RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 VPS53Q5VIR6 699 aa14.05□□□□□ -0.16
USP1-201ENST00000339950 INO80Q9ULG1 1556 aaPredicted RBP14.05□□□□□ -0.16
USP1-201ENST00000339950 NEXMIFQ5QGS0 1516 aa14.05□□□□□ -0.16
USP1-201ENST00000339950 SHPRHQ149N8 1683 aa14.05□□□□□ -0.16
USP1-201ENST00000339950 PI16Q6UXB8 463 aa14.05□□□□□ -0.16
USP1-201ENST00000339950 TTLL7Q6ZT98 887 aa14.05□□□□□ -0.16
USP1-201ENST00000339950 MICU3Q86XE3 530 aa14.05□□□□□ -0.16
USP1-201ENST00000339950 CLIP2Q9UDT6 1046 aa14.05□□□□□ -0.16
USP1-201ENST00000339950 MYO3AQ8NEV4 1616 aa14.04□□□□□ -0.16
USP1-201ENST00000339950 BICDL1Q6ZP65 573 aa14.04□□□□□ -0.16
USP1-201ENST00000339950 MAP7D2Q96T17 732 aa14.04□□□□□ -0.16
USP1-201ENST00000339950 A0A1B0GVL5 298 aa14.04□□□□□ -0.16
USP1-201ENST00000339950 AMOTQ4VCS5 1084 aa14.04□□□□□ -0.16
USP1-201ENST00000339950 CCAR1Q8IX12 1150 aaKnown RBP14.04□□□□□ -0.16
USP1-201ENST00000339950 TBX22Q9Y458 520 aa14.04□□□□□ -0.16
USP1-201ENST00000339950 KIF3AQ9Y496 699 aa14.04□□□□□ -0.16
USP1-201ENST00000339950 INTS4Q96HW7 963 aaKnown RBP14.03□□□□□ -0.16
USP1-201ENST00000339950 PYCARDQ9ULZ3 195 aa14.03□□□□□ -0.16
USP1-201ENST00000339950 AATKQ6ZMQ8 1374 aa14.03□□□□□ -0.16
USP1-201ENST00000339950 NR1I2O75469 434 aa14.03□□□□□ -0.16
USP1-201ENST00000339950 SH2B1Q9NRF2 756 aaPredicted RBP14.03□□□□□ -0.16
USP1-201ENST00000339950 SETBP1Q9Y6X0 1596 aa14.03□□□□□ -0.16
USP1-201ENST00000339950 A0A0G2JLW4 131 aa14.03□□□□□ -0.16
USP1-201ENST00000339950 METTL24Q5JXM2 366 aa14.03□□□□□ -0.16
USP1-201ENST00000339950 PPP4R3BQ5MIZ7 849 aa14.03□□□□□ -0.16
USP1-201ENST00000339950 MYL10Q9BUA6 226 aa14.03□□□□□ -0.16
USP1-201ENST00000339950 ABCF2Q9UG63 623 aa14.03□□□□□ -0.16
USP1-201ENST00000339950 SNAP23O00161 211 aa14.02□□□□□ -0.16
USP1-201ENST00000339950 PUS3Q9BZE2 481 aaKnown RBP14.02□□□□□ -0.16
USP1-201ENST00000339950 OSBPL3Q9H4L5 887 aa14.02□□□□□ -0.16
USP1-201ENST00000339950 GOLGA8BA8MQT2 603 aa14.02□□□□□ -0.17
USP1-201ENST00000339950 HIP1O00291 1037 aa14.02□□□□□ -0.17
USP1-201ENST00000339950 LRRC24Q50LG9 513 aa14.02□□□□□ -0.17
USP1-201ENST00000339950 SPECC1Q5M775 1068 aa14.02□□□□□ -0.17
USP1-201ENST00000339950 RASSF8Q8NHQ8 419 aa14.02□□□□□ -0.17
USP1-201ENST00000339950 DDX21Q9NR30 783 aaKnown RBP eCLIP14.02□□□□□ -0.17
USP1-201ENST00000339950 CCDC158Q5M9N0 1113 aa14.02□□□□□ -0.17
USP1-201ENST00000339950 DBNLQ9UJU6 430 aaKnown RBP14.02□□□□□ -0.17
USP1-201ENST00000339950 NCOA3Q9Y6Q9 1424 aa14.02□□□□□ -0.17
USP1-201ENST00000339950 COL3A1P02461 1466 aaPredicted RBP14.02□□□□□ -0.17
USP1-201ENST00000339950 CYP2E1P05181 493 aaPredicted RBP14.01□□□□□ -0.17
USP1-201ENST00000339950 TNNT1P13805 278 aa14.01□□□□□ -0.17
USP1-201ENST00000339950 TBC1D2BQ9UPU7 963 aa14.01□□□□□ -0.17
USP1-201ENST00000339950 JAG2Q9Y219 1238 aa14.01□□□□□ -0.17
USP1-201ENST00000339950 GCKRQ14397 625 aa14.01□□□□□ -0.17
USP1-201ENST00000339950 SYNE4Q8N205 404 aa14.01□□□□□ -0.17
USP1-201ENST00000339950 ZKSCAN3Q9BRR0 538 aa14.01□□□□□ -0.17
USP1-201ENST00000339950 MROH1Q8NDA8 1641 aa14.01□□□□□ -0.17
USP1-201ENST00000339950 ANKRD1Q15327 319 aa14.01□□□□□ -0.17
USP1-201ENST00000339950 ERICH4A6NGS2 130 aa14□□□□□ -0.17
USP1-201ENST00000339950 SNRPA1P09661 255 aaKnown RBP14□□□□□ -0.17
USP1-201ENST00000339950 ARID5BQ14865 1188 aa14□□□□□ -0.17
USP1-201ENST00000339950 IFNL2Q8IZJ0 200 aa14□□□□□ -0.17
USP1-201ENST00000339950 MED14O60244 1454 aa14□□□□□ -0.17
USP1-201ENST00000339950 KLF18A0A0U1RQI7 1052 aa14□□□□□ -0.17
USP1-201ENST00000339950 CUL4AQ13619 759 aa14□□□□□ -0.17
USP1-201ENST00000339950 NAA30Q147X3 362 aaPredicted RBP14□□□□□ -0.17
USP1-201ENST00000339950 SKIDA1Q1XH10 827 aa14□□□□□ -0.17
USP1-201ENST00000339950 PTPDC1A2A3K4 754 aa14□□□□□ -0.17
USP1-201ENST00000339950 SCAND2PQ9GZW5 306 aaPredicted RBP14□□□□□ -0.17
USP1-201ENST00000339950 STAP2Q9UGK3 403 aa14□□□□□ -0.17
USP1-201ENST00000339950 CDK12Q9NYV4 1490 aaPredicted RBP14□□□□□ -0.17
USP1-201ENST00000339950 VWDEQ8N2E2 1590 aa14□□□□□ -0.17
USP1-201ENST00000339950 MINDY4BA8MYZ0 360 aa13.99□□□□□ -0.17
USP1-201ENST00000339950 LMOD1P29536 600 aaPredicted RBP13.99□□□□□ -0.17
USP1-201ENST00000339950 TNNI3KQ59H18 835 aa13.99□□□□□ -0.17
USP1-201ENST00000339950 KLHL10Q6JEL2 608 aa13.99□□□□□ -0.17
USP1-201ENST00000339950 AOPEPQ8N6M6 819 aa13.99□□□□□ -0.17
USP1-201ENST00000339950 ORC3Q9UBD5 711 aaPredicted RBP13.99□□□□□ -0.17
USP1-201ENST00000339950 FPGT-TNNI3KV9GXZ4 949 aa13.99□□□□□ -0.17
USP1-201ENST00000339950 ATP7BP35670 1465 aa13.99□□□□□ -0.17
USP1-201ENST00000339950 NEO1Q92859 1461 aa13.99□□□□□ -0.17
USP1-201ENST00000339950 NRDCO43847 1150 aa13.99□□□□□ -0.17
USP1-201ENST00000339950 LETM1O95202 739 aaPredicted RBP13.99□□□□□ -0.17
USP1-201ENST00000339950 IGKV5-2P06315 115 aa13.99□□□□□ -0.17
USP1-201ENST00000339950 LDHAL6AQ6ZMR3 332 aa13.99□□□□□ -0.17
USP1-201ENST00000339950 CMTR1Q8N1G2 835 aaKnown RBP13.99□□□□□ -0.17
USP1-201ENST00000339950 C8orf76Q96K31 380 aa13.99□□□□□ -0.17
USP1-201ENST00000339950 CGNQ9P2M7 1197 aaKnown RBP13.99□□□□□ -0.17
USP1-201ENST00000339950 PIK3C2BO00750 1634 aa13.99□□□□□ -0.17
USP1-201ENST00000339950 NEURL1BA8MQ27 555 aa13.99□□□□□ -0.17
USP1-201ENST00000339950 RPS6KB1P23443 525 aa13.99□□□□□ -0.17
USP1-201ENST00000339950 PDCL2Q8N4E4 241 aa13.99□□□□□ -0.17
USP1-201ENST00000339950 CBX8Q9HC52 389 aa13.99□□□□□ -0.17
USP1-201ENST00000339950 CPSF1Q10570 1443 aaKnown RBP13.99□□□□□ -0.17
USP1-201ENST00000339950 KIAA1210Q9ULL0 1709 aa13.99□□□□□ -0.17
USP1-201ENST00000339950 ABCA9Q8IUA7 1624 aa13.99□□□□□ -0.17
USP1-201ENST00000339950 FRMPD1Q5SYB0 1578 aa13.99□□□□□ -0.17
USP1-201ENST00000339950 CRB1P82279 1406 aa13.99□□□□□ -0.17
USP1-201ENST00000339950 hCG_1642624A0A1W2PR95 340 aa13.98□□□□□ -0.17
USP1-201ENST00000339950 MCMDC2Q4G0Z9 681 aa13.98□□□□□ -0.17
USP1-201ENST00000339950 CCDC24Q8N4L8 307 aa13.98□□□□□ -0.17
USP1-201ENST00000339950 MAP2P11137 1827 aaKnown RBP13.98□□□□□ -0.17
USP1-201ENST00000339950 ARAP3Q8WWN8 1544 aa13.98□□□□□ -0.17
USP1-201ENST00000339950 ALDH1L1O75891 902 aa13.98□□□□□ -0.17
USP1-201ENST00000339950 SERPINC1P01008 464 aa13.98□□□□□ -0.17
USP1-201ENST00000339950 TRIM29Q14134 588 aa13.98□□□□□ -0.17
USP1-201ENST00000339950 CCDC112Q8NEF3 446 aa13.98□□□□□ -0.17
USP1-201ENST00000339950 LEO1Q8WVC0 666 aaPredicted RBP13.98□□□□□ -0.17
USP1-201ENST00000339950 ZSWIM4Q9H7M6 989 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms