RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 SAFBQ15424 915 aaKnown RBP eCLIP11.02□□□□□ -0.65
TMEM39A-201ENST00000319172 EAF2Q96CJ1 260 aaPredicted RBP11.01□□□□□ -0.65
TMEM39A-201ENST00000319172 KDM4FA0A1W2PPD8 638 aa11.01□□□□□ -0.65
TMEM39A-201ENST00000319172 ZNF213O14771 459 aa11.01□□□□□ -0.65
TMEM39A-201ENST00000319172 MARCH6O60337 910 aa11.01□□□□□ -0.65
TMEM39A-201ENST00000319172 RAB11FIP4Q86YS3 637 aa11.01□□□□□ -0.65
TMEM39A-201ENST00000319172 TNPO1Q92973 898 aaKnown RBP11.01□□□□□ -0.65
TMEM39A-201ENST00000319172 TMX3Q96JJ7 454 aa11.01□□□□□ -0.65
TMEM39A-201ENST00000319172 LOC102724428A0A0B4J2F2 783 aa11□□□□□ -0.65
TMEM39A-201ENST00000319172 CPA1P15085 419 aa11□□□□□ -0.65
TMEM39A-201ENST00000319172 SIK1P57059 783 aa11□□□□□ -0.65
TMEM39A-201ENST00000319172 SLC9C2Q5TAH2 1124 aa11□□□□□ -0.65
TMEM39A-201ENST00000319172 TPTE2Q6XPS3 522 aa11□□□□□ -0.65
TMEM39A-201ENST00000319172 GOLGA6L6A8MZA4 724 aa11□□□□□ -0.65
TMEM39A-201ENST00000319172 CCT2P78371 535 aaKnown RBP11□□□□□ -0.65
TMEM39A-201ENST00000319172 CCDC69A6NI79 296 aa11□□□□□ -0.65
TMEM39A-201ENST00000319172 SLC3A2P08195 630 aaKnown RBP11□□□□□ -0.65
TMEM39A-201ENST00000319172 RBM5P52756 815 aaKnown RBP eCLIP11□□□□□ -0.652e-6■■■■□ 22.4
TMEM39A-201ENST00000319172 DZIP1Q86YF9 867 aaKnown RBP11□□□□□ -0.65
TMEM39A-201ENST00000319172 CREBRFQ8IUR6 639 aa11□□□□□ -0.65
TMEM39A-201ENST00000319172 NECAB1Q8N987 351 aa11□□□□□ -0.65
TMEM39A-201ENST00000319172 UBAC1Q9BSL1 405 aa11□□□□□ -0.65
TMEM39A-201ENST00000319172 DCAF8L1A6NGE4 600 aa11□□□□□ -0.65
TMEM39A-201ENST00000319172 SLC4A8Q2Y0W8 1093 aa11□□□□□ -0.65
TMEM39A-201ENST00000319172 MCMDC2Q4G0Z9 681 aa11□□□□□ -0.65
TMEM39A-201ENST00000319172 CCDC82Q8N4S0 544 aa11□□□□□ -0.65
TMEM39A-201ENST00000319172 FAM227BQ96M60 508 aa11□□□□□ -0.65
TMEM39A-201ENST00000319172 ARHGAP23Q9P227 1491 aa10.99□□□□□ -0.65
TMEM39A-201ENST00000319172 ATP2B2Q01814 1243 aa10.99□□□□□ -0.65
TMEM39A-201ENST00000319172 NEK1Q96PY6 1258 aa10.99□□□□□ -0.65
TMEM39A-201ENST00000319172 TFCP2L1Q9NZI6 479 aa10.99□□□□□ -0.65
TMEM39A-201ENST00000319172 CRB1P82279 1406 aa10.99□□□□□ -0.65
TMEM39A-201ENST00000319172 TAF5LO75529 589 aa10.99□□□□□ -0.65
TMEM39A-201ENST00000319172 CCDC73Q6ZRK6 1079 aa10.99□□□□□ -0.65
TMEM39A-201ENST00000319172 CCDC129Q6ZRS4 1044 aa10.99□□□□□ -0.65
TMEM39A-201ENST00000319172 PIBF1Q8WXW3 757 aa10.99□□□□□ -0.65
TMEM39A-201ENST00000319172 CCDC34Q96HJ3 373 aa10.99□□□□□ -0.65
TMEM39A-201ENST00000319172 NAP1L5Q96NT1 182 aaPredicted RBP10.99□□□□□ -0.65
TMEM39A-201ENST00000319172 JAG2Q9Y219 1238 aa10.99□□□□□ -0.65
TMEM39A-201ENST00000319172 SLIT1O75093 1534 aa10.99□□□□□ -0.65
TMEM39A-201ENST00000319172 HEG1Q9ULI3 1381 aa10.99□□□□□ -0.65
TMEM39A-201ENST00000319172 UQCRFS1P1P0C7P4 283 aa10.98□□□□□ -0.65
TMEM39A-201ENST00000319172 GUCY1B3Q02153 619 aa10.98□□□□□ -0.65
TMEM39A-201ENST00000319172 TTF1Q15361 905 aaPredicted RBP10.98□□□□□ -0.65
TMEM39A-201ENST00000319172 GDPD2Q9HCC8 539 aa10.98□□□□□ -0.65
TMEM39A-201ENST00000319172 IQSEC2Q5JU85 1478 aa10.98□□□□□ -0.65
TMEM39A-201ENST00000319172 PDE8AO60658 829 aa10.98□□□□□ -0.65
TMEM39A-201ENST00000319172 TRAPPC3LQ5T215 181 aa10.98□□□□□ -0.65
TMEM39A-201ENST00000319172 IBTKQ9P2D0 1353 aaPredicted RBP10.98□□□□□ -0.65
TMEM39A-201ENST00000319172 BECN2A8MW95 431 aa10.98□□□□□ -0.65
TMEM39A-201ENST00000319172 DTNBO60941 627 aa10.98□□□□□ -0.65
TMEM39A-201ENST00000319172 BRF1Q92994 677 aa10.98□□□□□ -0.65
TMEM39A-201ENST00000319172 ERBB4Q15303 1308 aa10.98□□□□□ -0.65
TMEM39A-201ENST00000319172 LRRC24Q50LG9 513 aa10.98□□□□□ -0.65
TMEM39A-201ENST00000319172 NRDCO43847 1150 aa10.97□□□□□ -0.65
TMEM39A-201ENST00000319172 MBD3O95983 291 aa10.97□□□□□ -0.65
TMEM39A-201ENST00000319172 USP5P45974 858 aa10.97□□□□□ -0.65
TMEM39A-201ENST00000319172 UNC5CLQ8IV45 518 aa10.97□□□□□ -0.65
TMEM39A-201ENST00000319172 ZNF622Q969S3 477 aaKnown RBP eCLIP10.97□□□□□ -0.65
TMEM39A-201ENST00000319172 XAGE2Q96GT9 111 aa10.97□□□□□ -0.65
TMEM39A-201ENST00000319172 CRKLP46109 303 aaKnown RBP10.97□□□□□ -0.65
TMEM39A-201ENST00000319172 KRT85P78386 507 aa10.97□□□□□ -0.65
TMEM39A-201ENST00000319172 PARP10Q53GL7 1025 aa10.97□□□□□ -0.65
TMEM39A-201ENST00000319172 PKNOX2Q96KN3 472 aa10.97□□□□□ -0.65
TMEM39A-201ENST00000319172 SH2B1Q9NRF2 756 aaPredicted RBP10.97□□□□□ -0.65
TMEM39A-201ENST00000319172 WWC3Q9ULE0 1092 aa10.97□□□□□ -0.65
TMEM39A-201ENST00000319172 RANBP6O60518 1105 aaKnown RBP10.97□□□□□ -0.65
TMEM39A-201ENST00000319172 IGKV5-2P06315 115 aa10.97□□□□□ -0.65
TMEM39A-201ENST00000319172 RBM25P49756 843 aaKnown RBP10.97□□□□□ -0.65
TMEM39A-201ENST00000319172 CHST3Q7LGC8 479 aa10.97□□□□□ -0.65
TMEM39A-201ENST00000319172 ZGPATQ8N5A5 531 aaKnown RBP10.97□□□□□ -0.65
TMEM39A-201ENST00000319172 SDF4Q9BRK5 362 aa10.97□□□□□ -0.65
TMEM39A-201ENST00000319172 NSFL1CQ9UNZ2 370 aaKnown RBP10.97□□□□□ -0.65
TMEM39A-201ENST00000319172 ANAPC15P60006 121 aa10.96□□□□□ -0.65
TMEM39A-201ENST00000319172 PUS3Q9BZE2 481 aaKnown RBP10.96□□□□□ -0.65
TMEM39A-201ENST00000319172 SGSM2O43147 1006 aa10.96□□□□□ -0.65
TMEM39A-201ENST00000319172 CYP7A1P22680 504 aa10.96□□□□□ -0.65
TMEM39A-201ENST00000319172 STK38Q15208 465 aa10.96□□□□□ -0.65
TMEM39A-201ENST00000319172 CREB3L3Q68CJ9 461 aa10.96□□□□□ -0.65
TMEM39A-201ENST00000319172 ZSCAN29Q8IWY8 852 aaPredicted RBP10.96□□□□□ -0.65
TMEM39A-201ENST00000319172 TRIM22Q8IYM9 498 aa10.96□□□□□ -0.65
TMEM39A-201ENST00000319172 MAP3K15Q6ZN16 1313 aa10.96□□□□□ -0.66
TMEM39A-201ENST00000319172 GOLGA6L19H0YKK7 550 aa10.96□□□□□ -0.66
TMEM39A-201ENST00000319172 ST5P78524 1137 aa10.96□□□□□ -0.66
TMEM39A-201ENST00000319172 KIAA2012Q0VF49 1180 aa10.96□□□□□ -0.66
TMEM39A-201ENST00000319172 CCDC144CPQ8IYA2 1237 aa10.96□□□□□ -0.66
TMEM39A-201ENST00000319172 SNX21Q969T3 373 aa10.96□□□□□ -0.66
TMEM39A-201ENST00000319172 TLR7Q9NYK1 1049 aaKnown RBP10.96□□□□□ -0.66
TMEM39A-201ENST00000319172 CCDC171Q6TFL3 1326 aa10.96□□□□□ -0.66
TMEM39A-201ENST00000319172 RNF113AO15541 343 aaKnown RBP10.95□□□□□ -0.66
TMEM39A-201ENST00000319172 ZFYP08048 801 aaPredicted RBP10.95□□□□□ -0.66
TMEM39A-201ENST00000319172 XBP1P17861 261 aa10.95□□□□□ -0.66
TMEM39A-201ENST00000319172 GJB2P29033 226 aa10.95□□□□□ -0.66
TMEM39A-201ENST00000319172 GIGYF2Q6Y7W6 1299 aaKnown RBP10.95□□□□□ -0.66
TMEM39A-201ENST00000319172 MIGA1Q8NAN2 632 aa10.95□□□□□ -0.66
TMEM39A-201ENST00000319172 NYXQ9GZU5 481 aa10.95□□□□□ -0.66
TMEM39A-201ENST00000319172 HMG20BQ9P0W2 317 aa10.95□□□□□ -0.66
TMEM39A-201ENST00000319172 GOLGA8BA8MQT2 603 aa10.95□□□□□ -0.66
TMEM39A-201ENST00000319172 IKQ13123 557 aaPredicted RBP10.95□□□□□ -0.66
TMEM39A-201ENST00000319172 COL3A1P02461 1466 aaPredicted RBP10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms