RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 RUFY4Q6ZNE9 571 aa6.28□□□□□ -1.4
PTPRB-202ENST00000334414 RBM27Q9P2N5 1060 aaKnown RBP6.28□□□□□ -1.4
PTPRB-202ENST00000334414 RBBP5Q15291 538 aaKnown RBP6.28□□□□□ -1.4
PTPRB-202ENST00000334414 CSRNP2Q9H175 543 aa6.28□□□□□ -1.4
PTPRB-202ENST00000334414 GABPB2Q8TAK5 448 aaPredicted RBP6.28□□□□□ -1.4
PTPRB-202ENST00000334414 NEDD9Q14511 834 aa6.28□□□□□ -1.4
PTPRB-202ENST00000334414 ANKRD36BQ8N2N9 1353 aa6.28□□□□□ -1.4
PTPRB-202ENST00000334414 NUP160Q12769 1436 aa6.28□□□□□ -1.4
PTPRB-202ENST00000334414 PCF11O94913 1555 aaKnown RBP6.28□□□□□ -1.4
PTPRB-202ENST00000334414 RTL1A6NKG5 1358 aa6.28□□□□□ -1.4
PTPRB-202ENST00000334414 PRC1O43663 620 aa6.28□□□□□ -1.4
PTPRB-202ENST00000334414 GMNNO75496 209 aa6.28□□□□□ -1.4
PTPRB-202ENST00000334414 EPRSP07814 1512 aaKnown RBP6.28□□□□□ -1.4
PTPRB-202ENST00000334414 HDAC1Q13547 482 aaPredicted RBP6.28□□□□□ -1.4
PTPRB-202ENST00000334414 RPUSD2Q8IZ73 545 aaKnown RBP6.28□□□□□ -1.4
PTPRB-202ENST00000334414 SSX2IPQ9Y2D8 614 aa6.28□□□□□ -1.4
PTPRB-202ENST00000334414 STK3Q13188 491 aa6.28□□□□□ -1.4
PTPRB-202ENST00000334414 SENP3Q9H4L4 574 aaPredicted RBP6.28□□□□□ -1.4
PTPRB-202ENST00000334414 EXOC1Q9NV70 894 aa6.28□□□□□ -1.4
PTPRB-202ENST00000334414 ACTN4O43707 911 aaKnown RBP6.28□□□□□ -1.4
PTPRB-202ENST00000334414 DNAJC8O75937 253 aaPredicted RBP6.28□□□□□ -1.4
PTPRB-202ENST00000334414 AIDAQ96BJ3 306 aa6.28□□□□□ -1.4
PTPRB-202ENST00000334414 SPDYE4A6NLX3 237 aa6.28□□□□□ -1.4
PTPRB-202ENST00000334414 XRCC6P12956 609 aaKnown RBP eCLIP6.28□□□□□ -1.4
PTPRB-202ENST00000334414 SYT1P21579 422 aa6.28□□□□□ -1.4
PTPRB-202ENST00000334414 MSANTD4Q8NCY6 345 aa6.28□□□□□ -1.4
PTPRB-202ENST00000334414 HVCN1Q96D96 273 aa6.28□□□□□ -1.4
PTPRB-202ENST00000334414 TCP11L1Q9NUJ3 509 aa6.28□□□□□ -1.4
PTPRB-202ENST00000334414 EXOSC9Q06265 439 aaKnown RBP6.27□□□□□ -1.41
PTPRB-202ENST00000334414 SLMAPQ14BN4 828 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 GJB2P29033 226 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 SMC5Q8IY18 1101 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 RNF10Q8N5U6 811 aaKnown RBP6.27□□□□□ -1.41
PTPRB-202ENST00000334414 NKIRAS1Q9NYS0 192 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 SLC12A7Q9Y666 1083 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 PPP1R1BQ9UD71 204 aaPredicted RBP6.27□□□□□ -1.41
PTPRB-202ENST00000334414 PPFIA2O75334 1257 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 APBA1Q02410 837 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 CCDC26Q8TAB7 109 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 ARHGAP45Q92619 1136 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 ZMAT2Q96NC0 199 aaKnown RBP6.27□□□□□ -1.41
PTPRB-202ENST00000334414 ASXL1Q8IXJ9 1541 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 NESP48681 1621 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 MAPK8IP2Q13387 824 aaPredicted RBP6.27□□□□□ -1.41
PTPRB-202ENST00000334414 CFAP157Q5JU67 520 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 ARHGEF12Q9NZN5 1544 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 UBASH3AP57075 661 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 CWC27Q6UX04 472 aaKnown RBP6.27□□□□□ -1.41
PTPRB-202ENST00000334414 BRAPQ7Z569 592 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 DZIP1Q86YF9 867 aaKnown RBP6.27□□□□□ -1.41
PTPRB-202ENST00000334414 MED4Q9NPJ6 270 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 EVI5O60447 810 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 ERCC3P19447 782 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 CEP85LQ5SZL2 805 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 CCDC62Q6P9F0 684 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 GOLGA5Q8TBA6 731 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 MPHOSPH8Q99549 860 aa6.27□□□□□ -1.41
PTPRB-202ENST00000334414 DHX37Q8IY37 1157 aaKnown RBP6.26□□□□□ -1.41
PTPRB-202ENST00000334414 MRPS27Q92552 414 aaKnown RBP6.26□□□□□ -1.41
PTPRB-202ENST00000334414 CCDC194A0A1B0GVG4 234 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 MSH5O43196 834 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 VWA3BQ502W6 1294 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 IFT20Q8IY31 132 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 ERMNQ8TAM6 284 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 ATRIPQ8WXE1 791 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 EFCC1Q9HA90 598 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 PPP2R5EQ16537 467 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 FSIP1Q8NA03 581 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 GOLGA6CA6NDK9 693 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 GOLGA6DP0CG33 693 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 RLBP1P12271 317 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 PCK1P35558 622 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 DMTNQ08495 405 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 TRAF1Q13077 416 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 RAB3GAP1Q15042 981 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 EFCAB13Q8IY85 973 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 ZC3H15Q8WU90 426 aaKnown RBP6.26□□□□□ -1.41
PTPRB-202ENST00000334414 GOLGA6AQ9NYA3 693 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 MACROD2A1Z1Q3 448 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 SLC4A2P04920 1241 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 FERMT2Q96AC1 680 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 CNNM1Q9NRU3 951 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 PARP2Q9UGN5 583 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.26□□□□□ -1.41
PTPRB-202ENST00000334414 BRD3Q15059 726 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 ANO6Q4KMQ2 910 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 TTC22Q5TAA0 569 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 WDR78Q5VTH9 848 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 CUL5Q93034 780 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 GBP5Q96PP8 586 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 TSPYL2Q9H2G4 693 aaPredicted RBP6.26□□□□□ -1.41
PTPRB-202ENST00000334414 STK24Q9Y6E0 443 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 PRKAR2BP31323 418 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 ZNF76P36508 570 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 TPD52P55327 224 aaPredicted RBP6.26□□□□□ -1.41
PTPRB-202ENST00000334414 TMTC2Q8N394 836 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 HMGXB3Q12766 1538 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 GOLGA8KD6RF30 607 aa6.26□□□□□ -1.41
PTPRB-202ENST00000334414 GBP7Q8N8V2 638 aaPredicted RBP6.26□□□□□ -1.41
PTPRB-202ENST00000334414 SRGAP3O43295 1099 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms