RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 KRT85P78386 507 aa16.06■□□□□ 0.16
LDLR-201ENST00000252444 GRIPAP1Q4V328 841 aa16.06■□□□□ 0.16
LDLR-201ENST00000252444 CTCFLQ8NI51 663 aaPredicted RBP16.06■□□□□ 0.16
LDLR-201ENST00000252444 SEC63Q9UGP8 760 aaKnown RBP16.06■□□□□ 0.16
LDLR-201ENST00000252444 ATP10DQ9P241 1426 aa16.06■□□□□ 0.16
LDLR-201ENST00000252444 FAM13BQ9NYF5 915 aa16.06■□□□□ 0.16
LDLR-201ENST00000252444 ABCF2Q9UG63 623 aa16.06■□□□□ 0.16
LDLR-201ENST00000252444 EYA2O00167 538 aa16.05■□□□□ 0.16
LDLR-201ENST00000252444 CALM1P0DP23 149 aa16.05■□□□□ 0.16
LDLR-201ENST00000252444 CALM2P0DP24 149 aa16.05■□□□□ 0.16
LDLR-201ENST00000252444 CALM3P0DP25 149 aa16.05■□□□□ 0.16
LDLR-201ENST00000252444 TPRNQ4KMQ1 711 aa16.05■□□□□ 0.16
LDLR-201ENST00000252444 RRP12Q5JTH9 1297 aaKnown RBP16.05■□□□□ 0.16
LDLR-201ENST00000252444 FBLN1P23142 703 aa16.05■□□□□ 0.16
LDLR-201ENST00000252444 BOLA2Q9H3K6 86 aa16.05■□□□□ 0.16
LDLR-201ENST00000252444 MKNK2Q9HBH9 465 aa16.05■□□□□ 0.16
LDLR-201ENST00000252444 TCIRG1Q13488 830 aa16.05■□□□□ 0.16
LDLR-201ENST00000252444 PUM3Q15397 648 aaKnown RBP16.05■□□□□ 0.16
LDLR-201ENST00000252444 MPHOSPH6Q99547 160 aaKnown RBP16.05■□□□□ 0.16
LDLR-201ENST00000252444 NCOA7Q8NI08 942 aa16.05■□□□□ 0.16
LDLR-201ENST00000252444 FAM98CQ17RN3 349 aaKnown RBP16.04■□□□□ 0.16
LDLR-201ENST00000252444 ARHGEF28Q8N1W1 1705 aaKnown RBP16.04■□□□□ 0.16
LDLR-201ENST00000252444 PDE1AP54750 535 aa16.04■□□□□ 0.16
LDLR-201ENST00000252444 TNIP1Q15025 636 aa16.04■□□□□ 0.16
LDLR-201ENST00000252444 CABP5Q9NP86 173 aa16.04■□□□□ 0.16
LDLR-201ENST00000252444 ATG3Q9NT62 314 aa16.04■□□□□ 0.16
LDLR-201ENST00000252444 CDK5RAP3Q96JB5 506 aa16.04■□□□□ 0.16
LDLR-201ENST00000252444 ZBTB7BO15156 539 aaPredicted RBP16.04■□□□□ 0.16
LDLR-201ENST00000252444 ZNF853P0CG23 659 aa16.04■□□□□ 0.16
LDLR-201ENST00000252444 ZSCAN29Q8IWY8 852 aaPredicted RBP16.04■□□□□ 0.16
LDLR-201ENST00000252444 CCAR1Q8IX12 1150 aaKnown RBP16.04■□□□□ 0.16
LDLR-201ENST00000252444 PCCAP05165 728 aaPredicted RBP16.04■□□□□ 0.16
LDLR-201ENST00000252444 MCMDC2Q4G0Z9 681 aa16.04■□□□□ 0.16
LDLR-201ENST00000252444 CATIPQ7Z7H3 387 aa16.04■□□□□ 0.16
LDLR-201ENST00000252444 FOXD4L1Q9NU39 408 aa16.04■□□□□ 0.16
LDLR-201ENST00000252444 RTL9Q8NET4 1388 aa16.03■□□□□ 0.16
LDLR-201ENST00000252444 GPR108Q9NPR9 543 aa16.03■□□□□ 0.16
LDLR-201ENST00000252444 BMP15O95972 392 aa16.03■□□□□ 0.16
LDLR-201ENST00000252444 ADRA2BP18089 450 aa16.03■□□□□ 0.16
LDLR-201ENST00000252444 CPDO75976 1380 aa16.03■□□□□ 0.16
LDLR-201ENST00000252444 STK38Q15208 465 aa16.03■□□□□ 0.16
LDLR-201ENST00000252444 TBC1D22AQ8WUA7 517 aa16.03■□□□□ 0.16
LDLR-201ENST00000252444 KINO60870 393 aaKnown RBP16.03■□□□□ 0.16
LDLR-201ENST00000252444 RXRBP28702 533 aa16.03■□□□□ 0.16
LDLR-201ENST00000252444 PRIM1P49642 420 aaKnown RBP16.03■□□□□ 0.16
LDLR-201ENST00000252444 LIMCH1Q9UPQ0 1083 aa16.03■□□□□ 0.16
LDLR-201ENST00000252444 KNDC1Q76NI1 1749 aa16.03■□□□□ 0.16
LDLR-201ENST00000252444 KIF20BQ96Q89 1820 aa16.02■□□□□ 0.16
LDLR-201ENST00000252444 CERKQ8TCT0 537 aa16.02■□□□□ 0.16
LDLR-201ENST00000252444 RGS12O14924 1447 aa16.02■□□□□ 0.16
LDLR-201ENST00000252444 GCKRQ14397 625 aa16.02■□□□□ 0.16
LDLR-201ENST00000252444 C20orf194Q5TEA3 1177 aa16.02■□□□□ 0.16
LDLR-201ENST00000252444 CCDC8Q9H0W5 538 aaPredicted RBP16.02■□□□□ 0.16
LDLR-201ENST00000252444 MAP3K15Q6ZN16 1313 aa16.02■□□□□ 0.16
LDLR-201ENST00000252444 HEG1Q9ULI3 1381 aa16.02■□□□□ 0.15
LDLR-201ENST00000252444 ZNF622Q969S3 477 aaKnown RBP eCLIP16.02■□□□□ 0.153e-9■□□□□ 10.9
LDLR-201ENST00000252444 ADGRB2O60241 1585 aa16.02■□□□□ 0.15
LDLR-201ENST00000252444 NLGN1Q8N2Q7 840 aa16.02■□□□□ 0.15
LDLR-201ENST00000252444 RNF113AO15541 343 aaKnown RBP16.01■□□□□ 0.15
LDLR-201ENST00000252444 RAB34Q9BZG1 259 aa16.01■□□□□ 0.15
LDLR-201ENST00000252444 ZNF521Q96K83 1311 aa16.01■□□□□ 0.15
LDLR-201ENST00000252444 UBR1Q8IWV7 1749 aa16.01■□□□□ 0.15
LDLR-201ENST00000252444 TNNI2P48788 182 aa16.01■□□□□ 0.15
LDLR-201ENST00000252444 WDR66Q8TBY9 1149 aa16.01■□□□□ 0.15
LDLR-201ENST00000252444 SSH2Q76I76 1423 aa16.01■□□□□ 0.15
LDLR-201ENST00000252444 STIM1Q13586 685 aa16.01■□□□□ 0.15
LDLR-201ENST00000252444 TSPYL6Q8N831 410 aa16.01■□□□□ 0.15
LDLR-201ENST00000252444 IL17REQ8NFR9 667 aa16.01■□□□□ 0.15
LDLR-201ENST00000252444 LRRC7Q96NW7 1537 aa16■□□□□ 0.15
LDLR-201ENST00000252444 SEMA3EO15041 775 aa16■□□□□ 0.15
LDLR-201ENST00000252444 CIAO1O76071 339 aa16■□□□□ 0.15
LDLR-201ENST00000252444 CASTP20810 708 aaKnown RBP16■□□□□ 0.15
LDLR-201ENST00000252444 PAG1Q9NWQ8 432 aa16■□□□□ 0.15
LDLR-201ENST00000252444 GLIPR1L2Q4G1C9 344 aa16■□□□□ 0.15
LDLR-201ENST00000252444 GTPBP4Q9BZE4 634 aaKnown RBP16■□□□□ 0.15
LDLR-201ENST00000252444 IPO7O95373 1038 aaKnown RBP16■□□□□ 0.15
LDLR-201ENST00000252444 TXLNBQ8N3L3 684 aa16■□□□□ 0.15
LDLR-201ENST00000252444 CUL5Q93034 780 aa16■□□□□ 0.15
LDLR-201ENST00000252444 ZC3H12CQ9C0D7 883 aaKnown RBP16■□□□□ 0.15
LDLR-201ENST00000252444 LGR6Q9HBX8 967 aa16■□□□□ 0.15
LDLR-201ENST00000252444 HSP90AA2PQ14568 343 aaPredicted RBP16■□□□□ 0.15
LDLR-201ENST00000252444 MFSD6Q6ZSS7 791 aa16■□□□□ 0.15
LDLR-201ENST00000252444 OGFOD1Q8N543 542 aa16■□□□□ 0.15
LDLR-201ENST00000252444 ZNF496Q96IT1 587 aaPredicted RBP16■□□□□ 0.15
LDLR-201ENST00000252444 QTRT2Q9H974 415 aaKnown RBP16■□□□□ 0.15
LDLR-201ENST00000252444 SLC12A7Q9Y666 1083 aa16■□□□□ 0.15
LDLR-201ENST00000252444 LARP1BQ659C4 914 aaKnown RBP15.99■□□□□ 0.15
LDLR-201ENST00000252444 ESR2Q92731 530 aa15.99■□□□□ 0.15
LDLR-201ENST00000252444 GOLIM4O00461 696 aa15.99■□□□□ 0.15
LDLR-201ENST00000252444 MCM5P33992 734 aa15.99■□□□□ 0.15
LDLR-201ENST00000252444 LPIN2Q92539 896 aa15.99■□□□□ 0.15
LDLR-201ENST00000252444 SLC27A3Q5K4L6 730 aa15.99■□□□□ 0.15
LDLR-201ENST00000252444 NAA16Q6N069 864 aaPredicted RBP15.99■□□□□ 0.15
LDLR-201ENST00000252444 CEP89Q96ST8 783 aa15.99■□□□□ 0.15
LDLR-201ENST00000252444 ZBTB38Q8NAP3 1195 aaPredicted RBP15.99■□□□□ 0.15
LDLR-201ENST00000252444 NAP1L4Q99733 375 aaKnown RBP15.99■□□□□ 0.15
LDLR-201ENST00000252444 SH2D4AQ9H788 454 aa15.99■□□□□ 0.15
LDLR-201ENST00000252444 CC2D2BQ6DHV5 1058 aa15.98■□□□□ 0.15
LDLR-201ENST00000252444 SCAND2PQ9GZW5 306 aaPredicted RBP15.98■□□□□ 0.15
LDLR-201ENST00000252444 C3P01024 1663 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms