61296 217 aa16.96■□□□□ 0.31
CPSF7-201ENST00000340437 CHRNA2Q15822 529 aa16.96■□□□□ 0.31
CPSF7-201ENST00000340437 CCAR1Q8IX12 1150 aaKnown RBP16.96■□□□□ 0.31
CPSF7-201ENST00000340437 SYTL4Q96C24 671 aaPredicted RBP16.96■□□□□ 0.31
CPSF7-201ENST00000340437 XRN1Q8IZH2 1706 aaKnown RBP16.96■□□□□ 0.31
CPSF7-201ENST00000340437 LMBR1LQ6UX01 489 aa16.96■□□□□ 0.31
CPSF7-201ENST00000340437 NPHP3Q7Z494 1330 aa16.96■□□□□ 0.3
CPSF7-201ENST00000340437 USP42Q9H9J4 1324 aaKnown RBP16.96■□□□□ 0.3
CPSF7-201ENST00000340437 ATP2B3Q16720 1220 aa16.95■□□□□ 0.3
CPSF7-201ENST00000340437 TNNI3KQ59H18 835 aa16.95■□□□□ 0.3
CPSF7-201ENST00000340437 ISM2Q6H9L7 571 aa16.95■□□□□ 0.3
CPSF7-201ENST00000340437 FPGT-TNNI3KV9GXZ4 949 aa16.95■□□□□ 0.3
CPSF7-201ENST00000340437 DDX19AQ9NUU7 478 aaKnown RBP16.95■□□□□ 0.3
CPSF7-201ENST00000340437 FKBP4Q02790 459 aaKnown RBP eCLIP16.94■□□□□ 0.3
CPSF7-201ENST00000340437 SCRN1Q12765 414 aa16.94■□□□□ 0.3
CPSF7-201ENST00000340437 ZNF594Q96JF6 807 aaPredicted RBP16.94■□□□□ 0.3
CPSF7-201ENST00000340437 CLSTN2Q9H4D0 955 aa16.94■□□□□ 0.3
CPSF7-201ENST00000340437 ZNF75DP51815 510 aa16.94■□□□□ 0.3
CPSF7-201ENST00000340437 BIN1O00499 593 aa16.94■□□□□ 0.3
CPSF7-201ENST00000340437 POLR3DP05423 398 aaPredicted RBP16.94■□□□□ 0.3
CPSF7-201ENST00000340437 SF3A1Q15459 793 aaKnown RBP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms