RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 NUTM1Q86Y26 1132 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 CNGA4Q8IV77 575 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 TCHPQ9BT92 498 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 PRPF31Q8WWY3 499 aaKnown RBP6.91□□□□□ -1.3
VPS13D-201ENST00000011700 NAPBQ9H115 298 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 PCF11O94913 1555 aaKnown RBP6.91□□□□□ -1.3
VPS13D-201ENST00000011700 PEG3Q9GZU2 1588 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 TDRD9Q8NDG6 1382 aaKnown RBP6.91□□□□□ -1.3
VPS13D-201ENST00000011700 LDHCP07864 332 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 TSNAXIP1Q2TAA8 658 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 CCDC102BQ68D86 513 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 TCP11L2Q8N4U5 519 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 ABTB2Q8N961 1025 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 ARHGAP45Q92619 1136 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 HAUS8Q9BT25 410 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 KRT23Q9C075 422 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 SLC12A7Q9Y666 1083 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 ACTN4O43707 911 aaKnown RBP6.91□□□□□ -1.3
VPS13D-201ENST00000011700 IFIT1P09914 478 aaKnown RBP6.91□□□□□ -1.3
VPS13D-201ENST00000011700 MATR3P43243 847 aaKnown RBP eCLIP6.91□□□□□ -1.38e-7■■■■□ 21.9
VPS13D-201ENST00000011700 PAIP2Q9BPZ3 127 aaKnown RBP6.91□□□□□ -1.3
VPS13D-201ENST00000011700 TXNDC16Q9P2K2 825 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 LACTBP83111 547 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-201ENST00000011700 FOXD4L6Q3SYB3 417 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-201ENST00000011700 FOXD4L3Q6VB84 417 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-201ENST00000011700 SAMD15Q9P1V8 674 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 CNNM3Q8NE01 707 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 PLCB1Q9NQ66 1216 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 CALM1P0DP23 149 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 CALM2P0DP24 149 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 CALM3P0DP25 149 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-201ENST00000011700 INSRP06213 1382 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 MTUS1Q9ULD2 1270 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 PBRM1Q86U86 1689 aa6.9□□□□□ -1.3
VPS13D-201ENST00000011700 HSPA8P11142 646 aaKnown RBP6.9□□□□□ -1.3
VPS13D-201ENST00000011700 PLCG2P16885 1265 aa6.9□□□□□ -1.3
VPS13D-201ENST00000011700 HLTFQ14527 1009 aaKnown RBP eCLIP6.9□□□□□ -1.3
VPS13D-201ENST00000011700 LTV1Q96GA3 475 aaPredicted RBP6.9□□□□□ -1.3
VPS13D-201ENST00000011700 EIF4G3O43432 1585 aaKnown RBP6.9□□□□□ -1.3
VPS13D-201ENST00000011700 MYH3P11055 1940 aa6.9□□□□□ -1.3
VPS13D-201ENST00000011700 RTEL1-TNFRSF6BF6WH68 1400 aa6.9□□□□□ -1.3
VPS13D-201ENST00000011700 ABCD1P33897 745 aa6.9□□□□□ -1.3
VPS13D-201ENST00000011700 TMEM87AQ8NBN3 555 aa6.9□□□□□ -1.3
VPS13D-201ENST00000011700 PPIP5K1Q6PFW1 1433 aa6.9□□□□□ -1.3
VPS13D-201ENST00000011700 GNAT3A8MTJ3 354 aa6.9□□□□□ -1.3
VPS13D-201ENST00000011700 PSMA7O14818 248 aa6.9□□□□□ -1.3
VPS13D-201ENST00000011700 NT5C2P49902 561 aa6.9□□□□□ -1.3
VPS13D-201ENST00000011700 INTS4Q96HW7 963 aaKnown RBP6.9□□□□□ -1.3
VPS13D-201ENST00000011700 MX1P20591 662 aa6.9□□□□□ -1.3
VPS13D-201ENST00000011700 RNF168Q8IYW5 571 aaPredicted RBP6.9□□□□□ -1.3
VPS13D-201ENST00000011700 ATP2A3Q93084 1043 aa6.9□□□□□ -1.3
VPS13D-201ENST00000011700 LRP2BPQ9P2M1 347 aa6.9□□□□□ -1.3
VPS13D-201ENST00000011700 PNMA2Q9UL42 364 aa6.9□□□□□ -1.3
VPS13D-201ENST00000011700 SRGAP3O43295 1099 aa6.9□□□□□ -1.31
VPS13D-201ENST00000011700 LUC7L3O95232 432 aaKnown RBP6.9□□□□□ -1.31
VPS13D-201ENST00000011700 RRP7AQ9Y3A4 280 aaKnown RBP6.9□□□□□ -1.31
VPS13D-201ENST00000011700 NCOA1Q15788 1441 aa6.9□□□□□ -1.31
VPS13D-201ENST00000011700 MTHFSP49914 203 aa6.9□□□□□ -1.31
VPS13D-201ENST00000011700 CFAP58Q5T655 872 aa6.9□□□□□ -1.31
VPS13D-201ENST00000011700 SMC1BQ8NDV3 1235 aa6.9□□□□□ -1.31
VPS13D-201ENST00000011700 STMN2Q93045 179 aa6.9□□□□□ -1.31
VPS13D-201ENST00000011700 JADE2Q9NQC1 790 aa6.9□□□□□ -1.31
VPS13D-201ENST00000011700 MYH15Q9Y2K3 1946 aa6.9□□□□□ -1.31
VPS13D-201ENST00000011700 TNPO1Q92973 898 aaKnown RBP6.9□□□□□ -1.31
VPS13D-201ENST00000011700 ZFYVE9O95405 1425 aa6.9□□□□□ -1.31
VPS13D-201ENST00000011700 RPL13P26373 211 aaKnown RBP6.89□□□□□ -1.31
VPS13D-201ENST00000011700 CCDC121Q6ZUS5 278 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 CCDC26Q8TAB7 109 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 PFDN4Q9NQP4 134 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 SSRP1Q08945 709 aaKnown RBP6.89□□□□□ -1.31
VPS13D-201ENST00000011700 HVCN1Q96D96 273 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.89□□□□□ -1.31
VPS13D-201ENST00000011700 ELP1O95163 1332 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 HDXQ7Z353 690 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 TBC1D31Q96DN5 1066 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 ABCA5Q8WWZ7 1642 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 TNNC1P63316 161 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 CCDC129Q6ZRS4 1044 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 ARMC9Q7Z3E5 817 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 SYTL4Q96C24 671 aaPredicted RBP6.89□□□□□ -1.31
VPS13D-201ENST00000011700 UBA7P41226 1012 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 BRAPQ7Z569 592 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 LMNTD2Q8IXW0 634 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 KIFAP3Q92845 792 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 PARP2Q9UGN5 583 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 MINK1Q8N4C8 1332 aaPredicted RBP6.89□□□□□ -1.31
VPS13D-201ENST00000011700 HLA-DOAP06340 250 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 KIF11P52732 1056 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 MCTP2Q6DN12 878 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 RUFY4Q6ZNE9 571 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 FAM200AQ8TCP9 573 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 MSH5O43196 834 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 LGSNQ5TDP6 509 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 EXOC1Q9NV70 894 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 COMMD10Q9Y6G5 202 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 SCAF11Q99590 1463 aaKnown RBP6.89□□□□□ -1.31
VPS13D-201ENST00000011700 TNNT1P13805 278 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 SLC5A1P13866 664 aa6.89□□□□□ -1.31
VPS13D-201ENST00000011700 FYB2Q5VWT5 728 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms