RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 ZSCAN31Q96LW9 406 aaPredicted RBP16.88■□□□□ 0.29
SDC1-201ENST00000254351 NPHP3Q7Z494 1330 aa16.88■□□□□ 0.29
SDC1-201ENST00000254351 CCAR1Q8IX12 1150 aaKnown RBP16.87■□□□□ 0.29
SDC1-201ENST00000254351 CCAR2Q8N163 923 aaKnown RBP16.87■□□□□ 0.29
SDC1-201ENST00000254351 SSH3Q8TE77 659 aa16.87■□□□□ 0.29
SDC1-201ENST00000254351 RUFY2Q8WXA3 655 aa16.87■□□□□ 0.29
SDC1-201ENST00000254351 KLHDC4Q8TBB5 520 aa16.87■□□□□ 0.29
SDC1-201ENST00000254351 TBX22Q9Y458 520 aa16.87■□□□□ 0.29
SDC1-201ENST00000254351 CPSF1Q10570 1443 aaKnown RBP16.87■□□□□ 0.29
SDC1-201ENST00000254351 AMPHP49418 695 aa16.87■□□□□ 0.29
SDC1-201ENST00000254351 CLCN6P51797 869 aa16.87■□□□□ 0.29
SDC1-201ENST00000254351 HSP90AA4PQ58FG1 418 aa16.87■□□□□ 0.29
SDC1-201ENST00000254351 FSD1Q9BTV5 496 aa16.87■□□□□ 0.29
SDC1-201ENST00000254351 A0A0D9SFI3 127 aa16.86■□□□□ 0.29
SDC1-201ENST00000254351 TMC6Q7Z403 805 aa16.86■□□□□ 0.29
SDC1-201ENST00000254351 ERO1AQ96HE7 468 aa16.86■□□□□ 0.29
SDC1-201ENST00000254351 SLC26A8Q96RN1 970 aa16.86■□□□□ 0.29
SDC1-201ENST00000254351 SLC27A2O14975 620 aa16.86■□□□□ 0.29
SDC1-201ENST00000254351 CCZ1BP86790 482 aa16.86■□□□□ 0.29
SDC1-201ENST00000254351 CCZ1P86791 482 aaPredicted RBP16.86■□□□□ 0.29
SDC1-201ENST00000254351 GNL2Q13823 731 aaKnown RBP16.86■□□□□ 0.29
SDC1-201ENST00000254351 DNAI1Q9UI46 699 aa16.86■□□□□ 0.29
SDC1-201ENST00000254351 CCDC171Q6TFL3 1326 aa16.86■□□□□ 0.29
SDC1-201ENST00000254351 GLRX3O76003 335 aaKnown RBP16.85■□□□□ 0.29
SDC1-201ENST00000254351 CPS1P31327 1500 aa16.85■□□□□ 0.29
SDC1-201ENST00000254351 ME1P48163 572 aa16.85■□□□□ 0.29
SDC1-201ENST00000254351 CCT2P78371 535 aaKnown RBP16.85■□□□□ 0.29
SDC1-201ENST00000254351 SEC62Q99442 399 aaKnown RBP16.85■□□□□ 0.29
SDC1-201ENST00000254351 TLR7Q9NYK1 1049 aaKnown RBP16.85■□□□□ 0.29
SDC1-201ENST00000254351 TNNT3P45378 269 aaPredicted RBP16.85■□□□□ 0.29
SDC1-201ENST00000254351 GOLPH3LQ9H4A5 285 aa16.85■□□□□ 0.29
SDC1-201ENST00000254351 ERBB3P21860 1342 aa16.85■□□□□ 0.29
SDC1-201ENST00000254351 PDCP20941 246 aa16.85■□□□□ 0.29
SDC1-201ENST00000254351 ST5P78524 1137 aa16.85■□□□□ 0.29
SDC1-201ENST00000254351 IQCB1Q15051 598 aa16.85■□□□□ 0.29
SDC1-201ENST00000254351 NECTIN1Q15223 517 aa16.85■□□□□ 0.29
SDC1-201ENST00000254351 NYAP1Q6ZVC0 841 aa16.85■□□□□ 0.29
SDC1-201ENST00000254351 SIRT1Q96EB6 747 aa16.85■□□□□ 0.29
SDC1-201ENST00000254351 SDF4Q9BRK5 362 aa16.85■□□□□ 0.29
SDC1-201ENST00000254351 CRB1P82279 1406 aa16.84■□□□□ 0.29
SDC1-201ENST00000254351 CALCOCO1Q9P1Z2 691 aa16.84■□□□□ 0.29
SDC1-201ENST00000254351 CCDC129Q6ZRS4 1044 aa16.84■□□□□ 0.29
SDC1-201ENST00000254351 ZNF589Q86UQ0 364 aaPredicted RBP16.84■□□□□ 0.29
SDC1-201ENST00000254351 CHPF2Q9P2E5 772 aa16.84■□□□□ 0.29
SDC1-201ENST00000254351 TTC21AQ8NDW8 1320 aa16.83■□□□□ 0.29
SDC1-201ENST00000254351 URI1O94763 535 aaPredicted RBP16.83■□□□□ 0.29
SDC1-201ENST00000254351 SYCP1Q15431 976 aa16.83■□□□□ 0.29
SDC1-201ENST00000254351 SKIDA1Q1XH10 827 aa16.83■□□□□ 0.29
SDC1-201ENST00000254351 CHST3Q7LGC8 479 aa16.83■□□□□ 0.29
SDC1-201ENST00000254351 ZSWIM4Q9H7M6 989 aa16.83■□□□□ 0.29
SDC1-201ENST00000254351 ECHDC1Q9NTX5 307 aa16.83■□□□□ 0.29
SDC1-201ENST00000254351 C9orf78Q9NZ63 289 aaPredicted RBP16.83■□□□□ 0.29
SDC1-201ENST00000254351 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.83■□□□□ 0.28
SDC1-201ENST00000254351 C14orf37Q86TY3 774 aa16.83■□□□□ 0.28
SDC1-201ENST00000254351 EYA1Q99502 592 aa16.83■□□□□ 0.28
SDC1-201ENST00000254351 IFNKQ9P0W0 207 aa16.83■□□□□ 0.28
SDC1-201ENST00000254351 ATP7BP35670 1465 aa16.83■□□□□ 0.28
SDC1-201ENST00000254351 CDK12Q9NYV4 1490 aaPredicted RBP16.83■□□□□ 0.28
SDC1-201ENST00000254351 KINO60870 393 aaKnown RBP16.83■□□□□ 0.28
SDC1-201ENST00000254351 TOB2Q14106 344 aaPredicted RBP16.83■□□□□ 0.28
SDC1-201ENST00000254351 BMS1Q14692 1282 aaKnown RBP16.83■□□□□ 0.28
SDC1-201ENST00000254351 ZRSR1Q15695 479 aaKnown RBP16.83■□□□□ 0.28
SDC1-201ENST00000254351 CWF19L2Q2TBE0 894 aaKnown RBP16.83■□□□□ 0.28
SDC1-201ENST00000254351 A0A1B0GVL5 298 aa16.82■□□□□ 0.28
SDC1-201ENST00000254351 E4F1Q66K89 784 aaPredicted RBP16.82■□□□□ 0.28
SDC1-201ENST00000254351 FHOD1Q9Y613 1164 aa16.82■□□□□ 0.28
SDC1-201ENST00000254351 PTPRUQ92729 1446 aa16.82■□□□□ 0.28
SDC1-201ENST00000254351 PNMA6AP0CW24 399 aaPredicted RBP16.82■□□□□ 0.28
SDC1-201ENST00000254351 CCDC73Q6ZRK6 1079 aa16.82■□□□□ 0.28
SDC1-201ENST00000254351 C10orf67Q8IYJ2 551 aa16.82■□□□□ 0.28
SDC1-201ENST00000254351 NCOA5Q9HCD5 579 aaKnown RBP16.82■□□□□ 0.28
SDC1-201ENST00000254351 EDC4Q6P2E9 1401 aaKnown RBP16.81■□□□□ 0.28
SDC1-201ENST00000254351 KCNQ3O43525 872 aa16.81■□□□□ 0.28
SDC1-201ENST00000254351 AIMP1Q12904 312 aaKnown RBP16.81■□□□□ 0.28
SDC1-201ENST00000254351 SLFNL1Q499Z3 407 aa16.81■□□□□ 0.28
SDC1-201ENST00000254351 OTUD7BQ6GQQ9 843 aa16.81■□□□□ 0.28
SDC1-201ENST00000254351 RAB11FIP4Q86YS3 637 aa16.81■□□□□ 0.28
SDC1-201ENST00000254351 UBXN4Q92575 508 aa16.81■□□□□ 0.28
SDC1-201ENST00000254351 STX1AQ16623 288 aa16.81■□□□□ 0.28
SDC1-201ENST00000254351 KRBA2Q6ZNG9 492 aa16.81■□□□□ 0.28
SDC1-201ENST00000254351 DHX40Q8IX18 779 aaKnown RBP16.81■□□□□ 0.28
SDC1-201ENST00000254351 FSIP1Q8NA03 581 aa16.81■□□□□ 0.28
SDC1-201ENST00000254351 MNS1Q8NEH6 495 aa16.81■□□□□ 0.28
SDC1-201ENST00000254351 PPP1R13BQ96KQ4 1090 aa16.81■□□□□ 0.28
SDC1-201ENST00000254351 XPO4Q9C0E2 1151 aaKnown RBP16.81■□□□□ 0.28
SDC1-201ENST00000254351 LMOD1P29536 600 aaPredicted RBP16.81■□□□□ 0.28
SDC1-201ENST00000254351 PLA2G4AP47712 749 aa16.81■□□□□ 0.28
SDC1-201ENST00000254351 RAD51AP2Q09MP3 1159 aa16.81■□□□□ 0.28
SDC1-201ENST00000254351 IL17REQ8NFR9 667 aa16.81■□□□□ 0.28
SDC1-201ENST00000254351 IPO4Q8TEX9 1081 aaKnown RBP16.81■□□□□ 0.28
SDC1-201ENST00000254351 ACEP12821 1306 aa16.8■□□□□ 0.28
SDC1-201ENST00000254351 PRR36Q9H6K5 1346 aa16.8■□□□□ 0.28
SDC1-201ENST00000254351 TRIM66O15016 1216 aa16.8■□□□□ 0.28
SDC1-201ENST00000254351 Q6ZUG5 572 aa16.8■□□□□ 0.28
SDC1-201ENST00000254351 ELP1O95163 1332 aa16.8■□□□□ 0.28
SDC1-201ENST00000254351 CDC42BPGQ6DT37 1551 aa16.8■□□□□ 0.28
SDC1-201ENST00000254351 ROBO2Q9HCK4 1378 aa16.8■□□□□ 0.28
SDC1-201ENST00000254351 HTATSF1O43719 755 aaKnown RBP16.8■□□□□ 0.28
SDC1-201ENST00000254351 PSMA5P28066 241 aa16.8■□□□□ 0.28
SDC1-201ENST00000254351 TMCO3Q6UWJ1 677 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms