RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 GLRX3O76003 335 aaKnown RBP17.94■□□□□ 0.46
SHH-201ENST00000297261 ZNF790Q6PG37 636 aa17.94■□□□□ 0.46
SHH-201ENST00000297261 DDX19AQ9NUU7 478 aaKnown RBP17.94■□□□□ 0.46
SHH-201ENST00000297261 FILIP1LQ4L180 1135 aa17.94■□□□□ 0.46
SHH-201ENST00000297261 TMX1Q9H3N1 280 aa17.94■□□□□ 0.46
SHH-201ENST00000297261 RTL1A6NKG5 1358 aa17.94■□□□□ 0.46
SHH-201ENST00000297261 CCDC57Q2TAC2 916 aa17.94■□□□□ 0.46
SHH-201ENST00000297261 PPFIBP1Q86W92 1011 aa17.94■□□□□ 0.46
SHH-201ENST00000297261 PAXBP1Q9Y5B6 917 aa17.94■□□□□ 0.46
SHH-201ENST00000297261 DHX16O60231 1041 aaKnown RBP17.93■□□□□ 0.46
SHH-201ENST00000297261 FAM193AP78312 1265 aa17.93■□□□□ 0.46
SHH-201ENST00000297261 NECAB1Q8N987 351 aa17.93■□□□□ 0.46
SHH-201ENST00000297261 PPFIA3O75145 1194 aa17.93■□□□□ 0.46
SHH-201ENST00000297261 PTGS1P23219 599 aa17.93■□□□□ 0.46
SHH-201ENST00000297261 RDXP35241 583 aaKnown RBP17.93■□□□□ 0.46
SHH-201ENST00000297261 ZNF445P59923 1031 aa17.93■□□□□ 0.46
SHH-201ENST00000297261 JMYQ8N9B5 988 aa17.93■□□□□ 0.46
SHH-201ENST00000297261 CCDC8Q9H0W5 538 aaPredicted RBP17.93■□□□□ 0.46
SHH-201ENST00000297261 CD163L1Q9NR16 1453 aa17.93■□□□□ 0.46
SHH-201ENST00000297261 KIF24Q5T7B8 1368 aa17.93■□□□□ 0.46
SHH-201ENST00000297261 DNM1Q05193 864 aaKnown RBP17.93■□□□□ 0.46
SHH-201ENST00000297261 DHX8Q14562 1220 aaKnown RBP17.93■□□□□ 0.46
SHH-201ENST00000297261 FAM200AQ8TCP9 573 aa17.93■□□□□ 0.46
SHH-201ENST00000297261 DEF6Q9H4E7 631 aa17.93■□□□□ 0.46
SHH-201ENST00000297261 PDE1AP54750 535 aa17.92■□□□□ 0.46
SHH-201ENST00000297261 BMS1Q14692 1282 aaKnown RBP17.92■□□□□ 0.46
SHH-201ENST00000297261 BIN1O00499 593 aa17.92■□□□□ 0.46
SHH-201ENST00000297261 RHPN1Q8TCX5 695 aa17.92■□□□□ 0.46
SHH-201ENST00000297261 U2AF2P26368 475 aaKnown RBP eCLIP17.92■□□□□ 0.46
SHH-201ENST00000297261 MYOM1P52179 1685 aa17.92■□□□□ 0.46
SHH-201ENST00000297261 SKILP12757 684 aa17.92■□□□□ 0.46
SHH-201ENST00000297261 ANO6Q4KMQ2 910 aa17.92■□□□□ 0.46
SHH-201ENST00000297261 TCEANC2Q96MN5 208 aa17.92■□□□□ 0.46
SHH-201ENST00000297261 ALDH1L1O75891 902 aa17.91■□□□□ 0.46
SHH-201ENST00000297261 SNW1Q13573 536 aaKnown RBP17.91■□□□□ 0.46
SHH-201ENST00000297261 BOLA2Q9H3K6 86 aa17.91■□□□□ 0.46
SHH-201ENST00000297261 BTG4Q9NY30 223 aa17.91■□□□□ 0.46
SHH-201ENST00000297261 GRM8O00222 908 aa17.91■□□□□ 0.46
SHH-201ENST00000297261 CBFA2T2O43439 604 aa17.91■□□□□ 0.46
SHH-201ENST00000297261 HOXB7P09629 217 aa17.91■□□□□ 0.46
SHH-201ENST00000297261 PDIA4P13667 645 aaKnown RBP17.91■□□□□ 0.46
SHH-201ENST00000297261 PLEKHM2Q8IWE5 1019 aa17.91■□□□□ 0.46
SHH-201ENST00000297261 SMARCE1Q969G3 411 aa17.91■□□□□ 0.46
SHH-201ENST00000297261 USP26Q9BXU7 913 aa17.91■□□□□ 0.46
SHH-201ENST00000297261 DACT1Q9NYF0 836 aa17.91■□□□□ 0.46
SHH-201ENST00000297261 CNNM1Q9NRU3 951 aa17.91■□□□□ 0.46
SHH-201ENST00000297261 LINS1Q8NG48 757 aa17.9■□□□□ 0.46
SHH-201ENST00000297261 DDX21Q9NR30 783 aaKnown RBP eCLIP17.9■□□□□ 0.46
SHH-201ENST00000297261 USP31Q70CQ4 1352 aa17.9■□□□□ 0.46
SHH-201ENST00000297261 SLC52A2Q9HAB3 445 aa17.9■□□□□ 0.46
SHH-201ENST00000297261 LMBRD1Q9NUN5 540 aa17.9■□□□□ 0.46
SHH-201ENST00000297261 KAT6BQ8WYB5 2073 aa17.9■□□□□ 0.46
SHH-201ENST00000297261 TERF1P54274 439 aa17.9■□□□□ 0.46
SHH-201ENST00000297261 TMC6Q7Z403 805 aa17.9■□□□□ 0.46
SHH-201ENST00000297261 ESYT1Q9BSJ8 1104 aa17.9■□□□□ 0.46
SHH-201ENST00000297261 ERICH2A1L162 156 aa17.9■□□□□ 0.46
SHH-201ENST00000297261 SMTNL1A8MU46 457 aa17.9■□□□□ 0.46
SHH-201ENST00000297261 NEMFO60524 1076 aa17.9■□□□□ 0.46
SHH-201ENST00000297261 ANTXR1Q9H6X2 564 aa17.9■□□□□ 0.46
SHH-201ENST00000297261 ZSWIM4Q9H7M6 989 aa17.9■□□□□ 0.46
SHH-201ENST00000297261 TMEM63CQ9P1W3 806 aa17.9■□□□□ 0.46
SHH-201ENST00000297261 OVOS2A0A0J9YW53 1432 aa17.89■□□□□ 0.45
SHH-201ENST00000297261 OVOS2Q6IE36 1432 aa17.89■□□□□ 0.45
SHH-201ENST00000297261 MYRIPQ8NFW9 859 aa17.89■□□□□ 0.45
SHH-201ENST00000297261 OTUD7AQ8TE49 926 aaPredicted RBP17.89■□□□□ 0.45
SHH-201ENST00000297261 PCDH11XQ9BZA7 1347 aa17.89■□□□□ 0.45
SHH-201ENST00000297261 PCDH11YQ9BZA8 1340 aa17.89■□□□□ 0.45
SHH-201ENST00000297261 CEP126Q9P2H0 1117 aa17.89■□□□□ 0.45
SHH-201ENST00000297261 KRT32Q14532 448 aa17.88■□□□□ 0.45
SHH-201ENST00000297261 ARHGAP29Q52LW3 1261 aa17.88■□□□□ 0.45
SHH-201ENST00000297261 CCDC47Q96A33 483 aaKnown RBP17.88■□□□□ 0.45
SHH-201ENST00000297261 ZBTB9Q96C00 473 aa17.88■□□□□ 0.45
SHH-201ENST00000297261 DNAJC25Q9H1X3 360 aa17.88■□□□□ 0.45
SHH-201ENST00000297261 ZNF335Q9H4Z2 1342 aaPredicted RBP17.88■□□□□ 0.45
SHH-201ENST00000297261 LMAN1P49257 510 aa17.88■□□□□ 0.45
SHH-201ENST00000297261 FSIP1Q8NA03 581 aa17.88■□□□□ 0.45
SHH-201ENST00000297261 NGLY1Q96IV0 654 aa17.88■□□□□ 0.45
SHH-201ENST00000297261 PA2G4Q9UQ80 394 aaKnown RBP17.88■□□□□ 0.45
SHH-201ENST00000297261 IFT172Q9UG01 1749 aa17.88■□□□□ 0.45
SHH-201ENST00000297261 RIOK3O14730 519 aaKnown RBP17.88■□□□□ 0.45
SHH-201ENST00000297261 PPP1R9BQ96SB3 815 aa17.88■□□□□ 0.45
SHH-201ENST00000297261 GPTP24298 496 aa17.88■□□□□ 0.45
SHH-201ENST00000297261 HSP90AB3PQ58FF7 597 aa17.88■□□□□ 0.45
SHH-201ENST00000297261 CEP89Q96ST8 783 aa17.88■□□□□ 0.45
SHH-201ENST00000297261 ERBB3P21860 1342 aa17.88■□□□□ 0.45
SHH-201ENST00000297261 CEP170BQ9Y4F5 1589 aaPredicted RBP17.88■□□□□ 0.45
SHH-201ENST00000297261 DIP2AQ14689 1571 aa17.87■□□□□ 0.45
SHH-201ENST00000297261 RIMS1Q86UR5 1692 aaKnown RBP17.87■□□□□ 0.45
SHH-201ENST00000297261 ZNF496Q96IT1 587 aaPredicted RBP17.87■□□□□ 0.45
SHH-201ENST00000297261 CHAMP1Q96JM3 812 aa17.87■□□□□ 0.45
SHH-201ENST00000297261 IQSEC2Q5JU85 1478 aa17.87■□□□□ 0.45
SHH-201ENST00000297261 ISM2Q6H9L7 571 aa17.87■□□□□ 0.45
SHH-201ENST00000297261 DTNBO60941 627 aa17.87■□□□□ 0.45
SHH-201ENST00000297261 DHX37Q8IY37 1157 aaKnown RBP17.86■□□□□ 0.45
SHH-201ENST00000297261 CWC25Q9NXE8 425 aaPredicted RBP17.86■□□□□ 0.45
SHH-201ENST00000297261 LMTK3Q96Q04 1460 aa17.86■□□□□ 0.45
SHH-201ENST00000297261 F13A1P00488 732 aa17.86■□□□□ 0.45
SHH-201ENST00000297261 TOP1P11387 765 aaKnown RBP17.86■□□□□ 0.45
SHH-201ENST00000297261 PHKG2P15735 406 aa17.86■□□□□ 0.45
SHH-201ENST00000297261 CCDC158Q5M9N0 1113 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms